data_5MI3 # _model_server_result.job_id moVpNb2gAA71TZ7EEPJ-4Q _model_server_result.datetime_utc '2024-11-01 07:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mi3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5MI3 # _exptl.entry_id 5MI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MI3 _cell.length_a 68.2 _cell.length_b 244.4 _cell.length_c 61.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 390 A ARG 382 1_555 A N TPO 391 A TPO 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 391 A TPO 383 1_555 A N VAL 392 A VAL 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C ARG 390 B ARG 382 1_555 B N TPO 391 B TPO 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C TPO 391 B TPO 383 1_555 B N VAL 392 B VAL 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A OG1 THR 34 A THR 26 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 C MG MG . A MG 401 1_555 D O3B GDP . A GDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc3 C MG MG . A MG 401 1_555 G O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc4 C MG MG . A MG 401 1_555 G O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 C MG MG . A MG 401 1_555 G O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc6 C MG MG . A MG 401 1_555 G O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 B OG1 THR 34 B THR 26 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc8 E MG MG . B MG 401 1_555 F O3B GDP . B GDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc9 E MG MG . B MG 401 1_555 H O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 E MG MG . B MG 401 1_555 H O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc11 E MG MG . B MG 401 1_555 H O HOH . B HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc12 E MG MG . B MG 401 1_555 H O HOH . B HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MI3 _atom_sites.fract_transf_matrix[1][1] 0.014663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 2 MG MG . D 3 GDP A 1 402 1 GDP GDP . E 2 MG B 1 401 4 MG MG . F 3 GDP B 1 402 2 GDP GDP . G 4 HOH A 1 501 198 HOH HOH . G 4 HOH A 2 502 220 HOH HOH . G 4 HOH A 3 503 45 HOH HOH . G 4 HOH A 4 504 104 HOH HOH . G 4 HOH A 5 505 10 HOH HOH . G 4 HOH A 6 506 73 HOH HOH . G 4 HOH A 7 507 49 HOH HOH . G 4 HOH A 8 508 222 HOH HOH . G 4 HOH A 9 509 43 HOH HOH . G 4 HOH A 10 510 106 HOH HOH . G 4 HOH A 11 511 219 HOH HOH . G 4 HOH A 12 512 83 HOH HOH . G 4 HOH A 13 513 94 HOH HOH . G 4 HOH A 14 514 44 HOH HOH . G 4 HOH A 15 515 200 HOH HOH . G 4 HOH A 16 516 228 HOH HOH . G 4 HOH A 17 517 165 HOH HOH . G 4 HOH A 18 518 9 HOH HOH . G 4 HOH A 19 519 203 HOH HOH . G 4 HOH A 20 520 55 HOH HOH . G 4 HOH A 21 521 99 HOH HOH . G 4 HOH A 22 522 27 HOH HOH . G 4 HOH A 23 523 197 HOH HOH . G 4 HOH A 24 524 46 HOH HOH . G 4 HOH A 25 525 243 HOH HOH . G 4 HOH A 26 526 37 HOH HOH . G 4 HOH A 27 527 13 HOH HOH . G 4 HOH A 28 528 3 HOH HOH . G 4 HOH A 29 529 118 HOH HOH . G 4 HOH A 30 530 223 HOH HOH . G 4 HOH A 31 531 28 HOH HOH . G 4 HOH A 32 532 109 HOH HOH . G 4 HOH A 33 533 122 HOH HOH . G 4 HOH A 34 534 20 HOH HOH . G 4 HOH A 35 535 36 HOH HOH . G 4 HOH A 36 536 16 HOH HOH . G 4 HOH A 37 537 56 HOH HOH . G 4 HOH A 38 538 4 HOH HOH . G 4 HOH A 39 539 29 HOH HOH . G 4 HOH A 40 540 61 HOH HOH . G 4 HOH A 41 541 31 HOH HOH . G 4 HOH A 42 542 145 HOH HOH . G 4 HOH A 43 543 224 HOH HOH . G 4 HOH A 44 544 230 HOH HOH . G 4 HOH A 45 545 33 HOH HOH . G 4 HOH A 46 546 140 HOH HOH . G 4 HOH A 47 547 48 HOH HOH . G 4 HOH A 48 548 229 HOH HOH . G 4 HOH A 49 549 65 HOH HOH . G 4 HOH A 50 550 119 HOH HOH . G 4 HOH A 51 551 240 HOH HOH . G 4 HOH A 52 552 163 HOH HOH . G 4 HOH A 53 553 192 HOH HOH . G 4 HOH A 54 554 108 HOH HOH . G 4 HOH A 55 555 32 HOH HOH . G 4 HOH A 56 556 34 HOH HOH . G 4 HOH A 57 557 218 HOH HOH . G 4 HOH A 58 558 117 HOH HOH . G 4 HOH A 59 559 14 HOH HOH . G 4 HOH A 60 560 57 HOH HOH . G 4 HOH A 61 561 52 HOH HOH . G 4 HOH A 62 562 81 HOH HOH . G 4 HOH A 63 563 152 HOH HOH . G 4 HOH A 64 564 162 HOH HOH . G 4 HOH A 65 565 24 HOH HOH . G 4 HOH A 66 566 196 HOH HOH . G 4 HOH A 67 567 89 HOH HOH . G 4 HOH A 68 568 1 HOH HOH . G 4 HOH A 69 569 92 HOH HOH . G 4 HOH A 70 570 51 HOH HOH . G 4 HOH A 71 571 80 HOH HOH . G 4 HOH A 72 572 15 HOH HOH . G 4 HOH A 73 573 205 HOH HOH . G 4 HOH A 74 574 149 HOH HOH . G 4 HOH A 75 575 85 HOH HOH . G 4 HOH A 76 576 202 HOH HOH . G 4 HOH A 77 577 101 HOH HOH . G 4 HOH A 78 578 62 HOH HOH . G 4 HOH A 79 579 70 HOH HOH . G 4 HOH A 80 580 120 HOH HOH . G 4 HOH A 81 581 54 HOH HOH . G 4 HOH A 82 582 60 HOH HOH . G 4 HOH A 83 583 30 HOH HOH . G 4 HOH A 84 584 71 HOH HOH . G 4 HOH A 85 585 95 HOH HOH . G 4 HOH A 86 586 103 HOH HOH . G 4 HOH A 87 587 97 HOH HOH . G 4 HOH A 88 588 11 HOH HOH . G 4 HOH A 89 589 107 HOH HOH . G 4 HOH A 90 590 59 HOH HOH . G 4 HOH A 91 591 58 HOH HOH . G 4 HOH A 92 592 2 HOH HOH . G 4 HOH A 93 593 25 HOH HOH . G 4 HOH A 94 594 50 HOH HOH . G 4 HOH A 95 595 188 HOH HOH . G 4 HOH A 96 596 98 HOH HOH . G 4 HOH A 97 597 199 HOH HOH . G 4 HOH A 98 598 138 HOH HOH . G 4 HOH A 99 599 148 HOH HOH . G 4 HOH A 100 600 76 HOH HOH . G 4 HOH A 101 601 183 HOH HOH . G 4 HOH A 102 602 115 HOH HOH . G 4 HOH A 103 603 166 HOH HOH . G 4 HOH A 104 604 158 HOH HOH . G 4 HOH A 105 605 22 HOH HOH . G 4 HOH A 106 606 141 HOH HOH . G 4 HOH A 107 607 182 HOH HOH . G 4 HOH A 108 608 18 HOH HOH . G 4 HOH A 109 609 66 HOH HOH . G 4 HOH A 110 610 114 HOH HOH . G 4 HOH A 111 611 221 HOH HOH . G 4 HOH A 112 612 193 HOH HOH . G 4 HOH A 113 613 6 HOH HOH . G 4 HOH A 114 614 5 HOH HOH . G 4 HOH A 115 615 237 HOH HOH . G 4 HOH A 116 616 102 HOH HOH . G 4 HOH A 117 617 110 HOH HOH . G 4 HOH A 118 618 241 HOH HOH . G 4 HOH A 119 619 124 HOH HOH . G 4 HOH A 120 620 194 HOH HOH . G 4 HOH A 121 621 67 HOH HOH . G 4 HOH A 122 622 8 HOH HOH . G 4 HOH A 123 623 21 HOH HOH . G 4 HOH A 124 624 146 HOH HOH . G 4 HOH A 125 625 142 HOH HOH . G 4 HOH A 126 626 77 HOH HOH . G 4 HOH A 127 627 208 HOH HOH . G 4 HOH A 128 628 168 HOH HOH . G 4 HOH A 129 629 174 HOH HOH . G 4 HOH A 130 630 88 HOH HOH . G 4 HOH A 131 631 128 HOH HOH . G 4 HOH A 132 632 147 