data_5MG5
#
_model_server_result.job_id            mDHMiOsfo2avH_AALZPKkw 
_model_server_result.datetime_utc      '2025-03-09 02:31:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mg5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":200}' 
#
_entry.id    5MG5 
#
_exptl.entry_id    5MG5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MG5 
_cell.length_a            104.793 
_cell.length_b            229.775 
_cell.length_c            311.129 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dodecameric 12 author_and_software_defined_assembly 1 
PISA dodecameric 12 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,J,K,L,M,N,O,Y,Z,AA,CA,DA,EA,FA,KA,LA,MA,NA,OA,PA,TA,UA,VA,WA,XA,YA 1 1 
G,H,I,P,Q,R,S,T,U,V,W,X,BA,GA,HA,IA,JA,QA,RA,SA,ZA,AB,BB,CB,DB,EB,FB,GB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 Y N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 EA N N 
? 4 GA N N 
? 4 IA N N 
? 4 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ASN 87 C ASN 87 1_555 C N SCY 88 C SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 C C SCY 88 C SCY 88 1_555 C N THR 89 C THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 F C ASN 87 F ASN 87 1_555 F N SCY 88 F SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 F C SCY 88 F SCY 88 1_555 F N THR 89 F THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 I C ASN 87 I ASN 87 1_555 I N SCY 88 I SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 I C SCY 88 I SCY 88 1_555 I N THR 89 I THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 L C ASN 87 L ASN 87 1_555 L N SCY 88 L SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 L C SCY 88 L SCY 88 1_555 L N THR 89 L THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 O C ASN 87 O ASN 87 1_555 O N SCY 88 O SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 O C SCY 88 O SCY 88 1_555 O N THR 89 O THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 R C ASN 87 R ASN 87 1_555 R N SCY 88 R SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 R C SCY 88 R SCY 88 1_555 R N THR 89 R THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 U C ASN 87 U ASN 87 1_555 U N SCY 88 U SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 U C SCY 88 U SCY 88 1_555 U N THR 89 U THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 X C ASN 87 X ASN 87 1_555 X N SCY 88 X SCY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 X C SCY 88 X SCY 88 1_555 X N THR 89 X THR 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 B SG CYS 34 B CYS 34 1_555 Y ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc2 B SG CYS 37 B CYS 37 1_555 Y ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc3 B SG CYS 48 B CYS 48 1_555 Y ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc4 B SG CYS 51 B CYS 51 1_555 Y ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc5 E SG CYS 34 E CYS 34 1_555 AA ZN ZN . E ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc6 E SG CYS 37 E CYS 37 1_555 AA ZN ZN . E ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc7 E SG CYS 48 E CYS 48 1_555 AA ZN ZN . E ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc8 E SG CYS 51 E CYS 51 1_555 AA ZN ZN . E ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc9 H SG CYS 34 H CYS 34 1_555 BA ZN ZN . H ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc10 H SG CYS 37 H CYS 37 1_555 BA ZN ZN . H ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc11 H SG CYS 48 H CYS 48 1_555 BA ZN ZN . H ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc12 H SG CYS 51 H CYS 51 1_555 BA ZN ZN . H ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc13 K SG CYS 34 K CYS 34 1_555 CA ZN ZN . K ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc14 K SG CYS 37 K CYS 37 1_555 CA ZN ZN . K ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc15 K SG CYS 48 K CYS 48 1_555 CA ZN ZN . K ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc16 K SG CYS 51 K CYS 51 1_555 CA ZN ZN . K ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc17 N SG CYS 34 N CYS 34 1_555 EA ZN ZN . N ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc18 N SG CYS 37 N CYS 37 1_555 EA ZN ZN . N ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc19 N SG CYS 48 N CYS 48 1_555 EA ZN ZN . N ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc20 N SG CYS 51 N CYS 51 1_555 EA ZN ZN . N ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc21 Q SG CYS 34 Q CYS 34 1_555 GA ZN ZN . Q ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc22 Q SG CYS 37 Q CYS 37 1_555 GA ZN ZN . Q ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc23 Q SG CYS 48 Q CYS 48 1_555 GA ZN ZN . Q ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc24 Q SG CYS 51 Q CYS 51 1_555 GA ZN ZN . Q ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc25 T SG CYS 34 T CYS 34 1_555 IA ZN ZN . T ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc26 T SG CYS 37 T CYS 37 1_555 IA ZN ZN . T ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc27 T SG CYS 48 T CYS 48 1_555 IA ZN ZN . T ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc28 T SG CYS 51 T CYS 51 1_555 IA ZN ZN . T ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc29 W SG CYS 34 W CYS 34 1_555 JA ZN ZN . W ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc30 W SG CYS 37 W CYS 37 1_555 JA ZN ZN . W ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc31 W SG CYS 48 W CYS 48 1_555 JA ZN ZN . W ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc32 W SG CYS 51 W CYS 51 1_555 JA ZN ZN . W ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5MG5 
_atom_sites.fract_transf_matrix[1][1]    0.009543 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 4 ZN B 1 200 200 ZN ZN . 
Z 5 13X C 1 500 500 13X 13X . 
AA 4 ZN E 1 200 200 ZN ZN . 
BA 4 ZN H 1 200 200 ZN ZN . 
CA 4 ZN K 1 200 200 ZN ZN . 
DA 5 13X L 1 500 500 13X 13X . 
EA 4 ZN N 1 200 200 ZN ZN . 
FA 5 13X O 1 500 500 13X 13X . 
GA 4 ZN Q 1 200 200 ZN ZN . 
HA 5 13X R 1 500 500 13X 13X . 
IA 4 ZN T 1 200 200 ZN ZN . 
JA 4 ZN W 1 200 200 ZN ZN . 
KA 6 HOH A 1 401 29 HOH HOH . 
KA 6 HOH A 2 402 52 HOH HOH . 
KA 6 HOH A 3 403 54 HOH HOH . 
KA 6 HOH A 4 404 51 HOH HOH . 
KA 6 HOH A 5 405 58 HOH HOH . 
LA 6 HOH B 1 301 13 HOH HOH . 
LA 6 HOH B 2 302 8 HOH HOH . 
LA 6 HOH B 3 303 25 HOH HOH . 
MA 6 HOH C 1 601 48 HOH HOH . 
MA 6 HOH C 2 602 22 HOH HOH . 
MA 6 HOH C 3 603 44 HOH HOH . 
MA 6 HOH C 4 604 24 HOH HOH . 
MA 6 HOH C 5 605 59 HOH HOH . 
NA 6 HOH D 1 401 35 HOH HOH . 
NA 6 HOH D 2 402 56 HOH HOH . 
NA 6 HOH D 3 403 50 HOH HOH . 
OA 6 HOH E 1 301 27 HOH HOH . 
OA 6 HOH E 2 302 18 HOH HOH . 
PA 6 HOH F 1 401 36 HOH HOH . 
PA 6 HOH F 2 402 20 HOH HOH . 
QA 6 HOH G 1 401 38 HOH HOH . 
QA 6 HOH G 2 402 45 HOH HOH . 
RA 6 HOH H 1 301 37 HOH HOH . 
RA 6 HOH H 2 302 14 HOH HOH . 
RA 6 HOH H 3 303 23 HOH HOH . 
SA 6 HOH I 1 401 43 HOH HOH . 
SA 6 HOH I 2 402 19 HOH HOH . 
TA 6 HOH J 1 401 47 HOH HOH . 
TA 6 HOH J 2 402 61 HOH HOH . 
TA 6 HOH J 3 403 11 HOH HOH . 
TA 6 HOH J 4 404 60 HOH HOH . 
TA 6 HOH J 5 405 55 HOH HOH . 
UA 6 HOH K 1 301 15 HOH HOH . 
VA 6 HOH L 1 601 39 HOH HOH . 
WA 6 HOH M 1 401 7 HOH HOH . 
WA 6 HOH M 2 402 62 HOH HOH . 
WA 6 HOH M 3 403 63 HOH HOH . 
WA 6 HOH M 4 404 57 HOH HOH . 
XA 6 HOH N 1 301 4 HOH HOH . 
XA 6 HOH N 2 302 17 HOH HOH . 
XA 6 HOH N 3 303 53 HOH HOH . 
YA 6 HOH O 1 601 3 HOH HOH . 
ZA 6 HOH P 1 401 40 HOH HOH . 
AB 6 HOH Q 1 301 5 HOH HOH . 
AB 6 HOH Q 2 302 42 HOH HOH . 
BB 6 HOH R 1 601 34 HOH HOH . 
BB 6 HOH R 2 602 46 HOH HOH . 
BB 6 HOH R 3 603 26 HOH HOH . 
CB 6 HOH S 1 401 49 HOH HOH . 
CB 6 HOH S 2 402 31 HOH HOH . 
DB 6 HOH T 1 301 1 HOH HOH . 
EB 6 HOH U 1 401 30 HOH HOH . 
FB 6 HOH V 1 401 2 HOH HOH . 
FB 6 HOH V 2 402 41 HOH HOH . 
FB 6 HOH V 3 403 28 HOH HOH . 
FB 6 HOH V 4 404 16 HOH HOH . 
FB 6 HOH V 5 405 32 HOH HOH . 
FB 6 HOH V 6 406 33 HOH HOH . 
GB 6 HOH X 1 401 12 HOH HOH . 
GB 6 HOH X 2 402 21 HOH HOH . 
GB 6 HOH X 3 403 10 HOH HOH . 
GB 6 HOH X 4 404 6 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         JA 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               42.897 
_atom_site.Cartn_y               -3.123 
_atom_site.Cartn_z               410.007 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        135.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           200 
_atom_site.auth_asym_id          W 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    76 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#