data_5MGB # _model_server_result.job_id 2gzYnjBIZn6xKQPCaXxqzQ _model_server_result.datetime_utc '2024-10-12 19:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":803}' # _entry.id 5MGB # _exptl.entry_id 5MGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MGB _cell.length_a 65.23 _cell.length_b 125.82 _cell.length_c 223.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,M 1 1 B,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 346 n n PA O2A NAD sing 347 n n PA O5B NAD sing 348 n n PA O3 NAD sing 349 n n O2A HOA2 NAD sing 350 n n O5B C5B NAD sing 351 n n C5B C4B NAD sing 352 n n C5B H51A NAD sing 353 n n C5B H52A NAD sing 354 n n C4B O4B NAD sing 355 n n C4B C3B NAD sing 356 n n C4B H4B NAD sing 357 n n O4B C1B NAD sing 358 n n C3B O3B NAD sing 359 n n C3B C2B NAD sing 360 n n C3B H3B NAD sing 361 n n O3B HO3A NAD sing 362 n n C2B O2B NAD sing 363 n n C2B C1B NAD sing 364 n n C2B H2B NAD sing 365 n n O2B HO2A NAD sing 366 n n C1B N9A NAD sing 367 n n C1B H1B NAD sing 368 n n N9A C8A NAD sing 369 n y N9A C4A NAD sing 370 n y C8A N7A NAD doub 371 n y C8A H8A NAD sing 372 n n N7A C5A NAD sing 373 n y C5A C6A NAD sing 374 n y C5A C4A NAD doub 375 n y C6A N6A NAD sing 376 n n C6A N1A NAD doub 377 n y N6A H61A NAD sing 378 n n N6A H62A NAD sing 379 n n N1A C2A NAD sing 380 n y C2A N3A NAD doub 381 n y C2A H2A NAD sing 382 n n N3A C4A NAD sing 383 n y O3 PN NAD sing 384 n n PN O1N NAD doub 385 n n PN O2N NAD sing 386 n n PN O5D NAD sing 387 n n O5D C5D NAD sing 388 n n C5D C4D NAD sing 389 n n C5D H51N NAD sing 390 n n C5D H52N NAD sing 391 n n C4D O4D NAD sing 392 n n C4D C3D NAD sing 393 n n C4D H4D NAD sing 394 n n O4D C1D NAD sing 395 n n C3D O3D NAD sing 396 n n C3D C2D NAD sing 397 n n C3D H3D NAD sing 398 n n O3D HO3N NAD sing 399 n n C2D O2D NAD sing 400 n n C2D C1D NAD sing 401 n n C2D H2D NAD sing 402 n n O2D HO2N NAD sing 403 n n C1D N1N NAD sing 404 n n C1D H1D NAD sing 405 n n N1N C2N NAD sing 406 n y N1N C6N NAD doub 407 n y C2N C3N NAD doub 408 n y C2N H2N NAD sing 409 n n C3N C7N NAD sing 410 n n C3N C4N NAD sing 411 n y C7N O7N NAD doub 412 n n C7N N7N NAD sing 413 n n N7N H71N NAD sing 414 n n N7N H72N NAD sing 415 n n C4N C5N NAD doub 416 n y C4N H4N NAD sing 417 n n C5N C6N NAD sing 418 n y C5N H5N NAD sing 419 n n C6N H6N NAD sing 420 n n # _atom_sites.entry_id 5MGB _atom_sites.fract_transf_matrix[1][1] 0.01533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 801 1 SO4 SO4 . D 2 SO4 A 1 802 2 SO4 SO4 . E 2 SO4 A 1 803 4 SO4 SO4 . F 3 CAA A 1 804 300 CAA CAA . G 4 NAD A 1 805 1 NAD NAD . H 5 GOL A 1 806 1 GOL GOL . I 5 GOL A 1 807 2 GOL GOL . J 2 SO4 B 1 801 3 SO4 SO4 . K 3 CAA B 1 802 300 CAA CAA . L 4 NAD B 1 803 1 NAD NAD . M 6 HOH A 1 901 44 HOH HOH . M 6 HOH A 2 902 40 HOH HOH . M 6 HOH A 3 903 67 HOH HOH . M 6 HOH A 4 904 81 HOH HOH . M 6 HOH A 5 905 90 HOH HOH . M 6 HOH A 6 906 4 HOH HOH . M 6 HOH A 7 907 34 HOH HOH . M 6 HOH A 8 908 53 HOH HOH . M 6 HOH A 9 909 3 HOH HOH . M 6 HOH A 10 910 35 HOH HOH . M 6 HOH A 11 911 17 HOH HOH . M 6 HOH A 12 912 85 HOH HOH . M 6 HOH A 13 913 19 HOH HOH . M 6 HOH A 14 914 26 HOH HOH . M 6 HOH A 15 915 74 HOH HOH . M 6 HOH A 16 916 78 HOH HOH . M 6 HOH A 17 917 73 HOH HOH . M 6 HOH A 18 918 71 HOH HOH . M 6 HOH A 19 919 14 HOH HOH . M 6 HOH A 20 920 36 HOH HOH . M 6 HOH A 21 921 38 HOH HOH . M 6 HOH A 22 922 13 HOH HOH . M 6 HOH A 23 923 93 HOH HOH . M 6 HOH A 24 924 96 HOH HOH . M 6 HOH A 25 925 59 HOH HOH . M 6 HOH A 26 926 45 HOH HOH . M 6 HOH A 27 927 88 HOH HOH . M 6 HOH A 28 928 29 HOH HOH . M 6 HOH A 29 929 80 HOH HOH . M 6 HOH A 30 930 69 HOH HOH . M 6 HOH A 31 931 25 HOH HOH . M 6 HOH A 32 932 20 HOH HOH . M 6 HOH A 33 933 9 HOH HOH . M 6 HOH A 34 934 89 HOH HOH . M 6 HOH A 35 935 50 HOH HOH . M 6 HOH A 36 936 22 HOH HOH . M 6 HOH A 37 937 11 HOH HOH . M 6 HOH A 38 938 23 HOH HOH . M 6 HOH A 39 939 30 HOH HOH . M 6 HOH A 40 940 94 HOH HOH . M 6 HOH A 41 941 92 HOH HOH . M 6 HOH A 42 942 21 HOH HOH . M 6 HOH A 43 943 60 HOH HOH . M 6 HOH A 44 944 10 HOH HOH . M 6 HOH A 45 945 7 HOH HOH . M 6 HOH A 46 946 76 HOH HOH . M 6 HOH A 47 947 18 HOH HOH . M 6 HOH A 48 948 65 HOH HOH . M 6 HOH A 49 949 77 HOH HOH . M 6 HOH A 50 950 95 HOH HOH . M 6 HOH A 51 951 84 HOH HOH . M 6 HOH A 52 952 43 HOH HOH . M 6 HOH A 53 953 63 HOH HOH . M 6 HOH A 54 954 41 HOH HOH . M 6 HOH A 55 955 79 HOH HOH . M 6 HOH A 56 956 82 HOH HOH . N 6 HOH B 1 901 58 HOH HOH . N 6 HOH B 2 902 16 HOH HOH . N 6 HOH B 3 903 51 HOH HOH . N 6 HOH B 4 904 68 HOH HOH . N 6 HOH B 5 905 57 HOH HOH . N 6 HOH B 6 906 32 HOH HOH . N 6 HOH B 7 907 52 HOH HOH . N 6 HOH B 8 908 91 HOH HOH . N 6 HOH B 9 909 66 HOH HOH . N 6 HOH B 10 910 24 HOH HOH . N 6 HOH B 11 911 46 HOH HOH . N 6 HOH B 12 912 64 HOH HOH . N 6 HOH B 13 913 37 HOH HOH . N 6 HOH B 14 914 5 HOH HOH . N 6 HOH B 15 915 28 HOH HOH . N 6 HOH B 16 916 12 HOH HOH . N 6 HOH B 17 917 48 HOH HOH . N 6 HOH B 18 918 15 HOH HOH . N 6 HOH B 19 919 39 HOH HOH . N 6 HOH B 20 920 72 HOH HOH . N 6 HOH B 21 921 56 HOH HOH . N 6 HOH B 22 922 55 HOH HOH . N 6 HOH B 23 923 47 HOH HOH . N 6 HOH B 24 924 8 HOH HOH . N 6 HOH B 25 925 27 HOH HOH . N 6 HOH B 26 926 75 HOH HOH . N 6 HOH B 27 927 33 HOH HOH . N 6 HOH B 28 928 54 HOH HOH . N 6 HOH B 29 929 1 HOH HOH . N 6 HOH B 30 930 2 HOH HOH . N 6 HOH B 31 931 6 HOH HOH . N 6 HOH B 32 932 70 HOH HOH . N 6 HOH B 33 933 86 HOH HOH . N 6 HOH B 34 934 49 HOH HOH . N 6 HOH B 35 935 87 HOH HOH . N 6 HOH B 36 936 62 HOH HOH . N 6 HOH B 37 937 31 HOH HOH . N 6 HOH B 38 938 42 HOH HOH . N 6 HOH B 39 939 83 HOH HOH . N 6 HOH B 40 940 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . L 4 -37.352 27.467 -60.136 1 52.58 ? PA NAD 803 B 1 HETATM 2 O O1A NAD . . . L 4 -36.718 27.429 -61.509 1 52.92 ? O1A NAD 803 B 1 HETATM 3 O O2A NAD . . . L 4 -38.351 26.41 -59.702 1 51.15 ? O2A NAD 803 B 1 HETATM 4 O O5B NAD . . . L 4 -38.059 28.903 -59.976 1 49.84 ? O5B NAD 803 B 1 HETATM 5 C C5B NAD . . . L 4 -37.426 30.147 -60.255 1 48.2 ? C5B NAD 803 B 1 HETATM 6 C C4B NAD . . . L 4 -38.546 31.134 -60.565 1 48.33 ? C4B NAD 803 B 1 HETATM 7 