data_5MF5 # _model_server_result.job_id 3zr-BYrfcVgz6svTfjghzw _model_server_result.datetime_utc '2024-11-28 12:54:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5MF5 # _exptl.entry_id 5MF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MF5 _cell.length_a 64.59 _cell.length_b 64.59 _cell.length_c 135.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 35 A GLU 39 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 A O VAL 36 A VAL 40 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A OD1 ASN 94 A ASN 98 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 A OE1 GLU 126 A GLU 130 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A OD2 ASP 156 A ASP 160 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 A OD1 ASP 157 A ASP 161 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc7 A OD1 ASP 179 A ASP 183 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 B O6 C2E . A C2E 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc9 B O21 C2E . A C2E 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc10 B O11 C2E . A C2E 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 D MG MG . A MG 303 1_555 F O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc12 E MG MG . A MG 304 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc13 E MG MG . A MG 304 1_555 F O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MF5 _atom_sites.fract_transf_matrix[1][1] 0.015482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C2E A 1 301 302 C2E C2E . C 3 MG A 1 302 303 MG MG . D 3 MG A 1 303 304 MG MG . E 3 MG A 1 304 305 MG MG . F 4 HOH A 1 401 562 HOH HOH . F 4 HOH A 2 402 578 HOH HOH . F 4 HOH A 3 403 522 HOH HOH . F 4 HOH A 4 404 551 HOH HOH . F 4 HOH A 5 405 403 HOH HOH . F 4 HOH A 6 406 402 HOH HOH . F 4 HOH A 7 407 483 HOH HOH . F 4 HOH A 8 408 571 HOH HOH . F 4 HOH A 9 409 401 HOH HOH . F 4 HOH A 10 410 536 HOH HOH . F 4 HOH A 11 411 524 HOH HOH . F 4 HOH A 12 412 542 HOH HOH . F 4 HOH A 13 413 406 HOH HOH . F 4 HOH A 14 414 496 HOH HOH . F 4 HOH A 15 415 407 HOH HOH . F 4 HOH A 16 416 404 HOH HOH . F 4 HOH A 17 417 510 HOH HOH . F 4 HOH A 18 418 525 HOH HOH . F 4 HOH A 19 419 503 HOH HOH . F 4 HOH A 20 420 411 HOH HOH . F 4 HOH A 21 421 498 HOH HOH . F 4 HOH A 22 422 409 HOH HOH . F 4 HOH A 23 423 412 HOH HOH . F 4 HOH A 24 424 410 HOH HOH . F 4 HOH A 25 425 546 HOH HOH . F 4 HOH A 26 426 415 HOH HOH . F 4 HOH A 27 427 552 HOH HOH . F 4 HOH A 28 428 408 HOH HOH . F 4 HOH A 29 429 463 HOH HOH . F 4 HOH A 30 430 405 HOH HOH . F 4 HOH A 31 431 537 HOH HOH . F 4 HOH A 32 432 511 HOH HOH . F 4 HOH A 33 433 413 HOH HOH . F 4 HOH A 34 434 414 HOH HOH . F 4 HOH A 35 435 492 HOH HOH . F 4 HOH A 36 436 469 HOH HOH . F 4 HOH A 37 437 500 HOH HOH . F 4 HOH A 38 438 509 HOH HOH . F 4 HOH A 39 439 574 HOH HOH . F 4 HOH A 40 440 531 HOH HOH . F 4 HOH A 41 441 579 HOH HOH . F 4 HOH A 42 442 577 HOH HOH . F 4 HOH A 43 443 464 HOH HOH . F 4 HOH A 44 444 417 HOH HOH . F 4 HOH A 45 445 481 HOH HOH . F 4 HOH A 46 446 512 HOH HOH . F 4 HOH A 47 447 425 HOH HOH . F 4 HOH A 48 448 504 HOH HOH . F 4 HOH A 49 449 422 HOH HOH . F 4 HOH A 50 450 547 HOH HOH . F 4 HOH A 51 451 418 HOH HOH . F 4 HOH A 52 452 486 HOH HOH . F 4 HOH A 53 453 508 HOH HOH . F 4 HOH A 54 454 559 HOH HOH . F 4 HOH A 55 455 419 HOH HOH . F 4 HOH A 56 456 472 HOH HOH . F 4 HOH A 57 457 493 HOH HOH . F 4 HOH A 58 458 529 HOH HOH . F 4 HOH A 59 459 560 HOH HOH . F 4 HOH A 60 460 424 HOH HOH . F 4 HOH A 61 461 476 HOH HOH . F 4 HOH A 62 462 421 HOH HOH . F 4 HOH A 63 463 480 HOH HOH . F 4 HOH A 64 464 475 HOH HOH . F 4 HOH A 65 465 506 HOH HOH . F 4 HOH A 66 466 474 HOH HOH . F 4 HOH A 67 467 416 HOH HOH . F 4 HOH A 68 468 497 HOH HOH . F 4 HOH A 69 469 479 HOH HOH . F 4 HOH A 70 470 573 HOH HOH . F 4 HOH A 71 471 427 HOH HOH . F 4 HOH A 72 472 482 HOH HOH . F 4 HOH A 73 473 423 HOH HOH . F 4 HOH A 74 474 426 HOH HOH . F 4 HOH A 75 475 505 HOH HOH . F 4 HOH A 76 476 420 HOH HOH . F 4 HOH A 77 477 502 HOH HOH . F 4 HOH A 78 478 473 HOH HOH . F 4 HOH A 79 479 528 HOH HOH . F 4 HOH A 80 480 543 HOH HOH . F 4 HOH A 81 481 428 HOH HOH . F 4 HOH A 82 482 489 HOH HOH . F 4 HOH A 83 483 568 HOH HOH . F 4 HOH A 84 484 517 HOH HOH . F 4 HOH A 85 485 495 HOH HOH . F 4 HOH A 86 486 431 HOH HOH . F 4 HOH A 87 487 433 HOH HOH . F 4 HOH A 88 488 538 HOH HOH . F 4 HOH A 89 489 432 HOH HOH . F 4 HOH A 90 490 437 HOH HOH . F 4 HOH A 91 491 429 HOH HOH . F 4 HOH A 92 492 556 HOH HOH . F 4 HOH A 93 493 430 HOH HOH . F 4 HOH A 94 494 490 HOH HOH . F 4 HOH A 95 495 439 HOH HOH . F 4 HOH A 96 496 494 HOH HOH . F 4 HOH A 97 497 484 HOH HOH . F 4 HOH A 98 498 553 HOH HOH . F 4 HOH A 99 499 467 HOH HOH . F 4 HOH A 100 500 550 HOH HOH . F 4 HOH A 101 501 530 HOH HOH . F 4 HOH A 102 502 488 HOH HOH . F 4 HOH A 103 503 438 HOH HOH . F 4 HOH A 104 504 487 HOH HOH . F 4 HOH A 105 505 434 HOH HOH . F 4 HOH A 106 506 501 HOH HOH . F 4 HOH A 107 507 466 HOH HOH . F 4 HOH A 108 508 471 HOH HOH . F 4 HOH A 109 509 521 HOH HOH . F 4 HOH A 110 510 565 HOH HOH . F 4 HOH A 111 511 520 HOH HOH . F 4 HOH A 112 512 440 HOH HOH . F 4 HOH A 113 513 491 HOH HOH . F 4 HOH A 114 514 468 HOH HOH . F 4 HOH A 115 515 436 HOH HOH . F 4 HOH A 116 516 572 HOH HOH . F 4 HOH A 117 517 435 HOH HOH . F 4 HOH A 118 518 478 HOH HOH . F 4 HOH A 119 519 532 HOH HOH . F 4 HOH A 120 520 541 HOH HOH . F 4 HOH A 121 521 499 HOH HOH . F 4 HOH A 122 522 465 HOH HOH . F 4 HOH A 123 523 564 HOH HOH . F 4 HOH A 124 524 535 HOH HOH . F 4 HOH A 125 525 441 HOH HOH . F 4 HOH A 126 526 533 HOH HOH . F 4 HOH A 127 527 444 HOH HOH . F 4 HOH A 128 528 570 HOH HOH . F 4 HOH A 129 529 442 HOH HOH . F 4 HOH A 130 530 445 HOH HOH . F 4 HOH A 131 531 485 HOH HOH . F 4 HOH A 132 532 526 HOH HOH . F 4 HOH A 133 533 477 HOH HOH . F 4 HOH A 134 534 519 HOH HOH . F 4 HOH A 135 535 461 HOH HOH . F 4 HOH A 136 536 545 HOH HOH . F 4 HOH A 137 537 447 HOH HOH . F 4 HOH A 138 538 539 HOH HOH . F 4 HOH A 139 539 527 HOH HOH . F 4 HOH A 140 540 446 HOH HOH . F 4 HOH A 141 541 540 HOH HOH . F 4 HOH A 142 542 450 HOH HOH . F 4 HOH A 143 543 451 HOH HOH . F 4 HOH A 144 544 470 HOH HOH . F 4 HOH A 145 545 452 HOH HOH . F 4 HOH A 146 546 453 HOH HOH . F 4 HOH A 147 547 448 HOH HOH . F 4 HOH A 148 548 523 HOH HOH . F 4 HOH A 149 549 513 HOH HOH . F 4 HOH A 150 550 457 HOH HOH . F 4 HOH A 151 551 455 HOH HOH . F 4 HOH A 152 552 576 HOH HOH . F 4 HOH A 153 553 548 HOH HOH . F 4 HOH A 154 554 459 HOH HOH . F 4 HOH A 155 555 458 HOH HOH . F 4 HOH A 156 556 456 HOH HOH . F 4 HOH A 157 557 558 HOH HOH . F 4 HOH A 158 558 518 HOH HOH . F 4 HOH A 159 559 454 HOH HOH . F 4 HOH A 160 560 567 HOH HOH . F 4 HOH A 161 561 507 HOH HOH . F 4 HOH A 162 562 569 HOH HOH . F 4 HOH A 163 563 516 HOH HOH . F 4 HOH A 164 564 555 HOH HOH . F 4 HOH A 165 565 460 HOH HOH . F 4 HOH A 166 566 515 HOH HOH . F 4 HOH A 167 567 514 HOH HOH . F 4 HOH A 168 568 575 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.814 _atom_site.Cartn_y 29.591 _atom_site.Cartn_z 24.829 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #