data_5MF6
#
_model_server_result.job_id            ftJGyJvSDKEwPUKmi9YZCA 
_model_server_result.datetime_utc      '2024-11-18 03:18:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":407}' 
#
_entry.id    5MF6 
#
_exptl.entry_id    5MF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5MF6 
_cell.length_a            91.3 
_cell.length_b            91.3 
_cell.length_c            144.317 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,U 1 1 
B,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 N ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 180 n n 
C1 C2 EDO sing 181 n n 
C1 H11 EDO sing 182 n n 
C1 H12 EDO sing 183 n n 
O1 HO1 EDO sing 184 n n 
C2 O2 EDO sing 185 n n 
C2 H21 EDO sing 186 n n 
C2 H22 EDO sing 187 n n 
O2 HO2 EDO sing 188 n n 
#
_atom_sites.entry_id                     5MF6 
_atom_sites.fract_transf_matrix[1][1]    0.010953 
_atom_sites.fract_transf_matrix[1][2]    0.006324 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012647 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 401 500 AR6 AR6 . 
D 3 ZN A 1 402 501 ZN ZN . 
E 4 SO4 A 1 403 1 SO4 SO4 . 
F 4 SO4 A 1 404 4 SO4 SO4 . 
G 4 SO4 A 1 405 6 SO4 SO4 . 
H 4 SO4 A 1 406 7 SO4 SO4 . 
I 5 EDO A 1 407 1 EDO EDO . 
J 5 EDO A 1 408 2 EDO EDO . 
K 6 PGE A 1 409 1 PGE PGE . 
L 7 7M2 A 1 410 1 7M2 039 . 
M 2 AR6 B 1 401 500 AR6 AR6 . 
N 3 ZN B 1 402 501 ZN ZN . 
O 4 SO4 B 1 403 2 SO4 SO4 . 
P 4 SO4 B 1 404 3 SO4 SO4 . 
Q 4 SO4 B 1 405 5 SO4 SO4 . 
R 4 SO4 B 1 406 8 SO4 SO4 . 
S 5 EDO B 1 407 3 EDO EDO . 
T 7 7M2 B 1 408 2 7M2 039 . 
U 8 HOH A 1 501 44 HOH HOH . 
U 8 HOH A 2 502 81 HOH HOH . 
U 8 HOH A 3 503 159 HOH HOH . 
U 8 HOH A 4 504 60 HOH HOH . 
U 8 HOH A 5 505 2 HOH HOH . 
U 8 HOH A 6 506 57 HOH HOH . 
U 8 HOH A 7 507 152 HOH HOH . 
U 8 HOH A 8 508 90 HOH HOH . 
U 8 HOH A 9 509 149 HOH HOH . 
U 8 HOH A 10 510 42 HOH HOH . 
U 8 HOH A 11 511 56 HOH HOH . 
U 8 HOH A 12 512 74 HOH HOH . 
U 8 HOH A 13 513 38 HOH HOH . 
U 8 HOH A 14 514 162 HOH HOH . 
U 8 HOH A 15 515 48 HOH HOH . 
U 8 HOH A 16 516 172 HOH HOH . 
U 8 HOH A 17 517 114 HOH HOH . 
U 8 HOH A 18 518 96 HOH HOH . 
U 8 HOH A 19 519 83 HOH HOH . 
U 8 HOH A 20 520 154 HOH HOH . 
U 8 HOH A 21 521 70 HOH HOH . 
U 8 HOH A 22 522 29 HOH HOH . 
U 8 HOH A 23 523 63 HOH HOH . 
U 8 HOH A 24 524 53 HOH HOH . 
U 8 HOH A 25 525 104 HOH HOH . 
U 8 HOH A 26 526 142 HOH HOH . 
U 8 HOH A 27 527 41 HOH HOH . 
U 8 HOH A 28 528 100 HOH HOH . 
U 8 HOH A 29 529 49 HOH HOH . 
U 8 HOH A 30 530 11 HOH HOH . 
U 8 HOH A 31 531 59 HOH HOH . 
U 8 HOH A 32 532 22 HOH HOH . 
U 8 HOH A 33 533 34 HOH HOH . 
U 8 HOH A 34 534 78 HOH HOH . 
U 8 HOH A 35 535 30 HOH HOH . 
U 8 HOH A 36 536 24 HOH HOH . 
U 8 HOH A 37 537 9 HOH HOH . 
U 8 HOH A 38 538 91 HOH HOH . 
U 8 HOH A 39 539 7 HOH HOH . 
U 8 HOH A 40 540 95 HOH HOH . 
U 8 HOH A 41 541 25 HOH HOH . 
U 8 HOH A 42 542 86 HOH HOH . 
U 8 HOH A 43 543 1 HOH HOH . 
U 8 HOH A 44 544 170 HOH HOH . 
U 8 HOH A 45 545 130 HOH HOH . 
U 8 HOH A 46 546 92 HOH HOH . 
U 8 HOH A 47 547 6 HOH HOH . 
U 8 HOH A 48 548 82 HOH HOH . 
U 8 HOH A 49 549 87 HOH HOH . 
U 8 HOH A 50 550 72 HOH HOH . 
U 8 HOH A 51 551 67 HOH HOH . 
U 8 HOH A 52 552 161 HOH HOH . 
U 8 HOH A 53 553 43 HOH HOH . 
U 8 HOH A 54 554 139 HOH HOH . 
U 8 HOH A 55 555 32 HOH HOH . 
U 8 HOH A 56 556 4 HOH HOH . 
U 8 HOH A 57 557 3 HOH HOH . 
U 8 HOH A 58 558 40 HOH HOH . 
U 8 HOH A 59 559 69 HOH HOH . 
U 8 HOH A 60 560 18 HOH HOH . 
U 8 HOH A 61 561 84 HOH HOH . 
U 8 HOH A 62 562 122 HOH HOH . 
U 8 HOH A 63 563 89 HOH HOH . 
U 8 HOH A 64 564 115 HOH HOH . 
U 8 HOH A 65 565 164 HOH HOH . 
U 8 HOH A 66 566 47 HOH HOH . 
U 8 HOH A 67 567 5 HOH HOH . 
U 8 HOH A 68 568 85 HOH HOH . 
U 8 HOH A 69 569 77 HOH HOH . 
U 8 HOH A 70 570 68 HOH HOH . 
U 8 HOH A 71 571 158 HOH HOH . 
U 8 HOH A 72 572 105 HOH HOH . 
U 8 HOH A 73 573 148 HOH HOH . 
U 8 HOH A 74 574 64 HOH HOH . 
U 8 HOH A 75 575 16 HOH HOH . 
U 8 HOH A 76 576 13 HOH HOH . 
U 8 HOH A 77 577 143 HOH HOH . 
U 8 HOH A 78 578 94 HOH HOH . 
U 8 HOH A 79 579 79 HOH HOH . 
U 8 HOH A 80 580 120 HOH HOH . 
U 8 HOH A 81 581 131 HOH HOH . 
U 8 HOH A 82 582 119 HOH HOH . 
U 8 HOH A 83 583 52 HOH HOH . 
U 8 HOH A 84 584 54 HOH HOH . 
U 8 HOH A 85 585 124 HOH HOH . 
U 8 HOH A 86 586 36 HOH HOH . 
U 8 HOH A 87 587 117 HOH HOH . 
U 8 HOH A 88 588 157 HOH HOH . 
U 8 HOH A 89 589 144 HOH HOH . 
U 8 HOH A 90 590 133 HOH HOH . 
U 8 HOH A 91 591 155 HOH HOH . 
U 8 HOH A 92 592 173 HOH HOH . 
U 8 HOH A 93 593 12 HOH HOH . 
U 8 HOH A 94 594 88 HOH HOH . 
U 8 HOH A 95 595 132 HOH HOH . 
U 8 HOH A 96 596 128 HOH HOH . 
U 8 HOH A 97 597 109 HOH HOH . 
U 8 HOH A 98 598 112 HOH HOH . 
U 8 HOH A 99 599 174 HOH HOH . 
U 8 HOH A 100 600 137 HOH HOH . 
V 8 HOH B 1 501 93 HOH HOH . 
V 8 HOH B 2 502 153 HOH HOH . 
V 8 HOH B 3 503 156 HOH HOH . 
V 8 HOH B 4 504 101 HOH HOH . 
V 8 HOH B 5 505 150 HOH HOH . 
V 8 HOH B 6 506 14 HOH HOH . 
V 8 HOH B 7 507 163 HOH HOH . 
V 8 HOH B 8 508 107 HOH HOH . 
V 8 HOH B 9 509 76 HOH HOH . 
V 8 HOH B 10 510 165 HOH HOH . 
V 8 HOH B 11 511 147 HOH HOH . 
V 8 HOH B 12 512 17 HOH HOH . 
V 8 HOH B 13 513 61 HOH HOH . 
V 8 HOH B 14 514 167 HOH HOH . 
V 8 HOH B 15 515 118 HOH HOH . 
V 8 HOH B 16 516 50 HOH HOH . 
V 8 HOH B 17 517 31 HOH HOH . 
V 8 HOH B 18 518 20 HOH HOH . 
V 8 HOH B 19 519 127 HOH HOH . 
V 8 HOH B 20 520 116 HOH HOH . 
V 8 HOH B 21 521 46 HOH HOH . 
V 8 HOH B 22 522 125 HOH HOH . 
V 8 HOH B 23 523 168 HOH HOH . 
V 8 HOH B 24 524 21 HOH HOH . 
V 8 HOH B 25 525 146 HOH HOH . 
V 8 HOH B 26 526 102 HOH HOH . 
V 8 HOH B 27 527 10 HOH HOH . 
V 8 HOH B 28 528 45 HOH HOH . 
V 8 HOH B 29 529 62 HOH HOH . 
V 8 HOH B 30 530 99 HOH HOH . 
V 8 HOH B 31 531 19 HOH HOH . 
V 8 HOH B 32 532 141 HOH HOH . 
V 8 HOH B 33 533 71 HOH HOH . 
V 8 HOH B 34 534 55 HOH HOH . 
V 8 HOH B 35 535 37 HOH HOH . 
V 8 HOH B 36 536 108 HOH HOH . 
V 8 HOH B 37 537 145 HOH HOH . 
V 8 HOH B 38 538 129 HOH HOH . 
V 8 HOH B 39 539 26 HOH HOH . 
V 8 HOH B 40 540 151 HOH HOH . 
V 8 HOH B 41 541 126 HOH HOH . 
V 8 HOH B 42 542 73 HOH HOH . 
V 8 HOH B 43 543 160 HOH HOH . 
V 8 HOH B 44 544 134 HOH HOH . 
V 8 HOH B 45 545 123 HOH HOH . 
V 8 HOH B 46 546 65 HOH HOH . 
V 8 HOH B 47 547 8 HOH HOH . 
V 8 HOH B 48 548 23 HOH HOH . 
V 8 HOH B 49 549 106 HOH HOH . 
V 8 HOH B 50 550 27 HOH HOH . 
V 8 HOH B 51 551 51 HOH HOH . 
V 8 HOH B 52 552 111 HOH HOH . 
V 8 HOH B 53 553 66 HOH HOH . 
V 8 HOH B 54 554 166 HOH HOH . 
V 8 HOH B 55 555 35 HOH HOH . 
V 8 HOH B 56 556 103 HOH HOH . 
V 8 HOH B 57 557 138 HOH HOH . 
V 8 HOH B 58 558 121 HOH HOH . 
V 8 HOH B 59 559 80 HOH HOH . 
V 8 HOH B 60 560 15 HOH HOH . 
V 8 HOH B 61 561 169 HOH HOH . 
V 8 HOH B 62 562 58 HOH HOH . 
V 8 HOH B 63 563 39 HOH HOH . 
V 8 HOH B 64 564 113 HOH HOH . 
V 8 HOH B 65 565 136 HOH HOH . 
V 8 HOH B 66 566 135 HOH HOH . 
V 8 HOH B 67 567 140 HOH HOH . 
V 8 HOH B 68 568 171 HOH HOH . 
V 8 HOH B 69 569 98 HOH HOH . 
V 8 HOH B 70 570 28 HOH HOH . 
V 8 HOH B 71 571 75 HOH HOH . 
V 8 HOH B 72 572 33 HOH HOH . 
V 8 HOH B 73 573 97 HOH HOH . 
V 8 HOH B 74 574 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . S 5 123.718 17.818 -56.039 1 53.81 ? C1 EDO 407 B 1 
HETATM 2 O O1 EDO . . . S 5 123.233 16.524 -56.394 1 53.93 ? O1 EDO 407 B 1 
HETATM 3 C C2 EDO . . . S 5 122.581 18.807 -56.233 1 52.53 ? C2 EDO 407 B 1 
HETATM 4 O O2 EDO . . . S 5 121.776 18.525 -57.394 1 58.81 ? O2 EDO 407 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           435 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#