O O4B NAD . . . L 4 -38.095 32.482 -60.452 1 49.01 ? O4B NAD 803 B 1 HETATM 8 C C3B NAD . . . L 4 -39.096 30.977 -61.978 1 48.82 ? C3B NAD 803 B 1 HETATM 9 O O3B NAD . . . L 4 -40.494 30.658 -61.939 1 47.25 ? O3B NAD 803 B 1 HETATM 10 C C2B NAD . . . L 4 -38.817 32.313 -62.674 1 50.6 ? C2B NAD 803 B 1 HETATM 11 O O2B NAD . . . L 4 -39.817 32.681 -63.641 1 46.76 ? O2B NAD 803 B 1 HETATM 12 C C1B NAD . . . L 4 -38.694 33.278 -61.492 1 51.27 ? C1B NAD 803 B 1 HETATM 13 N N9A NAD . . . L 4 -37.85 34.495 -61.657 1 51.02 ? N9A NAD 803 B 1 HETATM 14 C C8A NAD . . . L 4 -36.564 34.538 -62.085 1 51.18 ? C8A NAD 803 B 1 HETATM 15 N N7A NAD . . . L 4 -36.094 35.817 -62.056 1 51.83 ? N7A NAD 803 B 1 HETATM 16 C C5A NAD . . . L 4 -37.084 36.61 -61.585 1 50.04 ? C5A NAD 803 B 1 HETATM 17 C C6A NAD . . . L 4 -37.263 38.06 -61.293 1 49.28 ? C6A NAD 803 B 1 HETATM 18 N N6A NAD . . . L 4 -36.258 38.939 -61.517 1 48.87 ? N6A NAD 803 B 1 HETATM 19 N N1A NAD . . . L 4 -38.469 38.471 -60.81 1 50.14 ? N1A NAD 803 B 1 HETATM 20 C C2A NAD . . . L 4 -39.484 37.601 -60.582 1 49.84 ? C2A NAD 803 B 1 HETATM 21 N N3A NAD . . . L 4 -39.383 36.272 -60.826 1 49.62 ? N3A NAD 803 B 1 HETATM 22 C C4A NAD . . . L 4 -38.238 35.728 -61.317 1 49.15 ? C4A NAD 803 B 1 HETATM 23 O O3 NAD . . . L 4 -36.163 27.466 -59.054 1 53.83 ? O3 NAD 803 B 1 HETATM 24 P PN NAD . . . L 4 -36.37 26.898 -57.556 1 56.11 ? PN NAD 803 B 1 HETATM 25 O O1N NAD . . . L 4 -36.207 25.389 -57.587 1 55.61 ? O1N NAD 803 B 1 HETATM 26 O O2N NAD . . . L 4 -37.634 27.499 -56.983 1 52.31 ? O2N NAD 803 B 1 HETATM 27 O O5D NAD . . . L 4 -35.066 27.493 -56.815 1 55.41 ? O5D NAD 803 B 1 HETATM 28 C C5D NAD . . . L 4 -35.036 28.719 -56.089 1 60.23 ? C5D NAD 803 B 1 HETATM 29 C C4D NAD . . . L 4 -33.752 28.791 -55.255 1 65.75 ? C4D NAD 803 B 1 HETATM 30 O O4D NAD . . . L 4 -33.879 27.961 -54.092 1 70.25 ? O4D NAD 803 B 1 HETATM 31 C C3D NAD . . . L 4 -32.5 28.307 -55.985 1 68.73 ? C3D NAD 803 B 1 HETATM 32 O O3D NAD . . . L 4 -31.409 29.204 -55.742 1 67.3 ? O3D NAD 803 B 1 HETATM 33 C C2D NAD . . . L 4 -32.231 26.918 -55.427 1 71.2 ? C2D NAD 803 B 1 HETATM 34 O O2D NAD . . . L 4 -30.838 26.585 -55.381 1 72.25 ? O2D NAD 803 B 1 HETATM 35 C C1D NAD . . . L 4 -32.84 26.972 -54.022 1 75.2 ? C1D NAD 803 B 1 HETATM 36 N N1N NAD . . . L 4 -33.352 25.694 -53.458 1 85.43 ? N1N NAD 803 B 1 HETATM 37 C C2N NAD . . . L 4 -34.048 24.817 -54.22 1 94.41 ? C2N NAD 803 B 1 HETATM 38 C C3N NAD . . . L 4 -34.536 23.609 -53.711 1 98.82 ? C3N NAD 803 B 1 HETATM 39 C C7N NAD . . . L 4 -35.297 22.687 -54.642 1 102.83 ? C7N NAD 803 B 1 HETATM 40 O O7N NAD . . . L 4 -36.366 22.198 -54.299 1 100.09 ? O7N NAD 803 B 1 HETATM 41 N N7N NAD . . . L 4 -34.793 22.421 -55.853 1 104.86 ? N7N NAD 803 B 1 HETATM 42 C C4N NAD . . . L 4 -34.308 23.308 -52.361 1 95.74 ? C4N NAD 803 B 1 HETATM 43 C C5N NAD . . . L 4 -33.597 24.217 -51.574 1 90.13 ? C5N NAD 803 B 1 HETATM 44 C C6N NAD . . . L 4 -33.136 25.41 -52.147 1 88.87 ? C6N NAD 803 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #