data_5MFN # _model_server_result.job_id Q9wAnKOvVCABJyQwcHeyCQ _model_server_result.datetime_utc '2024-11-25 16:26:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 5MFN # _exptl.entry_id 5MFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MFN _cell.length_a 142.55 _cell.length_b 142.55 _cell.length_c 142.12 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 60 A GLU 67 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A O PRO 100 A PRO 107 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc3 A OE1 GLU 102 A GLU 109 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 A O PRO 142 A PRO 149 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc5 A OE1 GLU 144 A GLU 151 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc6 C CA CA . A CA 301 1_555 B O PRO 142 B PRO 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 C CA CA . A CA 301 1_555 B OE1 GLU 144 B GLU 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc8 B O PRO 58 B PRO 65 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc9 B OE2 GLU 60 B GLU 67 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc10 B O PRO 100 B PRO 107 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc11 B OE1 GLU 102 B GLU 109 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 224 n n C1 O2 MLT sing 225 n n C1 C2 MLT sing 226 n n C2 O3 MLT sing 227 n n C2 C3 MLT sing 228 n n C2 H2 MLT sing 229 n n O3 HO3 MLT sing 230 n n C3 C4 MLT sing 231 n n C3 H31 MLT sing 232 n n C3 H32 MLT sing 233 n n C4 O4 MLT doub 234 n n C4 O5 MLT sing 235 n n O5 HO5 MLT sing 236 n n O2 H6 MLT sing 237 n n # _atom_sites.entry_id 5MFN _atom_sites.fract_transf_matrix[1][1] 0.007015 _atom_sites.fract_transf_matrix[1][2] 0.00405 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 3 CA CA . D 3 MLT A 1 302 2 MLT MLT . E 2 CA B 1 301 1 CA CA . F 2 CA B 1 302 2 CA CA . G 3 MLT B 1 303 1 MLT MLT . H 4 HOH A 1 401 19 HOH HOH . H 4 HOH A 2 402 17 HOH HOH . H 4 HOH A 3 403 4 HOH HOH . H 4 HOH A 4 404 9 HOH HOH . H 4 HOH A 5 405 14 HOH HOH . H 4 HOH A 6 406 16 HOH HOH . H 4 HOH A 7 407 6 HOH HOH . H 4 HOH A 8 408 18 HOH HOH . I 4 HOH B 1 401 3 HOH HOH . I 4 HOH B 2 402 10 HOH HOH . I 4 HOH B 3 403 8 HOH HOH . I 4 HOH B 4 404 20 HOH HOH . I 4 HOH B 5 405 1 HOH HOH . I 4 HOH B 6 406 2 HOH HOH . I 4 HOH B 7 407 15 HOH HOH . I 4 HOH B 8 408 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . G 3 56.898 -30.199 -6.521 1 105.87 ? C1 MLT 303 B 1 HETATM 2 O O1 MLT . . . G 3 56.353 -31.321 -6.271 1 106.24 ? O1 MLT 303 B 1 HETATM 3 O O2 MLT . . . G 3 58.109 -30.035 -6.2 1 104.17 ? O2 MLT 303 B 1 HETATM 4 C C2 MLT . . . G 3 56.132 -29.062 -7.243 1 106.39 ? C2 MLT 303 B 1 HETATM 5 O O3 MLT . . . G 3 56.356 -27.798 -6.658 1 101.43 ? O3 MLT 303 B 1 HETATM 6 C C3 MLT . . . G 3 54.637 -29.422 -7.428 1 109.36 ? C3 MLT 303 B 1 HETATM 7 C C4 MLT . . . G 3 53.644 -28.483 -8.141 1 108.24 ? C4 MLT 303 B 1 HETATM 8 O O4 MLT . . . G 3 53.991 -27.315 -8.5 1 106.94 ? O4 MLT 303 B 1 HETATM 9 O O5 MLT . . . G 3 52.465 -28.918 -8.359 1 106.12 ? O5 MLT 303 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #