data_5MH1 # _model_server_result.job_id iMEr4e_OCESWz27usWeT0A _model_server_result.datetime_utc '2025-06-21 01:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5MH1 # _exptl.entry_id 5MH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MH1 _cell.length_a 67.3 _cell.length_b 67.3 _cell.length_c 55 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 112 A PRO 112 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc2 A O LYS 141 A LYS 141 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 D MG MG . A MG 203 1_555 F O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc4 E MG MG . A MG 204 1_555 F O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc5 E MG MG . A MG 204 1_555 F O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 5MH1 _atom_sites.fract_transf_matrix[1][1] 0.014859 _atom_sites.fract_transf_matrix[1][2] 0.008579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 151 GOL GOL . C 3 BMA A 1 202 152 BMA MAN . D 4 MG A 1 203 1 MG MG . E 4 MG A 1 204 2 MG MG . F 5 HOH A 1 301 146 HOH HOH . F 5 HOH A 2 302 219 HOH HOH . F 5 HOH A 3 303 78 HOH HOH . F 5 HOH A 4 304 139 HOH HOH . F 5 HOH A 5 305 89 HOH HOH . F 5 HOH A 6 306 106 HOH HOH . F 5 HOH A 7 307 179 HOH HOH . F 5 HOH A 8 308 73 HOH HOH . F 5 HOH A 9 309 208 HOH HOH . F 5 HOH A 10 310 101 HOH HOH . F 5 HOH A 11 311 64 HOH HOH . F 5 HOH A 12 312 41 HOH HOH . F 5 HOH A 13 313 54 HOH HOH . F 5 HOH A 14 314 132 HOH HOH . F 5 HOH A 15 315 171 HOH HOH . F 5 HOH A 16 316 75 HOH HOH . F 5 HOH A 17 317 93 HOH HOH . F 5 HOH A 18 318 221 HOH HOH . F 5 HOH A 19 319 29 HOH HOH . F 5 HOH A 20 320 141 HOH HOH . F 5 HOH A 21 321 227 HOH HOH . F 5 HOH A 22 322 69 HOH HOH . F 5 HOH A 23 323 123 HOH HOH . F 5 HOH A 24 324 159 HOH HOH . F 5 HOH A 25 325 149 HOH HOH . F 5 HOH A 26 326 68 HOH HOH . F 5 HOH A 27 327 52 HOH HOH . F 5 HOH A 28 328 46 HOH HOH . F 5 HOH A 29 329 109 HOH HOH . F 5 HOH A 30 330 82 HOH HOH . F 5 HOH A 31 331 72 HOH HOH . F 5 HOH A 32 332 36 HOH HOH . F 5 HOH A 33 333 98 HOH HOH . F 5 HOH A 34 334 105 HOH HOH . F 5 HOH A 35 335 6 HOH HOH . F 5 HOH A 36 336 49 HOH HOH . F 5 HOH A 37 337 9 HOH HOH . F 5 HOH A 38 338 28 HOH HOH . F 5 HOH A 39 339 39 HOH HOH . F 5 HOH A 40 340 5 HOH HOH . F 5 HOH A 41 341 3 HOH HOH . F 5 HOH A 42 342 60 HOH HOH . F 5 HOH A 43 343 213 HOH HOH . F 5 HOH A 44 344 48 HOH HOH . F 5 HOH A 45 345 66 HOH HOH . F 5 HOH A 46 346 76 HOH HOH . F 5 HOH A 47 347 94 HOH HOH . F 5 HOH A 48 348 153 HOH HOH . F 5 HOH A 49 349 201 HOH HOH . F 5 HOH A 50 350 145 HOH HOH . F 5 HOH A 51 351 16 HOH HOH . F 5 HOH A 52 352 108 HOH HOH . F 5 HOH A 53 353 27 HOH HOH . F 5 HOH A 54 354 59 HOH HOH . F 5 HOH A 55 355 191 HOH HOH . F 5 HOH A 56 356 204 HOH HOH . F 5 HOH A 57 357 193 HOH HOH . F 5 HOH A 58 358 86 HOH HOH . F 5 HOH A 59 359 8 HOH HOH . F 5 HOH A 60 360 152 HOH HOH . F 5 HOH A 61 361 196 HOH HOH . F 5 HOH A 62 362 214 HOH HOH . F 5 HOH A 63 363 215 HOH HOH . F 5 HOH A 64 364 197 HOH HOH . F 5 HOH A 65 365 144 HOH HOH . F 5 HOH A 66 366 67 HOH HOH . F 5 HOH A 67 367 47 HOH HOH . F 5 HOH A 68 368 38 HOH HOH . F 5 HOH A 69 369 56 HOH HOH . F 5 HOH A 70 370 1 HOH HOH . F 5 HOH A 71 371 57 HOH HOH . F 5 HOH A 72 372 43 HOH HOH . F 5 HOH A 73 373 220 HOH HOH . F 5 HOH A 74 374 74 HOH HOH . F 5 HOH A 75 375 20 HOH HOH . F 5 HOH A 76 376 137 HOH HOH . F 5 HOH A 77 377 53 HOH HOH . F 5 HOH A 78 378 80 HOH HOH . F 5 HOH A 79 379 150 HOH HOH . F 5 HOH A 80 380 91 HOH HOH . F 5 HOH A 81 381 148 HOH HOH . F 5 HOH A 82 382 211 HOH HOH . F 5 HOH A 83 383 51 HOH HOH . F 5 HOH A 84 384 61 HOH HOH . F 5 HOH A 85 385 2 HOH HOH . F 5 HOH A 86 386 17 HOH HOH . F 5 HOH A 87 387 25 HOH HOH . F 5 HOH A 88 388 195 HOH HOH . F 5 HOH A 89 389 50 HOH HOH . F 5 HOH A 90 390 26 HOH HOH . F 5 HOH A 91 391 58 HOH HOH . F 5 HOH A 92 392 128 HOH HOH . F 5 HOH A 93 393 24 HOH HOH . F 5 HOH A 94 394 44 HOH HOH . F 5 HOH A 95 395 37 HOH HOH . F 5 HOH A 96 396 62 HOH HOH . F 5 HOH A 97 397 206 HOH HOH . F 5 HOH A 98 398 15 HOH HOH . F 5 HOH A 99 399 83 HOH HOH . F 5 HOH A 100 400 45 HOH HOH . F 5 HOH A 101 401 87 HOH HOH . F 5 HOH A 102 402 112 HOH HOH . F 5 HOH A 103 403 4 HOH HOH . F 5 HOH A 104 404 10 HOH HOH . F 5 HOH A 105 405 13 HOH HOH . F 5 HOH A 106 406 155 HOH HOH . F 5 HOH A 107 407 96 HOH HOH . F 5 HOH A 108 408 31 HOH HOH . F 5 HOH A 109 409 161 HOH HOH . F 5 HOH A 110 410 14 HOH HOH . F 5 HOH A 111 411 122 HOH HOH . F 5 HOH A 112 412 63 HOH HOH . F 5 HOH A 113 413 21 HOH HOH . F 5 HOH A 114 414 32 HOH HOH . F 5 HOH A 115 415 30 HOH HOH . F 5 HOH A 116 416 23 HOH HOH . F 5 HOH A 117 417 22 HOH HOH . F 5 HOH A 118 418 33 HOH HOH . F 5 HOH A 119 419 99 HOH HOH . F 5 HOH A 120 420 135 HOH HOH . F 5 HOH A 121 421 97 HOH HOH . F 5 HOH A 122 422 151 HOH HOH . F 5 HOH A 123 423 190 HOH HOH . F 5 HOH A 124 424 35 HOH HOH . F 5 HOH A 125 425 42 HOH HOH . F 5 HOH A 126 426 85 HOH HOH . F 5 HOH A 127 427 12 HOH HOH . F 5 HOH A 128 428 18 HOH HOH . F 5 HOH A 129 429 11 HOH HOH . F 5 HOH A 130 430 125 HOH HOH . F 5 HOH A 131 431 218 HOH HOH . F 5 HOH A 132 432 234 HOH HOH . F 5 HOH A 133 433 55 HOH HOH . F 5 HOH A 134 434 40 HOH HOH . F 5 HOH A 135 435 138 HOH HOH . F 5 HOH A 136 436 19 HOH HOH . F 5 HOH A 137 437 202 HOH HOH . F 5 HOH A 138 438 65 HOH HOH . F 5 HOH A 139 439 187 HOH HOH . F 5 HOH A 140 440 143 HOH HOH . F 5 HOH A 141 441 198 HOH HOH . F 5 HOH A 142 442 199 HOH HOH . F 5 HOH A 143 443 173 HOH HOH . F 5 HOH A 144 444 176 HOH HOH . F 5 HOH A 145 445 7 HOH HOH . F 5 HOH A 146 446 229 HOH HOH . F 5 HOH A 147 447 107 HOH HOH . F 5 HOH A 148 448 180 HOH HOH . F 5 HOH A 149 449 129 HOH HOH . F 5 HOH A 150 450 192 HOH HOH . F 5 HOH A 151 451 117 HOH HOH . F 5 HOH A 152 452 102 HOH HOH . F 5 HOH A 153 453 223 HOH HOH . F 5 HOH A 154 454 160 HOH HOH . F 5 HOH A 155 455 104 HOH HOH . F 5 HOH A 156 456 189 HOH HOH . F 5 HOH A 157 457 175 HOH HOH . F 5 HOH A 158 458 114 HOH HOH . F 5 HOH A 159 459 186 HOH HOH . F 5 HOH A 160 460 178 HOH HOH . F 5 HOH A 161 461 166 HOH HOH . F 5 HOH A 162 462 70 HOH HOH . F 5 HOH A 163 463 174 HOH HOH . F 5 HOH A 164 464 103 HOH HOH . F 5 HOH A 165 465 127 HOH HOH . F 5 HOH A 166 466 113 HOH HOH . F 5 HOH A 167 467 169 HOH HOH . F 5 HOH A 168 468 224 HOH HOH . F 5 HOH A 169 469 154 HOH HOH . F 5 HOH A 170 470 225 HOH HOH . F 5 HOH A 171 471 119 HOH HOH . F 5 HOH A 172 472 177 HOH HOH . F 5 HOH A 173 473 233 HOH HOH . F 5 HOH A 174 474 124 HOH HOH . F 5 HOH A 175 475 163 HOH HOH . F 5 HOH A 176 476 116 HOH HOH . F 5 HOH A 177 477 182 HOH HOH . F 5 HOH A 178 478 188 HOH HOH . F 5 HOH A 179 479 34 HOH HOH . F 5 HOH A 180 480 79 HOH HOH . F 5 HOH A 181 481 88 HOH HOH . F 5 HOH A 182 482 77 HOH HOH . F 5 HOH A 183 483 100 HOH HOH . F 5 HOH A 184 484 131 HOH HOH . F 5 HOH A 185 485 110 HOH HOH . F 5 HOH A 186 486 134 HOH HOH . F 5 HOH A 187 487 185 HOH HOH . F 5 HOH A 188 488 194 HOH HOH . F 5 HOH A 189 489 120 HOH HOH . F 5 HOH A 190 490 212 HOH HOH . F 5 HOH A 191 491 228 HOH HOH . F 5 HOH A 192 492 232 HOH HOH . F 5 HOH A 193 493 90 HOH HOH . F 5 HOH A 194 494 133 HOH HOH . F 5 HOH A 195 495 136 HOH HOH . F 5 HOH A 196 496 200 HOH HOH . F 5 HOH A 197 497 203 HOH HOH . F 5 HOH A 198 498 71 HOH HOH . F 5 HOH A 199 499 115 HOH HOH . F 5 HOH A 200 500 165 HOH HOH . F 5 HOH A 201 501 207 HOH HOH . F 5 HOH A 202 502 205 HOH HOH . F 5 HOH A 203 503 118 HOH HOH . F 5 HOH A 204 504 92 HOH HOH . F 5 HOH A 205 505 164 HOH HOH . F 5 HOH A 206 506 170 HOH HOH . F 5 HOH A 207 507 172 HOH HOH . F 5 HOH A 208 508 157 HOH HOH . F 5 HOH A 209 509 226 HOH HOH . F 5 HOH A 210 510 142 HOH HOH . F 5 HOH A 211 511 130 HOH HOH . F 5 HOH A 212 512 167 HOH HOH . F 5 HOH A 213 513 121 HOH HOH . F 5 HOH A 214 514 183 HOH HOH . F 5 HOH A 215 515 230 HOH HOH . F 5 HOH A 216 516 81 HOH HOH . F 5 HOH A 217 517 84 HOH HOH . F 5 HOH A 218 518 231 HOH HOH . F 5 HOH A 219 519 140 HOH HOH . F 5 HOH A 220 520 126 HOH HOH . F 5 HOH A 221 521 111 HOH HOH . F 5 HOH A 222 522 216 HOH HOH . F 5 HOH A 223 523 168 HOH HOH . F 5 HOH A 224 524 184 HOH HOH . F 5 HOH A 225 525 147 HOH HOH . F 5 HOH A 226 526 158 HOH HOH . F 5 HOH A 227 527 222 HOH HOH . F 5 HOH A 228 528 209 HOH HOH . F 5 HOH A 229 529 217 HOH HOH . F 5 HOH A 230 530 95 HOH HOH . F 5 HOH A 231 531 162 HOH HOH . F 5 HOH A 232 532 156 HOH HOH . F 5 HOH A 233 533 181 HOH HOH . F 5 HOH A 234 534 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 11.97 -33.156 6.675 1 20.52 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 12.274 -34.077 7.726 1 24.93 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 10.481 -33.101 6.41 1 14.88 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 10.185 -32.169 5.361 1 12.29 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 9.489 -32.873 7.516 1 13.21 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 9.72 -31.577 8.055 1 10.99 ? O3 GOL 201 A 1 HETATM 7 H H11 GOL . . . B 2 12.49 -33.461 5.765 1 24.62 ? H11 GOL 201 A 1 HETATM 8 H H12 GOL . . . B 2 12.328 -32.162 6.949 1 24.62 ? H12 GOL 201 A 1 HETATM 9 H HO1 GOL . . . B 2 13.229 -34.093 7.875 1 29.92 ? HO1 GOL 201 A 1 HETATM 10 H H2 GOL . . . B 2 10.234 -34.097 6.016 1 17.85 ? H2 GOL 201 A 1 HETATM 11 H HO2 GOL . . . B 2 9.285 -32.319 5.042 1 14.75 ? HO2 GOL 201 A 1 HETATM 12 H H31 GOL . . . B 2 9.613 -33.63 8.293 1 15.85 ? H31 GOL 201 A 1 HETATM 13 H H32 GOL . . . B 2 8.471 -32.94 7.126 1 15.85 ? H32 GOL 201 A 1 HETATM 14 H HO3 GOL . . . B 2 9.092 -31.409 8.77 1 13.19 ? HO3 GOL 201 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #