data_5MFP
#
_model_server_result.job_id            kOc2S7PON854Xtwq7a1YnQ 
_model_server_result.datetime_utc      '2024-11-18 02:26:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mfp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":408}' 
#
_entry.id    5MFP 
#
_exptl.entry_id    5MFP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5MFP 
_cell.length_a            91.38 
_cell.length_b            91.38 
_cell.length_c            144.148 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MFP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,X 1 1 
B,N,O,P,Q,R,S,T,U,V,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
? 5 U N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 178 n n 
C1 C2 EDO sing 179 n n 
C1 H11 EDO sing 180 n n 
C1 H12 EDO sing 181 n n 
O1 HO1 EDO sing 182 n n 
C2 O2 EDO sing 183 n n 
C2 H21 EDO sing 184 n n 
C2 H22 EDO sing 185 n n 
O2 HO2 EDO sing 186 n n 
#
_atom_sites.entry_id                     5MFP 
_atom_sites.fract_transf_matrix[1][1]    0.010943 
_atom_sites.fract_transf_matrix[1][2]    0.006318 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012636 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 401 500 AR6 AR6 . 
D 3 ZN A 1 402 501 ZN ZN . 
E 4 SO4 A 1 403 2 SO4 SO4 . 
F 4 SO4 A 1 404 4 SO4 SO4 . 
G 4 SO4 A 1 405 6 SO4 SO4 . 
H 4 SO4 A 1 406 7 SO4 SO4 . 
I 4 SO4 A 1 407 9 SO4 SO4 . 
J 5 EDO A 1 408 1 EDO EDO . 
K 5 EDO A 1 409 2 EDO EDO . 
L 6 PG4 A 1 410 1 PG4 PG4 . 
M 7 7M5 A 1 411 1 7M5 058 . 
N 2 AR6 B 1 401 500 AR6 AR6 . 
O 3 ZN B 1 402 501 ZN ZN . 
P 4 SO4 B 1 403 1 SO4 SO4 . 
Q 4 SO4 B 1 404 3 SO4 SO4 . 
R 4 SO4 B 1 405 5 SO4 SO4 . 
S 4 SO4 B 1 406 8 SO4 SO4 . 
T 8 PGE B 1 407 1 PGE PGE . 
U 5 EDO B 1 408 3 EDO EDO . 
V 5 EDO B 1 409 4 EDO EDO . 
W 7 7M5 B 1 410 2 7M5 058 . 
X 9 HOH A 1 501 155 HOH HOH . 
X 9 HOH A 2 502 135 HOH HOH . 
X 9 HOH A 3 503 108 HOH HOH . 
X 9 HOH A 4 504 137 HOH HOH . 
X 9 HOH A 5 505 32 HOH HOH . 
X 9 HOH A 6 506 152 HOH HOH . 
X 9 HOH A 7 507 69 HOH HOH . 
X 9 HOH A 8 508 1 HOH HOH . 
X 9 HOH A 9 509 174 HOH HOH . 
X 9 HOH A 10 510 53 HOH HOH . 
X 9 HOH A 11 511 44 HOH HOH . 
X 9 HOH A 12 512 52 HOH HOH . 
X 9 HOH A 13 513 66 HOH HOH . 
X 9 HOH A 14 514 82 HOH HOH . 
X 9 HOH A 15 515 163 HOH HOH . 
X 9 HOH A 16 516 138 HOH HOH . 
X 9 HOH A 17 517 33 HOH HOH . 
X 9 HOH A 18 518 176 HOH HOH . 
X 9 HOH A 19 519 64 HOH HOH . 
X 9 HOH A 20 520 169 HOH HOH . 
X 9 HOH A 21 521 11 HOH HOH . 
X 9 HOH A 22 522 23 HOH HOH . 
X 9 HOH A 23 523 132 HOH HOH . 
X 9 HOH A 24 524 48 HOH HOH . 
X 9 HOH A 25 525 157 HOH HOH . 
X 9 HOH A 26 526 35 HOH HOH . 
X 9 HOH A 27 527 127 HOH HOH . 
X 9 HOH A 28 528 96 HOH HOH . 
X 9 HOH A 29 529 21 HOH HOH . 
X 9 HOH A 30 530 148 HOH HOH . 
X 9 HOH A 31 531 43 HOH HOH . 
X 9 HOH A 32 532 39 HOH HOH . 
X 9 HOH A 33 533 65 HOH HOH . 
X 9 HOH A 34 534 78 HOH HOH . 
X 9 HOH A 35 535 92 HOH HOH . 
X 9 HOH A 36 536 84 HOH HOH . 
X 9 HOH A 37 537 115 HOH HOH . 
X 9 HOH A 38 538 91 HOH HOH . 
X 9 HOH A 39 539 126 HOH HOH . 
X 9 HOH A 40 540 24 HOH HOH . 
X 9 HOH A 41 541 9 HOH HOH . 
X 9 HOH A 42 542 61 HOH HOH . 
X 9 HOH A 43 543 3 HOH HOH . 
X 9 HOH A 44 544 114 HOH HOH . 
X 9 HOH A 45 545 56 HOH HOH . 
X 9 HOH A 46 546 167 HOH HOH . 
X 9 HOH A 47 547 50 HOH HOH . 
X 9 HOH A 48 548 77 HOH HOH . 
X 9 HOH A 49 549 98 HOH HOH . 
X 9 HOH A 50 550 159 HOH HOH . 
X 9 HOH A 51 551 143 HOH HOH . 
X 9 HOH A 52 552 51 HOH HOH . 
X 9 HOH A 53 553 59 HOH HOH . 
X 9 HOH A 54 554 16 HOH HOH . 
X 9 HOH A 55 555 88 HOH HOH . 
X 9 HOH A 56 556 47 HOH HOH . 
X 9 HOH A 57 557 177 HOH HOH . 
X 9 HOH A 58 558 8 HOH HOH . 
X 9 HOH A 59 559 112 HOH HOH . 
X 9 HOH A 60 560 113 HOH HOH . 
X 9 HOH A 61 561 10 HOH HOH . 
X 9 HOH A 62 562 73 HOH HOH . 
X 9 HOH A 63 563 83 HOH HOH . 
X 9 HOH A 64 564 5 HOH HOH . 
X 9 HOH A 65 565 6 HOH HOH . 
X 9 HOH A 66 566 146 HOH HOH . 
X 9 HOH A 67 567 67 HOH HOH . 
X 9 HOH A 68 568 130 HOH HOH . 
X 9 HOH A 69 569 139 HOH HOH . 
X 9 HOH A 70 570 71 HOH HOH . 
X 9 HOH A 71 571 105 HOH HOH . 
X 9 HOH A 72 572 29 HOH HOH . 
X 9 HOH A 73 573 54 HOH HOH . 
X 9 HOH A 74 574 122 HOH HOH . 
X 9 HOH A 75 575 93 HOH HOH . 
X 9 HOH A 76 576 166 HOH HOH . 
X 9 HOH A 77 577 106 HOH HOH . 
X 9 HOH A 78 578 7 HOH HOH . 
X 9 HOH A 79 579 36 HOH HOH . 
X 9 HOH A 80 580 27 HOH HOH . 
X 9 HOH A 81 581 164 HOH HOH . 
X 9 HOH A 82 582 75 HOH HOH . 
X 9 HOH A 83 583 58 HOH HOH . 
X 9 HOH A 84 584 34 HOH HOH . 
X 9 HOH A 85 585 124 HOH HOH . 
X 9 HOH A 86 586 15 HOH HOH . 
X 9 HOH A 87 587 76 HOH HOH . 
X 9 HOH A 88 588 85 HOH HOH . 
X 9 HOH A 89 589 142 HOH HOH . 
X 9 HOH A 90 590 147 HOH HOH . 
X 9 HOH A 91 591 162 HOH HOH . 
X 9 HOH A 92 592 57 HOH HOH . 
X 9 HOH A 93 593 109 HOH HOH . 
X 9 HOH A 94 594 151 HOH HOH . 
X 9 HOH A 95 595 153 HOH HOH . 
X 9 HOH A 96 596 86 HOH HOH . 
X 9 HOH A 97 597 133 HOH HOH . 
X 9 HOH A 98 598 131 HOH HOH . 
X 9 HOH A 99 599 118 HOH HOH . 
X 9 HOH A 100 600 121 HOH HOH . 
Y 9 HOH B 1 501 178 HOH HOH . 
Y 9 HOH B 2 502 94 HOH HOH . 
Y 9 HOH B 3 503 99 HOH HOH . 
Y 9 HOH B 4 504 107 HOH HOH . 
Y 9 HOH B 5 505 68 HOH HOH . 
Y 9 HOH B 6 506 116 HOH HOH . 
Y 9 HOH B 7 507 141 HOH HOH . 
Y 9 HOH B 8 508 74 HOH HOH . 
Y 9 HOH B 9 509 158 HOH HOH . 
Y 9 HOH B 10 510 79 HOH HOH . 
Y 9 HOH B 11 511 170 HOH HOH . 
Y 9 HOH B 12 512 4 HOH HOH . 
Y 9 HOH B 13 513 37 HOH HOH . 
Y 9 HOH B 14 514 103 HOH HOH . 
Y 9 HOH B 15 515 12 HOH HOH . 
Y 9 HOH B 16 516 22 HOH HOH . 
Y 9 HOH B 17 517 72 HOH HOH . 
Y 9 HOH B 18 518 70 HOH HOH . 
Y 9 HOH B 19 519 104 HOH HOH . 
Y 9 HOH B 20 520 136 HOH HOH . 
Y 9 HOH B 21 521 90 HOH HOH . 
Y 9 HOH B 22 522 31 HOH HOH . 
Y 9 HOH B 23 523 154 HOH HOH . 
Y 9 HOH B 24 524 40 HOH HOH . 
Y 9 HOH B 25 525 60 HOH HOH . 
Y 9 HOH B 26 526 19 HOH HOH . 
Y 9 HOH B 27 527 172 HOH HOH . 
Y 9 HOH B 28 528 41 HOH HOH . 
Y 9 HOH B 29 529 62 HOH HOH . 
Y 9 HOH B 30 530 26 HOH HOH . 
Y 9 HOH B 31 531 128 HOH HOH . 
Y 9 HOH B 32 532 111 HOH HOH . 
Y 9 HOH B 33 533 2 HOH HOH . 
Y 9 HOH B 34 534 150 HOH HOH . 
Y 9 HOH B 35 535 110 HOH HOH . 
Y 9 HOH B 36 536 101 HOH HOH . 
Y 9 HOH B 37 537 117 HOH HOH . 
Y 9 HOH B 38 538 45 HOH HOH . 
Y 9 HOH B 39 539 18 HOH HOH . 
Y 9 HOH B 40 540 46 HOH HOH . 
Y 9 HOH B 41 541 87 HOH HOH . 
Y 9 HOH B 42 542 89 HOH HOH . 
Y 9 HOH B 43 543 42 HOH HOH . 
Y 9 HOH B 44 544 38 HOH HOH . 
Y 9 HOH B 45 545 30 HOH HOH . 
Y 9 HOH B 46 546 14 HOH HOH . 
Y 9 HOH B 47 547 145 HOH HOH . 
Y 9 HOH B 48 548 140 HOH HOH . 
Y 9 HOH B 49 549 13 HOH HOH . 
Y 9 HOH B 50 550 100 HOH HOH . 
Y 9 HOH B 51 551 156 HOH HOH . 
Y 9 HOH B 52 552 80 HOH HOH . 
Y 9 HOH B 53 553 144 HOH HOH . 
Y 9 HOH B 54 554 168 HOH HOH . 
Y 9 HOH B 55 555 134 HOH HOH . 
Y 9 HOH B 56 556 129 HOH HOH . 
Y 9 HOH B 57 557 81 HOH HOH . 
Y 9 HOH B 58 558 25 HOH HOH . 
Y 9 HOH B 59 559 123 HOH HOH . 
Y 9 HOH B 60 560 125 HOH HOH . 
Y 9 HOH B 61 561 120 HOH HOH . 
Y 9 HOH B 62 562 149 HOH HOH . 
Y 9 HOH B 63 563 49 HOH HOH . 
Y 9 HOH B 64 564 20 HOH HOH . 
Y 9 HOH B 65 565 102 HOH HOH . 
Y 9 HOH B 66 566 161 HOH HOH . 
Y 9 HOH B 67 567 55 HOH HOH . 
Y 9 HOH B 68 568 95 HOH HOH . 
Y 9 HOH B 69 569 28 HOH HOH . 
Y 9 HOH B 70 570 97 HOH HOH . 
Y 9 HOH B 71 571 63 HOH HOH . 
Y 9 HOH B 72 572 17 HOH HOH . 
Y 9 HOH B 73 573 165 HOH HOH . 
Y 9 HOH B 74 574 119 HOH HOH . 
Y 9 HOH B 75 575 160 HOH HOH . 
Y 9 HOH B 76 576 173 HOH HOH . 
Y 9 HOH B 77 577 175 HOH HOH . 
Y 9 HOH B 78 578 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 5 111.662 28.266 -29.85 1 45.98 ? C1 EDO 408 A 1 
HETATM 2 O O1 EDO . . . J 5 112.275 28.218 -28.545 1 47.73 ? O1 EDO 408 A 1 
HETATM 3 C C2 EDO . . . J 5 112.579 28.951 -30.849 1 48.15 ? C2 EDO 408 A 1 
HETATM 4 O O2 EDO . . . J 5 111.93 29.968 -31.644 1 51.95 ? O2 EDO 408 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           528 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#