data_5MGB # _model_server_result.job_id Y8d_qTNefVPfsOUOAEvaSg _model_server_result.datetime_utc '2024-11-24 16:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 5MGB # _exptl.entry_id 5MGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 851.607 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETOACETYL-COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MGB _cell.length_a 65.23 _cell.length_b 125.82 _cell.length_c 223.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,M 1 1 B,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N # _chem_comp.formula 'C25 H40 N7 O18 P3 S' _chem_comp.formula_weight 851.607 _chem_comp.id CAA _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETOACETYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CAA sing 70 n y N1A C6A CAA doub 71 n y C2A N3A CAA doub 72 n y C2A H2A CAA sing 73 n n N3A C4A CAA sing 74 n y C4A C5A CAA doub 75 n y C4A N9A CAA sing 76 n y C5A C6A CAA sing 77 n y C5A N7A CAA sing 78 n y C6A N6A CAA sing 79 n n N6A H61A CAA sing 80 n n N6A H62A CAA sing 81 n n N7A C8A CAA doub 82 n y C8A N9A CAA sing 83 n y C8A H8A CAA sing 84 n n N9A C1B CAA sing 85 n n C1B C2B CAA sing 86 n n C1B O4B CAA sing 87 n n C1B H1B CAA sing 88 n n C2B O2B CAA sing 89 n n C2B C3B CAA sing 90 n n C2B H2B CAA sing 91 n n O2B HO2A CAA sing 92 n n C3B O3B CAA sing 93 n n C3B C4B CAA sing 94 n n C3B H3B CAA sing 95 n n O3B P3B CAA sing 96 n n P3B O7A CAA doub 97 n n P3B O8A CAA sing 98 n n P3B O9A CAA sing 99 n n O8A HOA8 CAA sing 100 n n O9A HOA9 CAA sing 101 n n C4B O4B CAA sing 102 n n C4B C5B CAA sing 103 n n C4B H4B CAA sing 104 n n C5B O5B CAA sing 105 n n C5B H51A CAA sing 106 n n C5B H52A CAA sing 107 n n O5B P1A CAA sing 108 n n P1A O1A CAA doub 109 n n P1A O2A CAA sing 110 n n P1A O3A CAA sing 111 n n O2A HOA2 CAA sing 112 n n O3A P2A CAA sing 113 n n P2A O4A CAA doub 114 n n P2A O5A CAA sing 115 n n P2A O6A CAA sing 116 n n O5A HOA5 CAA sing 117 n n O6A CCP CAA sing 118 n n CBP CCP CAA sing 119 n n CBP CDP CAA sing 120 n n CBP CEP CAA sing 121 n n CBP CAP CAA sing 122 n n CCP H121 CAA sing 123 n n CCP H122 CAA sing 124 n n CDP H131 CAA sing 125 n n CDP H132 CAA sing 126 n n CDP H133 CAA sing 127 n n CEP H141 CAA sing 128 n n CEP H142 CAA sing 129 n n CEP H143 CAA sing 130 n n CAP OAP CAA sing 131 n n CAP C9P CAA sing 132 n n CAP H10 CAA sing 133 n n OAP HO1 CAA sing 134 n n C9P O9P CAA doub 135 n n C9P N8P CAA sing 136 n n N8P C7P CAA sing 137 n n N8P HN8 CAA sing 138 n n C7P C6P CAA sing 139 n n C7P H71 CAA sing 140 n n C7P H72 CAA sing 141 n n C6P C5P CAA sing 142 n n C6P H61 CAA sing 143 n n C6P H62 CAA sing 144 n n C5P O5P CAA doub 145 n n C5P N4P CAA sing 146 n n N4P C3P CAA sing 147 n n N4P HN4 CAA sing 148 n n C3P C2P CAA sing 149 n n C3P H31 CAA sing 150 n n C3P H32 CAA sing 151 n n C2P S1P CAA sing 152 n n C2P H21 CAA sing 153 n n C2P H22 CAA sing 154 n n S1P C1 CAA sing 155 n n C1 O1 CAA doub 156 n n C1 C2 CAA sing 157 n n C2 C3 CAA sing 158 n n C2 "H2'1" CAA sing 159 n n C2 "H2'2" CAA sing 160 n n C3 O3 CAA doub 161 n n C3 C4 CAA sing 162 n n C4 "H4'1" CAA sing 163 n n C4 "H4'2" CAA sing 164 n n C4 "H4'3" CAA sing 165 n n # _atom_sites.entry_id 5MGB _atom_sites.fract_transf_matrix[1][1] 0.01533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 801 1 SO4 SO4 . D 2 SO4 A 1 802 2 SO4 SO4 . E 2 SO4 A 1 803 4 SO4 SO4 . F 3 CAA A 1 804 300 CAA CAA . G 4 NAD A 1 805 1 NAD NAD . H 5 GOL A 1 806 1 GOL GOL . I 5 GOL A 1 807 2 GOL GOL . J 2 SO4 B 1 801 3 SO4 SO4 . K 3 CAA B 1 802 300 CAA CAA . L 4 NAD B 1 803 1 NAD NAD . M 6 HOH A 1 901 44 HOH HOH . M 6 HOH A 2 902 40 HOH HOH . M 6 HOH A 3 903 67 HOH HOH . M 6 HOH A 4 904 81 HOH HOH . M 6 HOH A 5 905 90 HOH HOH . M 6 HOH A 6 906 4 HOH HOH . M 6 HOH A 7 907 34 HOH HOH . M 6 HOH A 8 908 53 HOH HOH . M 6 HOH A 9 909 3 HOH HOH . M 6 HOH A 10 910 35 HOH HOH . M 6 HOH A 11 911 17 HOH HOH . M 6 HOH A 12 912 85 HOH HOH . M 6 HOH A 13 913 19 HOH HOH . M 6 HOH A 14 914 26 HOH HOH . M 6 HOH A 15 915 74 HOH HOH . M 6 HOH A 16 916 78 HOH HOH . M 6 HOH A 17 917 73 HOH HOH . M 6 HOH A 18 918 71 HOH HOH . M 6 HOH A 19 919 14 HOH HOH . M 6 HOH A 20 920 36 HOH HOH . M 6 HOH A 21 921 38 HOH HOH . M 6 HOH A 22 922 13 HOH HOH . M 6 HOH A 23 923 93 HOH HOH . M 6 HOH A 24 924 96 HOH HOH . M 6 HOH A 25 925 59 HOH HOH . M 6 HOH A 26 926 45 HOH HOH . M 6 HOH A 27 927 88 HOH HOH . M 6 HOH A 28 928 29 HOH HOH . M 6 HOH A 29 929 80 HOH HOH . M 6 HOH A 30 930 69 HOH HOH . M 6 HOH A 31 931 25 HOH HOH . M 6 HOH A 32 932 20 HOH HOH . M 6 HOH A 33 933 9 HOH HOH . M 6 HOH A 34 934 89 HOH HOH . M 6 HOH A 35 935 50 HOH HOH . M 6 HOH A 36 936 22 HOH HOH . M 6 HOH A 37 937 11 HOH HOH . M 6 HOH A 38 938 23 HOH HOH . M 6 HOH A 39 939 30 HOH HOH . M 6 HOH A 40 940 94 HOH HOH . M 6 HOH A 41 941 92 HOH HOH . M 6 HOH A 42 942 21 HOH HOH . M 6 HOH A 43 943 60 HOH HOH . M 6 HOH A 44 944 10 HOH HOH . M 6 HOH A 45 945 7 HOH HOH . M 6 HOH A 46 946 76 HOH HOH . M 6 HOH A 47 947 18 HOH HOH . M 6 HOH A 48 948 65 HOH HOH . M 6 HOH A 49 949 77 HOH HOH . M 6 HOH A 50 950 95 HOH HOH . M 6 HOH A 51 951 84 HOH HOH . M 6 HOH A 52 952 43 HOH HOH . M 6 HOH A 53 953 63 HOH HOH . M 6 HOH A 54 954 41 HOH HOH . M 6 HOH A 55 955 79 HOH HOH . M 6 HOH A 56 956 82 HOH HOH . N 6 HOH B 1 901 58 HOH HOH . N 6 HOH B 2 902 16 HOH HOH . N 6 HOH B 3 903 51 HOH HOH . N 6 HOH B 4 904 68 HOH HOH . N 6 HOH B 5 905 57 HOH HOH . N 6 HOH B 6 906 32 HOH HOH . N 6 HOH B 7 907 52 HOH HOH . N 6 HOH B 8 908 91 HOH HOH . N 6 HOH B 9 909 66 HOH HOH . N 6 HOH B 10 910 24 HOH HOH . N 6 HOH B 11 911 46 HOH HOH . N 6 HOH B 12 912 64 HOH HOH . N 6 HOH B 13 913 37 HOH HOH . N 6 HOH B 14 914 5 HOH HOH . N 6 HOH B 15 915 28 HOH HOH . N 6 HOH B 16 916 12 HOH HOH . N 6 HOH B 17 917 48 HOH HOH . N 6 HOH B 18 918 15 HOH HOH . N 6 HOH B 19 919 39 HOH HOH . N 6 HOH B 20 920 72 HOH HOH . N 6 HOH B 21 921 56 HOH HOH . N 6 HOH B 22 922 55 HOH HOH . N 6 HOH B 23 923 47 HOH HOH . N 6 HOH B 24 924 8 HOH HOH . N 6 HOH B 25 925 27 HOH HOH . N 6 HOH B 26 926 75 HOH HOH . N 6 HOH B 27 927 33 HOH HOH . N 6 HOH B 28 928 54 HOH HOH . N 6 HOH B 29 929 1 HOH HOH . N 6 HOH B 30 930 2 HOH HOH . N 6 HOH B 31 931 6 HOH HOH . N 6 HOH B 32 932 70 HOH HOH . N 6 HOH B 33 933 86 HOH HOH . N 6 HOH B 34 934 49 HOH HOH . N 6 HOH B 35 935 87 HOH HOH . N 6 HOH B 36 936 62 HOH HOH . N 6 HOH B 37 937 31 HOH HOH . N 6 HOH B 38 938 42 HOH HOH . N 6 HOH B 39 939 83 HOH HOH . N 6 HOH B 40 940 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CAA . . . F 3 -56.737 9.47 -117.109 1 68.96 ? N1A CAA 804 A 1 HETATM 2 C C2A CAA . . . F 3 -55.592 9.191 -117.771 1 68.56 ? C2A CAA 804 A 1 HETATM 3 N N3A CAA . . . F 3 -54.909 8.052 -117.591 1 68.87 ? N3A CAA 804 A 1 HETATM 4 C C4A CAA . . . F 3 -55.346 7.11 -116.719 1 67.35 ? C4A CAA 804 A 1 HETATM 5 C C5A CAA . . . F 3 -56.581 7.334 -115.958 1 66.24 ? C5A CAA 804 A 1 HETATM 6 C C6A CAA . . . F 3 -57.287 8.614 -116.21 1 68.24 ? C6A CAA 804 A 1 HETATM 7 N N6A CAA . . . F 3 -58.437 8.911 -115.56 1 68.14 ? N6A CAA 804 A 1 HETATM 8 N N7A CAA . . . F 3 -56.756 6.25 -115.188 1 64.18 ? N7A CAA 804 A 1 HETATM 9 C C8A CAA . . . F 3 -55.724 5.405 -115.437 1 64.55 ? C8A CAA 804 A 1 HETATM 10 N N9A CAA . . . F 3 -54.889 5.927 -116.346 1 67.72 ? N9A CAA 804 A 1 HETATM 11 C C1B CAA . . . F 3 -53.651 5.313 -116.879 1 72.78 ? C1B CAA 804 A 1 HETATM 12 C C2B CAA . . . F 3 -52.506 5.306 -115.866 1 76.81 ? C2B CAA 804 A 1 HETATM 13 O O2B CAA . . . F 3 -51.758 6.528 -115.792 1 77.59 ? O2B CAA 804 A 1 HETATM 14 C C3B CAA . . . F 3 -51.697 4.15 -116.417 1 78.83 ? C3B CAA 804 A 1 HETATM 15 O O3B CAA . . . F 3 -50.95 4.578 -117.551 1 84.27 ? O3B CAA 804 A 1 HETATM 16 P P3B CAA . . . F 3 -49.401 4.22 -117.725 1 84.69 ? P3B CAA 804 A 1 HETATM 17 O O7A CAA . . . F 3 -49.086 4.776 -119.1 1 84.15 ? O7A CAA 804 A 1 HETATM 18 O O8A CAA . . . F 3 -48.775 4.944 -116.558 1 77.07 ? O8A CAA 804 A 1 HETATM 19 O O9A CAA . . . F 3 -49.397 2.712 -117.612 1 85.01 ? O9A CAA 804 A 1 HETATM 20 C C4B CAA . . . F 3 -52.739 3.159 -116.906 1 76.79 ? C4B CAA 804 A 1 HETATM 21 O O4B CAA . . . F 3 -53.888 3.945 -117.235 1 73.65 ? O4B CAA 804 A 1 HETATM 22 C C5B CAA . . . F 3 -53.087 2.111 -115.862 1 75.86 ? C5B CAA 804 A 1 HETATM 23 O O5B CAA . . . F 3 -53.277 2.748 -114.596 1 76.14 ? O5B CAA 804 A 1 HETATM 24 P P1A CAA . . . F 3 -52.518 2.243 -113.277 1 77.32 ? P1A CAA 804 A 1 HETATM 25 O O1A CAA . . . F 3 -51.039 2.503 -113.462 1 78.18 ? O1A CAA 804 A 1 HETATM 26 O O2A CAA . . . F 3 -53.191 2.772 -112.035 1 78.94 ? O2A CAA 804 A 1 HETATM 27 O O3A CAA . . . F 3 -52.87 0.669 -113.395 1 76.38 ? O3A CAA 804 A 1 HETATM 28 P P2A CAA . . . F 3 -54.322 0.052 -113.026 1 75.69 ? P2A CAA 804 A 1 HETATM 29 O O4A CAA . . . F 3 -54.644 -1.106 -113.946 1 68.54 ? O4A CAA 804 A 1 HETATM 30 O O5A CAA . . . F 3 -54.31 -0.149 -111.526 1 73.93 ? O5A CAA 804 A 1 HETATM 31 O O6A CAA . . . F 3 -55.407 1.205 -113.359 1 73.29 ? O6A CAA 804 A 1 HETATM 32 C CBP CAA . . . F 3 -57.513 2.233 -112.512 1 66.56 ? CBP CAA 804 A 1 HETATM 33 C CCP CAA . . . F 3 -56.792 0.997 -113.067 1 68.72 ? CCP CAA 804 A 1 HETATM 34 C CDP CAA . . . F 3 -58.575 1.748 -111.533 1 67.98 ? CDP CAA 804 A 1 HETATM 35 C CEP CAA . . . F 3 -58.186 2.973 -113.665 1 67.12 ? CEP CAA 804 A 1 HETATM 36 C CAP CAA . . . F 3 -56.535 3.159 -111.76 1 63.26 ? CAP CAA 804 A 1 HETATM 37 O OAP CAA . . . F 3 -55.589 3.705 -112.685 1 61.49 ? OAP CAA 804 A 1 HETATM 38 C C9P CAA . . . F 3 -57.186 4.307 -111.022 1 60.21 ? C9P CAA 804 A 1 HETATM 39 O O9P CAA . . . F 3 -57.653 4.114 -109.916 1 59.62 ? O9P CAA 804 A 1 HETATM 40 N N8P CAA . . . F 3 -57.191 5.495 -111.638 1 58.74 ? N8P CAA 804 A 1 HETATM 41 C C7P CAA . . . F 3 -57.733 6.72 -111.075 1 56.17 ? C7P CAA 804 A 1 HETATM 42 C C6P CAA . . . F 3 -58.365 7.594 -112.159 1 55.51 ? C6P CAA 804 A 1 HETATM 43 C C5P CAA . . . F 3 -59.147 8.751 -111.567 1 52.56 ? C5P CAA 804 A 1 HETATM 44 O O5P CAA . . . F 3 -58.886 9.164 -110.452 1 54.09 ? O5P CAA 804 A 1 HETATM 45 N N4P CAA . . . F 3 -60.074 9.33 -112.328 1 48.51 ? N4P CAA 804 A 1 HETATM 46 C C3P CAA . . . F 3 -60.696 10.572 -111.91 1 45.33 ? C3P CAA 804 A 1 HETATM 47 C C2P CAA . . . F 3 -61.627 11.142 -112.959 1 43.57 ? C2P CAA 804 A 1 HETATM 48 S S1P CAA . . . F 3 -61.867 12.865 -112.659 1 38.89 ? S1P CAA 804 A 1 HETATM 49 C C1 CAA . . . F 3 -63.127 13.204 -113.724 1 36.91 ? C1 CAA 804 A 1 HETATM 50 O O1 CAA . . . F 3 -63.571 12.289 -114.415 1 35.07 ? O1 CAA 804 A 1 HETATM 51 C C2 CAA . . . F 3 -63.689 14.626 -113.841 1 36.28 ? C2 CAA 804 A 1 HETATM 52 C C3 CAA . . . F 3 -65.122 14.744 -114.378 1 37.09 ? C3 CAA 804 A 1 HETATM 53 O O3 CAA . . . F 3 -66.093 14.398 -113.686 1 35.01 ? O3 CAA 804 A 1 HETATM 54 C C4 CAA . . . F 3 -65.313 15.305 -115.769 1 35.61 ? C4 CAA 804 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #