data_5MGM # _model_server_result.job_id NiWZcqSD1mM_z_7t6FLYJg _model_server_result.datetime_utc '2024-11-25 04:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1901}' # _entry.id 5MGM # _exptl.entry_id 5MGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.22 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3-pyrimidin-2-yloxyphenyl)ethanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MGM _cell.length_a 94.861 _cell.length_b 94.861 _cell.length_c 32.75 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H10 N2 O2' _chem_comp.formula_weight 214.22 _chem_comp.id 7MZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3-pyrimidin-2-yloxyphenyl)ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C09 7MZ doub 1 n y C08 C07 7MZ sing 2 n y C09 C04 7MZ sing 3 n y C07 C06 7MZ doub 4 n y N12 C13 7MZ doub 5 n y N12 C11 7MZ sing 6 n y C13 C14 7MZ sing 7 n y O03 C02 7MZ doub 8 n n C04 C02 7MZ sing 9 n n C04 C05 7MZ doub 10 n y C06 C05 7MZ sing 11 n y C06 O10 7MZ sing 12 n n C02 C01 7MZ sing 13 n n O10 C11 7MZ sing 14 n n C11 N16 7MZ doub 15 n y C14 C15 7MZ doub 16 n y N16 C15 7MZ sing 17 n y C14 H1 7MZ sing 18 n n C13 H2 7MZ sing 19 n n C15 H3 7MZ sing 20 n n C01 H4 7MZ sing 21 n n C01 H5 7MZ sing 22 n n C01 H6 7MZ sing 23 n n C05 H7 7MZ sing 24 n n C07 H8 7MZ sing 25 n n C08 H9 7MZ sing 26 n n C09 H10 7MZ sing 27 n n # _atom_sites.entry_id 5MGM _atom_sites.fract_transf_matrix[1][1] 0.010542 _atom_sites.fract_transf_matrix[1][2] 0.006086 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7MZ A 1 1901 1 7MZ 2A4 . C 3 HOH A 1 2001 15 HOH HOH . C 3 HOH A 2 2002 20 HOH HOH . C 3 HOH A 3 2003 14 HOH HOH . C 3 HOH A 4 2004 4 HOH HOH . C 3 HOH A 5 2005 3 HOH HOH . C 3 HOH A 6 2006 9 HOH HOH . C 3 HOH A 7 2007 22 HOH HOH . C 3 HOH A 8 2008 1 HOH HOH . C 3 HOH A 9 2009 12 HOH HOH . C 3 HOH A 10 2010 7 HOH HOH . C 3 HOH A 11 2011 21 HOH HOH . C 3 HOH A 12 2012 8 HOH HOH . C 3 HOH A 13 2013 10 HOH HOH . C 3 HOH A 14 2014 5 HOH HOH . C 3 HOH A 15 2015 18 HOH HOH . C 3 HOH A 16 2016 2 HOH HOH . C 3 HOH A 17 2017 13 HOH HOH . C 3 HOH A 18 2018 6 HOH HOH . C 3 HOH A 19 2019 19 HOH HOH . C 3 HOH A 20 2020 11 HOH HOH . C 3 HOH A 21 2021 16 HOH HOH . C 3 HOH A 22 2022 17 HOH HOH . C 3 HOH A 23 2023 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 7MZ . . . B 2 -102.369 45.89 29.134 1 32.56 ? C14 7MZ 1901 A 1 HETATM 2 C C13 7MZ . . . B 2 -103.359 45.618 28.165 1 32.94 ? C13 7MZ 1901 A 1 HETATM 3 C C11 7MZ . . . B 2 -103.432 43.412 28.923 1 33.01 ? C11 7MZ 1901 A 1 HETATM 4 C C15 7MZ . . . B 2 -101.944 44.846 29.979 1 32.35 ? C15 7MZ 1901 A 1 HETATM 5 C C01 7MZ . . . B 2 -108.553 44.724 29.232 1 29.66 ? C01 7MZ 1901 A 1 HETATM 6 C C02 7MZ . . . B 2 -108.784 43.41 28.513 1 29.75 ? C02 7MZ 1901 A 1 HETATM 7 O O03 7MZ . . . B 2 -109.916 43.102 28.191 1 29.09 ? O03 7MZ 1901 A 1 HETATM 8 C C04 7MZ . . . B 2 -107.622 42.481 28.193 1 30.24 ? C04 7MZ 1901 A 1 HETATM 9 C C05 7MZ . . . B 2 -106.339 42.744 28.681 1 30.59 ? C05 7MZ 1901 A 1 HETATM 10 C C06 7MZ . . . B 2 -105.277 41.89 28.373 1 30.95 ? C06 7MZ 1901 A 1 HETATM 11 C C07 7MZ . . . B 2 -105.513 40.762 27.595 1 30.56 ? C07 7MZ 1901 A 1 HETATM 12 C C08 7MZ . . . B 2 -106.788 40.492 27.111 1 30.35 ? C08 7MZ 1901 A 1 HETATM 13 C C09 7MZ . . . B 2 -107.841 41.35 27.409 1 30.33 ? C09 7MZ 1901 A 1 HETATM 14 O O10 7MZ . . . B 2 -103.953 42.091 28.843 1 32.45 ? O10 7MZ 1901 A 1 HETATM 15 N N12 7MZ . . . B 2 -103.853 44.367 28.097 1 33.16 ? N12 7MZ 1901 A 1 HETATM 16 N N16 7MZ . . . B 2 -102.495 43.625 29.842 1 32.53 ? N16 7MZ 1901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #