data_5MFU
#
_model_server_result.job_id            AZe9X4qxNlPqaXO7Ls78zA 
_model_server_result.datetime_utc      '2024-11-08 01:42:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mfu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5MFU 
#
_exptl.entry_id    5MFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MFU 
_cell.length_a            64.78 
_cell.length_b            64.78 
_cell.length_c            135.787 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 35 A GLU 39 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc2 A OD1 ASN 94 A ASN 98 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc3 A OE1 GLU 126 A GLU 130 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc4 A OD2 ASP 156 A ASP 160 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc5 A OD2 ASP 156 A ASP 160 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 D OP1 G . A G 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc7 B MN MN . A MN 501 1_555 F O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc8 C NA NA . A NA 502 1_555 D OP2 G . A G 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc9 C NA NA . A NA 502 1_555 E O2' G . A G 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? 
metalc ? metalc10 C NA NA . A NA 502 1_555 F O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc11 C NA NA . A NA 502 1_555 F O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                G 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP3 P G sing 83 n n 
OP3 HOP3 G sing 84 n n 
P OP1 G doub 85 n n 
P OP2 G sing 86 n n 
P O5' G sing 87 n n 
OP2 HOP2 G sing 88 n n 
O5' C5' G sing 89 n n 
C5' C4' G sing 90 n n 
C5' H5' G sing 91 n n 
C5' "H5''" G sing 92 n n 
C4' O4' G sing 93 n n 
C4' C3' G sing 94 n n 
C4' H4' G sing 95 n n 
O4' C1' G sing 96 n n 
C3' O3' G sing 97 n n 
C3' C2' G sing 98 n n 
C3' H3' G sing 99 n n 
O3' HO3' G sing 100 n n 
C2' O2' G sing 101 n n 
C2' C1' G sing 102 n n 
C2' H2' G sing 103 n n 
O2' HO2' G sing 104 n n 
C1' N9 G sing 105 n n 
C1' H1' G sing 106 n n 
N9 C8 G sing 107 n y 
N9 C4 G sing 108 n y 
C8 N7 G doub 109 n y 
C8 H8 G sing 110 n n 
N7 C5 G sing 111 n y 
C5 C6 G sing 112 n n 
C5 C4 G doub 113 n y 
C6 O6 G doub 114 n n 
C6 N1 G sing 115 n n 
N1 C2 G sing 116 n n 
N1 H1 G sing 117 n n 
C2 N2 G sing 118 n n 
C2 N3 G doub 119 n n 
N2 H21 G sing 120 n n 
N2 H22 G sing 121 n n 
N3 C4 G sing 122 n n 
#
_atom_sites.entry_id                     5MFU 
_atom_sites.fract_transf_matrix[1][1]    0.015437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN Mn . 
C 3 NA A 1 502 502 NA NA . 
D 4 G A 1 503 601 G G . 
E 4 G A 1 504 602 G G . 
F 5 HOH A 1 601 1237 HOH HOH . 
F 5 HOH A 2 602 1217 HOH HOH . 
F 5 HOH A 3 603 998 HOH HOH . 
F 5 HOH A 4 604 1000 HOH HOH . 
F 5 HOH A 5 605 1100 HOH HOH . 
F 5 HOH A 6 606 1215 HOH HOH . 
F 5 HOH A 7 607 66 HOH HOH . 
F 5 HOH A 8 608 26 HOH HOH . 
F 5 HOH A 9 609 1222 HOH HOH . 
F 5 HOH A 10 610 1223 HOH HOH . 
F 5 HOH A 11 611 123 HOH HOH . 
F 5 HOH A 12 612 16 HOH HOH . 
F 5 HOH A 13 613 1018 HOH HOH . 
F 5 HOH A 14 614 1101 HOH HOH . 
F 5 HOH A 15 615 101 HOH HOH . 
F 5 HOH A 16 616 103 HOH HOH . 
F 5 HOH A 17 617 49 HOH HOH . 
F 5 HOH A 18 618 3 HOH HOH . 
F 5 HOH A 19 619 36 HOH HOH . 
F 5 HOH A 20 620 1220 HOH HOH . 
F 5 HOH A 21 621 1209 HOH HOH . 
F 5 HOH A 22 622 670 HOH HOH . 
F 5 HOH A 23 623 1022 HOH HOH . 
F 5 HOH A 24 624 65 HOH HOH . 
F 5 HOH A 25 625 5 HOH HOH . 
