data_5MG2 # _model_server_result.job_id SR0Bm5rp1IWsmIjyDGVWDQ _model_server_result.datetime_utc '2024-11-10 03:31:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1703}' # _entry.id 5MG2 # _exptl.entry_id 5MG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MG2 _cell.length_a 64.739 _cell.length_b 64.739 _cell.length_c 101.082 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 142 n n C1 C2 EDO sing 143 n n C1 H11 EDO sing 144 n n C1 H12 EDO sing 145 n n O1 HO1 EDO sing 146 n n C2 O2 EDO sing 147 n n C2 H21 EDO sing 148 n n C2 H22 EDO sing 149 n n O2 HO2 EDO sing 150 n n # _atom_sites.entry_id 5MG2 _atom_sites.fract_transf_matrix[1][1] 0.015447 _atom_sites.fract_transf_matrix[1][2] 0.008918 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1701 1 EDO EDO . C 2 EDO A 1 1702 2 EDO EDO . D 2 EDO A 1 1703 3 EDO EDO . E 3 7M8 A 1 1704 1 7M8 BAY . F 4 HOH A 1 1801 61 HOH HOH . F 4 HOH A 2 1802 13 HOH HOH . F 4 HOH A 3 1803 60 HOH HOH . F 4 HOH A 4 1804 36 HOH HOH . F 4 HOH A 5 1805 26 HOH HOH . F 4 HOH A 6 1806 4 HOH HOH . F 4 HOH A 7 1807 47 HOH HOH . F 4 HOH A 8 1808 63 HOH HOH . F 4 HOH A 9 1809 30 HOH HOH . F 4 HOH A 10 1810 8 HOH HOH . F 4 HOH A 11 1811 15 HOH HOH . F 4 HOH A 12 1812 54 HOH HOH . F 4 HOH A 13 1813 40 HOH HOH . F 4 HOH A 14 1814 28 HOH HOH . F 4 HOH A 15 1815 16 HOH HOH . F 4 HOH A 16 1816 62 HOH HOH . F 4 HOH A 17 1817 39 HOH HOH . F 4 HOH A 18 1818 27 HOH HOH . F 4 HOH A 19 1819 35 HOH HOH . F 4 HOH A 20 1820 64 HOH HOH . F 4 HOH A 21 1821 59 HOH HOH . F 4 HOH A 22 1822 12 HOH HOH . F 4 HOH A 23 1823 41 HOH HOH . F 4 HOH A 24 1824 20 HOH HOH . F 4 HOH A 25 1825 70 HOH HOH . F 4 HOH A 26 1826 10 HOH HOH . F 4 HOH A 27 1827 46 HOH HOH . F 4 HOH A 28 1828 2 HOH HOH . F 4 HOH A 29 1829 56 HOH HOH . F 4 HOH A 30 1830 22 HOH HOH . F 4 HOH A 31 1831 43 HOH HOH . F 4 HOH A 32 1832 49 HOH HOH . F 4 HOH A 33 1833 42 HOH HOH . F 4 HOH A 34 1834 84 HOH HOH . F 4 HOH A 35 1835 66 HOH HOH . F 4 HOH A 36 1836 9 HOH HOH . F 4 HOH A 37 1837 23 HOH HOH . F 4 HOH A 38 1838 1 HOH HOH . F 4 HOH A 39 1839 65 HOH HOH . F 4 HOH A 40 1840 3 HOH HOH . F 4 HOH A 41 1841 76 HOH HOH . F 4 HOH A 42 1842 24 HOH HOH . F 4 HOH A 43 1843 32 HOH HOH . F 4 HOH A 44 1844 57 HOH HOH . F 4 HOH A 45 1845 14 HOH HOH . F 4 HOH A 46 1846 53 HOH HOH . F 4 HOH A 47 1847 37 HOH HOH . F 4 HOH A 48 1848 48 HOH HOH . F 4 HOH A 49 1849 25 HOH HOH . F 4 HOH A 50 1850 33 HOH HOH . F 4 HOH A 51 1851 50 HOH HOH . F 4 HOH A 52 1852 74 HOH HOH . F 4 HOH A 53 1853 45 HOH HOH . F 4 HOH A 54 1854 71 HOH HOH . F 4 HOH A 55 1855 18 HOH HOH . F 4 HOH A 56 1856 21 HOH HOH . F 4 HOH A 57 1857 58 HOH HOH . F 4 HOH A 58 1858 73 HOH HOH . F 4 HOH A 59 1859 5 HOH HOH . F 4 HOH A 60 1860 19 HOH HOH . F 4 HOH A 61 1861 67 HOH HOH . F 4 HOH A 62 1862 7 HOH HOH . F 4 HOH A 63 1863 17 HOH HOH . F 4 HOH A 64 1864 80 HOH HOH . F 4 HOH A 65 1865 29 HOH HOH . F 4 HOH A 66 1866 38 HOH HOH . F 4 HOH A 67 1867 6 HOH HOH . F 4 HOH A 68 1868 11 HOH HOH . F 4 HOH A 69 1869 72 HOH HOH . F 4 HOH A 70 1870 34 HOH HOH . F 4 HOH A 71 1871 77 HOH HOH . F 4 HOH A 72 1872 51 HOH HOH . F 4 HOH A 73 1873 82 HOH HOH . F 4 HOH A 74 1874 81 HOH HOH . F 4 HOH A 75 1875 85 HOH HOH . F 4 HOH A 76 1876 44 HOH HOH . F 4 HOH A 77 1877 78 HOH HOH . F 4 HOH A 78 1878 55 HOH HOH . F 4 HOH A 79 1879 52 HOH HOH . F 4 HOH A 80 1880 31 HOH HOH . F 4 HOH A 81 1881 75 HOH HOH . F 4 HOH A 82 1882 69 HOH HOH . F 4 HOH A 83 1883 68 HOH HOH . F 4 HOH A 84 1884 83 HOH HOH . F 4 HOH A 85 1885 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 13.38 45.087 10.319 1 42.91 ? C1 EDO 1703 A 1 HETATM 2 O O1 EDO . . . D 2 12.067 45.38 10.782 1 49.72 ? O1 EDO 1703 A 1 HETATM 3 C C2 EDO . . . D 2 13.7 46.073 9.211 1 40 ? C2 EDO 1703 A 1 HETATM 4 O O2 EDO . . . D 2 14.742 45.655 8.36 1 45.14 ? O2 EDO 1703 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #