data_5MGB
#
_model_server_result.job_id            q_l6sEzDTkb2wc9gmJ5dpw 
_model_server_result.datetime_utc      '2024-11-24 16:56:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mgb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":805}' 
#
_entry.id    5MGB 
#
_exptl.entry_id    5MGB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5MGB 
_cell.length_a            65.23 
_cell.length_b            125.82 
_cell.length_c            223.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MGB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,M 1 1 
B,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 346 n n 
PA O2A NAD sing 347 n n 
PA O5B NAD sing 348 n n 
PA O3 NAD sing 349 n n 
O2A HOA2 NAD sing 350 n n 
O5B C5B NAD sing 351 n n 
C5B C4B NAD sing 352 n n 
C5B H51A NAD sing 353 n n 
C5B H52A NAD sing 354 n n 
C4B O4B NAD sing 355 n n 
C4B C3B NAD sing 356 n n 
C4B H4B NAD sing 357 n n 
O4B C1B NAD sing 358 n n 
C3B O3B NAD sing 359 n n 
C3B C2B NAD sing 360 n n 
C3B H3B NAD sing 361 n n 
O3B HO3A NAD sing 362 n n 
C2B O2B NAD sing 363 n n 
C2B C1B NAD sing 364 n n 
C2B H2B NAD sing 365 n n 
O2B HO2A NAD sing 366 n n 
C1B N9A NAD sing 367 n n 
C1B H1B NAD sing 368 n n 
N9A C8A NAD sing 369 n y 
N9A C4A NAD sing 370 n y 
C8A N7A NAD doub 371 n y 
C8A H8A NAD sing 372 n n 
N7A C5A NAD sing 373 n y 
C5A C6A NAD sing 374 n y 
C5A C4A NAD doub 375 n y 
C6A N6A NAD sing 376 n n 
C6A N1A NAD doub 377 n y 
N6A H61A NAD sing 378 n n 
N6A H62A NAD sing 379 n n 
N1A C2A NAD sing 380 n y 
C2A N3A NAD doub 381 n y 
C2A H2A NAD sing 382 n n 
N3A C4A NAD sing 383 n y 
O3 PN NAD sing 384 n n 
PN O1N NAD doub 385 n n 
PN O2N NAD sing 386 n n 
PN O5D NAD sing 387 n n 
O5D C5D NAD sing 388 n n 
C5D C4D NAD sing 389 n n 
C5D H51N NAD sing 390 n n 
C5D H52N NAD sing 391 n n 
C4D O4D NAD sing 392 n n 
C4D C3D NAD sing 393 n n 
C4D H4D NAD sing 394 n n 
O4D C1D NAD sing 395 n n 
C3D O3D NAD sing 396 n n 
C3D C2D NAD sing 397 n n 
C3D H3D NAD sing 398 n n 
O3D HO3N NAD sing 399 n n 
C2D O2D NAD sing 400 n n 
C2D C1D NAD sing 401 n n 
C2D H2D NAD sing 402 n n 
O2D HO2N NAD sing 403 n n 
C1D N1N NAD sing 404 n n 
C1D H1D NAD sing 405 n n 
N1N C2N NAD sing 406 n y 
N1N C6N NAD doub 407 n y 
C2N C3N NAD doub 408 n y 
C2N H2N NAD sing 409 n n 
C3N C7N NAD sing 410 n n 
C3N C4N NAD sing 411 n y 
C7N O7N NAD doub 412 n n 
C7N N7N NAD sing 413 n n 
N7N H71N NAD sing 414 n n 
N7N H72N NAD sing 415 n n 
C4N C5N NAD doub 416 n y 
C4N H4N NAD sing 417 n n 
C5N C6N NAD sing 418 n y 
C5N H5N NAD sing 419 n n 
C6N H6N NAD sing 420 n n 
#
_atom_sites.entry_id                     5MGB 
_atom_sites.fract_transf_matrix[1][1]    0.01533 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 801 1 SO4 SO4 . 
D 2 SO4 A 1 802 2 SO4 SO4 . 
E 2 SO4 A 1 803 4 SO4 SO4 . 
F 3 CAA A 1 804 300 CAA CAA . 
G 4 NAD A 1 805 1 NAD NAD . 
H 5 GOL A 1 806 1 GOL GOL . 
I 5 GOL A 1 807 2 GOL GOL . 
J 2 SO4 B 1 801 3 SO4 SO4 . 
K 3 CAA B 1 802 300 CAA CAA . 
L 4 NAD B 1 803 1 NAD NAD . 
M 6 HOH A 1 901 44 HOH HOH . 
M 6 HOH A 2 902 40 HOH HOH . 
M 6 HOH A 3 903 67 HOH HOH . 
M 6 HOH A 4 904 81 HOH HOH . 
M 6 HOH A 5 905 90 HOH HOH . 
M 6 HOH A 6 906 4 HOH HOH . 
M 6 HOH A 7 907 34 HOH HOH . 
M 6 HOH A 8 908 53 HOH HOH . 
M 6 HOH A 9 909 3 HOH HOH . 
M 6 HOH A 10 910 35 HOH HOH . 
M 6 HOH A 11 911 17 HOH HOH . 
M 6 HOH A 12 912 85 HOH HOH . 
M 6 HOH A 13 913 19 HOH HOH . 
M 6 HOH A 14 914 26 HOH HOH . 
M 6 HOH A 15 915 74 HOH HOH . 
M 6 HOH A 16 916 78 HOH HOH . 
M 6 HOH A 17 917 73 HOH HOH . 
M 6 HOH A 18 918 71 HOH HOH . 
M 6 HOH A 19 919 14 HOH HOH . 
M 6 HOH A 20 920 36 HOH HOH . 
M 6 HOH A 21 921 38 HOH HOH . 
M 6 HOH A 22 922 13 HOH HOH . 
M 6 HOH A 23 923 93 HOH HOH . 
M 6 HOH A 24 924 96 HOH HOH . 
M 6 HOH A 25 925 59 HOH HOH . 
M 6 HOH A 26 926 45 HOH HOH . 
M 6 HOH A 27 927 88 HOH HOH . 
M 6 HOH A 28 928 29 HOH HOH . 
M 6 HOH A 29 929 80 HOH HOH . 
M 6 HOH A 30 930 69 HOH HOH . 
M 6 HOH A 31 931 25 HOH HOH . 
M 6 HOH A 32 932 20 HOH HOH . 
M 6 HOH A 33 933 9 HOH HOH . 
M 6 HOH A 34 934 89 HOH HOH . 
M 6 HOH A 35 935 50 HOH HOH . 
M 6 HOH A 36 936 22 HOH HOH . 
M 6 HOH A 37 937 11 HOH HOH . 
M 6 HOH A 38 938 23 HOH HOH . 
M 6 HOH A 39 939 30 HOH HOH . 
M 6 HOH A 40 940 94 HOH HOH . 
M 6 HOH A 41 941 92 HOH HOH . 
M 6 HOH A 42 942 21 HOH HOH . 
M 6 HOH A 43 943 60 HOH HOH . 
M 6 HOH A 44 944 10 HOH HOH . 
M 6 HOH A 45 945 7 HOH HOH . 
M 6 HOH A 46 946 76 HOH HOH . 
M 6 HOH A 47 947 18 HOH HOH . 
M 6 HOH A 48 948 65 HOH HOH . 
M 6 HOH A 49 949 77 HOH HOH . 
M 6 HOH A 50 950 95 HOH HOH . 
M 6 HOH A 51 951 84 HOH HOH . 
M 6 HOH A 52 952 43 HOH HOH . 
M 6 HOH A 53 953 63 HOH HOH . 
M 6 HOH A 54 954 41 HOH HOH . 
M 6 HOH A 55 955 79 HOH HOH . 
M 6 HOH A 56 956 82 HOH HOH . 
N 6 HOH B 1 901 58 HOH HOH . 
N 6 HOH B 2 902 16 HOH HOH . 
N 6 HOH B 3 903 51 HOH HOH . 
N 6 HOH B 4 904 68 HOH HOH . 
N 6 HOH B 5 905 57 HOH HOH . 
N 6 HOH B 6 906 32 HOH HOH . 
N 6 HOH B 7 907 52 HOH HOH . 
N 6 HOH B 8 908 91 HOH HOH . 
N 6 HOH B 9 909 66 HOH HOH . 
N 6 HOH B 10 910 24 HOH HOH . 
N 6 HOH B 11 911 46 HOH HOH . 
N 6 HOH B 12 912 64 HOH HOH . 
N 6 HOH B 13 913 37 HOH HOH . 
N 6 HOH B 14 914 5 HOH HOH . 
N 6 HOH B 15 915 28 HOH HOH . 
N 6 HOH B 16 916 12 HOH HOH . 
N 6 HOH B 17 917 48 HOH HOH . 
N 6 HOH B 18 918 15 HOH HOH . 
N 6 HOH B 19 919 39 HOH HOH . 
N 6 HOH B 20 920 72 HOH HOH . 
N 6 HOH B 21 921 56 HOH HOH . 
N 6 HOH B 22 922 55 HOH HOH . 
N 6 HOH B 23 923 47 HOH HOH . 
N 6 HOH B 24 924 8 HOH HOH . 
N 6 HOH B 25 925 27 HOH HOH . 
N 6 HOH B 26 926 75 HOH HOH . 
N 6 HOH B 27 927 33 HOH HOH . 
N 6 HOH B 28 928 54 HOH HOH . 
N 6 HOH B 29 929 1 HOH HOH . 
N 6 HOH B 30 930 2 HOH HOH . 
N 6 HOH B 31 931 6 HOH HOH . 
N 6 HOH B 32 932 70 HOH HOH . 
N 6 HOH B 33 933 86 HOH HOH . 
N 6 HOH B 34 934 49 HOH HOH . 
N 6 HOH B 35 935 87 HOH HOH . 
N 6 HOH B 36 936 62 HOH HOH . 
N 6 HOH B 37 937 31 HOH HOH . 
N 6 HOH B 38 938 42 HOH HOH . 
N 6 HOH B 39 939 83 HOH HOH . 
N 6 HOH B 40 940 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . G 4 -37.767 -0.199 -80.212 1 53.85 ? PA NAD 805 A 1 
HETATM 2 O O1A NAD . . . G 4 -36.717 0.292 -79.24 1 52.15 ? O1A NAD 805 A 1 
HETATM 3 O O2A NAD . . . G 4 -39.215 0.214 -80.035 1 53.89 ? O2A NAD 805 A 1 
HETATM 4 O O5B NAD . . . G 4 -37.805 -1.811 -80.243 1 55.7 ? O5B NAD 805 A 1 
HETATM 5 C C5B NAD . . . G 4 -36.808 -2.653 -80.825 1 56.77 ? C5B NAD 805 A 1 
HETATM 6 C C4B NAD . . . G 4 -37.146 -4.077 -80.395 1 59.32 ? C4B NAD 805 A 1 
HETATM 7 O O4B NAD . . . G 4 -36.219 -5.038 -80.914 1 61.4 ? O4B NAD 805 A 1 
HETATM 8 C C3B NAD . . . G 4 -37.119 -4.223 -78.872 1 60.07 ? C3B NAD 805 A 1 
HETATM 9 O O3B NAD . . . G 4 -38.446 -4.447 -78.387 1 60.51 ? O3B NAD 805 A 1 
HETATM 10 C C2B NAD . . . G 4 -36.188 -5.386 -78.582 1 59.4 ? C2B NAD 805 A 1 
HETATM 11 O O2B NAD . . . G 4 -36.749 -6.23 -77.581 1 62.04 ? O2B NAD 805 A 1 
HETATM 12 C C1B NAD . . . G 4 -36.014 -6.075 -79.936 1 59.06 ? C1B NAD 805 A 1 
HETATM 13 N N9A NAD . . . G 4 -34.699 -6.742 -80.174 1 56.37 ? N9A NAD 805 A 1 
HETATM 14 C C8A NAD . . . G 4 -33.471 -6.234 -79.931 1 54.17 ? C8A NAD 805 A 1 
HETATM 15 N N7A NAD . . . G 4 -32.504 -7.112 -80.299 1 53.44 ? N7A NAD 805 A 1 
HETATM 16 C C5A NAD . . . G 4 -33.113 -8.203 -80.797 1 53.4 ? C5A NAD 805 A 1 
HETATM 17 C C6A NAD . . . G 4 -32.682 -9.505 -81.368 1 54.24 ? C6A NAD 805 A 1 
HETATM 18 N N6A NAD . . . G 4 -31.359 -9.793 -81.466 1 54.49 ? N6A NAD 805 A 1 
HETATM 19 N N1A NAD . . . G 4 -33.644 -10.383 -81.774 1 53 ? N1A NAD 805 A 1 
HETATM 20 C C2A NAD . . . G 4 -34.966 -10.098 -81.676 1 52.93 ? C2A NAD 805 A 1 
HETATM 21 N N3A NAD . . . G 4 -35.422 -8.927 -81.168 1 54.46 ? N3A NAD 805 A 1 
HETATM 22 C C4A NAD . . . G 4 -34.564 -7.958 -80.72 1 54.65 ? C4A NAD 805 A 1 
HETATM 23 O O3 NAD . . . G 4 -37.229 0.181 -81.695 1 56.95 ? O3 NAD 805 A 1 
HETATM 24 P PN NAD . . . G 4 -38.155 0.569 -82.968 1 60.78 ? PN NAD 805 A 1 
HETATM 25 O O1N NAD . . . G 4 -38.824 1.893 -82.658 1 56.56 ? O1N NAD 805 A 1 
HETATM 26 O O2N NAD . . . G 4 -39.003 -0.616 -83.432 1 56.18 ? O2N NAD 805 A 1 
HETATM 27 O O5D NAD . . . G 4 -36.997 0.853 -84.05 1 60.51 ? O5D NAD 805 A 1 
HETATM 28 C C5D NAD . . . G 4 -36.323 -0.213 -84.709 1 62.63 ? C5D NAD 805 A 1 
HETATM 29 C C4D NAD . . . G 4 -35.455 0.359 -85.826 1 64.05 ? C4D NAD 805 A 1 
HETATM 30 O O4D NAD . . . G 4 -36.263 1.112 -86.734 1 66.58 ? O4D NAD 805 A 1 
HETATM 31 C C3D NAD . . . G 4 -34.372 1.298 -85.316 1 62.43 ? C3D NAD 805 A 1 
HETATM 32 O O3D NAD . . . G 4 -33.125 0.928 -85.901 1 62.75 ? O3D NAD 805 A 1 
HETATM 33 C C2D NAD . . . G 4 -34.761 2.691 -85.757 1 62.76 ? C2D NAD 805 A 1 
HETATM 34 O O2D NAD . . . G 4 -33.645 3.433 -86.251 1 59.08 ? O2D NAD 805 A 1 
HETATM 35 C C1D NAD . . . G 4 -35.749 2.442 -86.888 1 68.59 ? C1D NAD 805 A 1 
HETATM 36 N N1N NAD . . . G 4 -36.866 3.404 -86.991 1 76.5 ? N1N NAD 805 A 1 
HETATM 37 C C2N NAD . . . G 4 -37.595 3.767 -85.909 1 80.35 ? C2N NAD 805 A 1 
HETATM 38 C C3N NAD . . . G 4 -38.649 4.677 -86.023 1 84.06 ? C3N NAD 805 A 1 
HETATM 39 C C7N NAD . . . G 4 -39.441 5.068 -84.806 1 85.03 ? C7N NAD 805 A 1 
HETATM 40 O O7N NAD . . . G 4 -40.663 5.065 -84.86 1 82.44 ? O7N NAD 805 A 1 
HETATM 41 N N7N NAD . . . G 4 -38.795 5.408 -83.688 1 88.72 ? N7N NAD 805 A 1 
HETATM 42 C C4N NAD . . . G 4 -38.967 5.204 -87.279 1 84.09 ? C4N NAD 805 A 1 
HETATM 43 C C5N NAD . . . G 4 -38.215 4.811 -88.383 1 81.89 ? C5N NAD 805 A 1 
HETATM 44 C C6N NAD . . . G 4 -37.171 3.899 -88.213 1 78.93 ? C6N NAD 805 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           44 
#