F 5 HOH A 26 626 1208 HOH HOH . 
F 5 HOH A 27 627 688 HOH HOH . 
F 5 HOH A 28 628 1204 HOH HOH . 
F 5 HOH A 29 629 17 HOH HOH . 
F 5 HOH A 30 630 1074 HOH HOH . 
F 5 HOH A 31 631 61 HOH HOH . 
F 5 HOH A 32 632 45 HOH HOH . 
F 5 HOH A 33 633 1008 HOH HOH . 
F 5 HOH A 34 634 1206 HOH HOH . 
F 5 HOH A 35 635 1034 HOH HOH . 
F 5 HOH A 36 636 634 HOH HOH . 
F 5 HOH A 37 637 994 HOH HOH . 
F 5 HOH A 38 638 1150 HOH HOH . 
F 5 HOH A 39 639 675 HOH HOH . 
F 5 HOH A 40 640 1043 HOH HOH . 
F 5 HOH A 41 641 35 HOH HOH . 
F 5 HOH A 42 642 29 HOH HOH . 
F 5 HOH A 43 643 647 HOH HOH . 
F 5 HOH A 44 644 717 HOH HOH . 
F 5 HOH A 45 645 43 HOH HOH . 
F 5 HOH A 46 646 50 HOH HOH . 
F 5 HOH A 47 647 34 HOH HOH . 
F 5 HOH A 48 648 20 HOH HOH . 
F 5 HOH A 49 649 107 HOH HOH . 
F 5 HOH A 50 650 705 HOH HOH . 
F 5 HOH A 51 651 111 HOH HOH . 
F 5 HOH A 52 652 55 HOH HOH . 
F 5 HOH A 53 653 561 HOH HOH . 
F 5 HOH A 54 654 198 HOH HOH . 
F 5 HOH A 55 655 345 HOH HOH . 
F 5 HOH A 56 656 654 HOH HOH . 
F 5 HOH A 57 657 347 HOH HOH . 
F 5 HOH A 58 658 13 HOH HOH . 
F 5 HOH A 59 659 645 HOH HOH . 
F 5 HOH A 60 660 576 HOH HOH . 
F 5 HOH A 61 661 27 HOH HOH . 
F 5 HOH A 62 662 11 HOH HOH . 
F 5 HOH A 63 663 1210 HOH HOH . 
F 5 HOH A 64 664 1027 HOH HOH . 
F 5 HOH A 65 665 563 HOH HOH . 
F 5 HOH A 66 666 1232 HOH HOH . 
F 5 HOH A 67 667 633 HOH HOH . 
F 5 HOH A 68 668 1012 HOH HOH . 
F 5 HOH A 69 669 63 HOH HOH . 
F 5 HOH A 70 670 19 HOH HOH . 
F 5 HOH A 71 671 1075 HOH HOH . 
F 5 HOH A 72 672 108 HOH HOH . 
F 5 HOH A 73 673 48 HOH HOH . 
F 5 HOH A 74 674 39 HOH HOH . 
F 5 HOH A 75 675 1094 HOH HOH . 
F 5 HOH A 76 676 62 HOH HOH . 
F 5 HOH A 77 677 1039 HOH HOH . 
F 5 HOH A 78 678 18 HOH HOH . 
F 5 HOH A 79 679 559 HOH HOH . 
F 5 HOH A 80 680 1004 HOH HOH . 
F 5 HOH A 81 681 659 HOH HOH . 
F 5 HOH A 82 682 993 HOH HOH . 
F 5 HOH A 83 683 40 HOH HOH . 
F 5 HOH A 84 684 1236 HOH HOH . 
F 5 HOH A 85 685 1068 HOH HOH . 
F 5 HOH A 86 686 1205 HOH HOH . 
F 5 HOH A 87 687 78 HOH HOH . 
F 5 HOH A 88 688 85 HOH HOH . 
F 5 HOH A 89 689 1109 HOH HOH . 
F 5 HOH A 90 690 344 HOH HOH . 
F 5 HOH A 91 691 56 HOH HOH . 
F 5 HOH A 92 692 1235 HOH HOH . 
F 5 HOH A 93 693 1119 HOH HOH . 
F 5 HOH A 94 694 115 HOH HOH . 
F 5 HOH A 95 695 652 HOH HOH . 
F 5 HOH A 96 696 558 HOH HOH . 
F 5 HOH A 97 697 1218 HOH HOH . 
F 5 HOH A 98 698 1214 HOH HOH . 
F 5 HOH A 99 699 1071 HOH HOH . 
F 5 HOH A 100 700 22 HOH HOH . 
F 5 HOH A 101 701 1221 HOH HOH . 
F 5 HOH A 102 702 1021 HOH HOH . 
F 5 HOH A 103 703 1229 HOH HOH . 
F 5 HOH A 104 704 1098 HOH HOH . 
F 5 HOH A 105 705 667 HOH HOH . 
F 5 HOH A 106 706 1122 HOH HOH . 
F 5 HOH A 107 707 1111 HOH HOH . 
F 5 HOH A 108 708 1233 HOH HOH . 
F 5 HOH A 109 709 1179 HOH HOH . 
F 5 HOH A 110 710 999 HOH HOH . 
F 5 HOH A 111 711 1017 HOH HOH . 
F 5 HOH A 112 712 1013 HOH HOH . 
F 5 HOH A 113 713 348 HOH HOH . 
F 5 HOH A 114 714 830 HOH HOH . 
F 5 HOH A 115 715 1193 HOH HOH . 
F 5 HOH A 116 716 973 HOH HOH . 
F 5 HOH A 117 717 959 HOH HOH . 
F 5 HOH A 118 718 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OP3 G . . . D 4 -9.021 22.526 29.902 1 59.34 ? OP3 G 503 A 1 
HETATM 2 P P G . . . D 4 -10.311 23.246 30.014 1 69.73 ? P G 503 A 1 
HETATM 3 O OP1 G . . . D 4 -10.296 24.456 29.131 1 60.15 ? OP1 G 503 A 1 
HETATM 4 O OP2 G . . . D 4 -11.395 22.218 29.876 1 57.49 ? OP2 G 503 A 1 
HETATM 5 O O5' G . . . D 4 -10.298 23.745 31.524 1 61.84 ? O5' G 503 A 1 
HETATM 6 C C5' G . . . D 4 -9.913 25.079 31.904 1 47.74 ? C5' G 503 A 1 
HETATM 7 C C4' G . . . D 4 -10.617 25.396 33.2 1 44.35 ? C4' G 503 A 1 
HETATM 8 O O4' G . . . D 4 -9.788 25.004 34.332 1 39.04 ? O4' G 503 A 1 
HETATM 9 C C3' G . . . D 4 -10.958 26.855 33.426 1 36.75 ? C3' G 503 A 1 
HETATM 10 O O3' G . . . D 4 -12.18 26.995 34.14 1 35.74 ? O3' G 503 A 1 
HETATM 11 C C2' G . . . D 4 -9.797 27.331 34.264 1 33.52 ? C2' G 503 A 1 
HETATM 12 O O2' G . . . D 4 -10.157 28.491 34.945 1 35.06 ? O2' G 503 A 1 
HETATM 13 C C1' G . . . D 4 -9.573 26.119 35.167 1 34.81 ? C1' G 503 A 1 
HETATM 14 N N9 G . . . D 4 -8.205 26.043 35.655 1 30.9 ? N9 G 503 A 1 
HETATM 15 C C8 G . . . D 4 -7.08 26.34 34.932 1 31.43 ? C8 G 503 A 1 
HETATM 16 N N7 G . . . D 4 -5.978 26.166 35.604 1 32.27 ? N7 G 503 A 1 
HETATM 17 C C5 G . . . D 4 -6.398 25.673 36.827 1 28.86 ? C5 G 503 A 1 
HETATM 18 C C6 G . . . D 4 -5.647 25.311 37.974 1 25.62 ? C6 G 503 A 1 
HETATM 19 O O6 G . . . D 4 -4.419 25.336 38.132 1 23.53 ? O6 G 503 A 1 
HETATM 20 N N1 G . . . D 4 -6.469 24.866 38.999 1 25.56 ? N1 G 503 A 1 
HETATM 21 C C2 G . . . D 4 -7.846 24.84 38.956 1 30.87 ? C2 G 503 A 1 
HETATM 22 N N2 G . . . D 4 -8.466 24.426 40.073 1 31.96 ? N2 G 503 A 1 
HETATM 23 N N3 G . . . D 4 -8.559 25.185 37.893 1 27.24 ? N3 G 503 A 1 
HETATM 24 C C4 G . . . D 4 -7.775 25.606 36.879 1 28.43 ? C4 G 503 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           24 
#