HOH HOH . G 4 HOH A 133 633 35 HOH HOH . G 4 HOH A 134 634 139 HOH HOH . G 4 HOH A 135 635 79 HOH HOH . G 4 HOH A 136 636 175 HOH HOH . G 4 HOH A 137 637 153 HOH HOH . G 4 HOH A 138 638 160 HOH HOH . G 4 HOH A 139 639 195 HOH HOH . G 4 HOH A 140 640 7 HOH HOH . G 4 HOH A 141 641 171 HOH HOH . G 4 HOH A 142 642 74 HOH HOH . G 4 HOH A 143 643 143 HOH HOH . G 4 HOH A 144 644 159 HOH HOH . G 4 HOH A 145 645 155 HOH HOH . G 4 HOH A 146 646 137 HOH HOH . G 4 HOH A 147 647 63 HOH HOH . G 4 HOH A 148 648 112 HOH HOH . G 4 HOH A 149 649 26 HOH HOH . G 4 HOH A 150 650 72 HOH HOH . G 4 HOH A 151 651 164 HOH HOH . G 4 HOH A 152 652 123 HOH HOH . G 4 HOH A 153 653 105 HOH HOH . G 4 HOH A 154 654 204 HOH HOH . G 4 HOH A 155 655 170 HOH HOH . G 4 HOH A 156 656 185 HOH HOH . G 4 HOH A 157 657 161 HOH HOH . G 4 HOH A 158 658 169 HOH HOH . G 4 HOH A 159 659 144 HOH HOH . G 4 HOH A 160 660 177 HOH HOH . G 4 HOH A 161 661 91 HOH HOH . G 4 HOH A 162 662 150 HOH HOH . G 4 HOH A 163 663 126 HOH HOH . G 4 HOH A 164 664 207 HOH HOH . G 4 HOH A 165 665 93 HOH HOH . G 4 HOH A 166 666 167 HOH HOH . G 4 HOH A 167 667 132 HOH HOH . G 4 HOH A 168 668 19 HOH HOH . G 4 HOH A 169 669 47 HOH HOH . G 4 HOH A 170 670 151 HOH HOH . G 4 HOH A 171 671 242 HOH HOH . G 4 HOH A 172 672 113 HOH HOH . G 4 HOH A 173 673 129 HOH HOH . G 4 HOH A 174 674 136 HOH HOH . G 4 HOH A 175 675 176 HOH HOH . G 4 HOH A 176 676 75 HOH HOH . G 4 HOH A 177 677 154 HOH HOH . H 4 HOH B 1 501 53 HOH HOH . H 4 HOH B 2 502 69 HOH HOH . H 4 HOH B 3 503 17 HOH HOH . H 4 HOH B 4 504 42 HOH HOH . H 4 HOH B 5 505 190 HOH HOH . H 4 HOH B 6 506 226 HOH HOH . H 4 HOH B 7 507 86 HOH HOH . H 4 HOH B 8 508 12 HOH HOH . H 4 HOH B 9 509 225 HOH HOH . H 4 HOH B 10 510 227 HOH HOH . H 4 HOH B 11 511 41 HOH HOH . H 4 HOH B 12 512 134 HOH HOH . H 4 HOH B 13 513 210 HOH HOH . H 4 HOH B 14 514 180 HOH HOH . H 4 HOH B 15 515 133 HOH HOH . H 4 HOH B 16 516 125 HOH HOH . H 4 HOH B 17 517 181 HOH HOH . H 4 HOH B 18 518 214 HOH HOH . H 4 HOH B 19 519 213 HOH HOH . H 4 HOH B 20 520 82 HOH HOH . H 4 HOH B 21 521 179 HOH HOH . H 4 HOH B 22 522 156 HOH HOH . H 4 HOH B 23 523 157 HOH HOH . H 4 HOH B 24 524 233 HOH HOH . H 4 HOH B 25 525 40 HOH HOH . H 4 HOH B 26 526 201 HOH HOH . H 4 HOH B 27 527 39 HOH HOH . H 4 HOH B 28 528 186 HOH HOH . H 4 HOH B 29 529 78 HOH HOH . H 4 HOH B 30 530 38 HOH HOH . H 4 HOH B 31 531 121 HOH HOH . H 4 HOH B 32 532 64 HOH HOH . H 4 HOH B 33 533 178 HOH HOH . H 4 HOH B 34 534 130 HOH HOH . H 4 HOH B 35 535 131 HOH HOH . H 4 HOH B 36 536 173 HOH HOH . H 4 HOH B 37 537 100 HOH HOH . H 4 HOH B 38 538 187 HOH HOH . H 4 HOH B 39 539 116 HOH HOH . H 4 HOH B 40 540 111 HOH HOH . H 4 HOH B 41 541 23 HOH HOH . H 4 HOH B 42 542 244 HOH HOH . H 4 HOH B 43 543 234 HOH HOH . H 4 HOH B 44 544 84 HOH HOH . H 4 HOH B 45 545 90 HOH HOH . H 4 HOH B 46 546 127 HOH HOH . H 4 HOH B 47 547 68 HOH HOH . H 4 HOH B 48 548 87 HOH HOH . H 4 HOH B 49 549 235 HOH HOH . H 4 HOH B 50 550 172 HOH HOH . H 4 HOH B 51 551 212 HOH HOH . H 4 HOH B 52 552 135 HOH HOH . H 4 HOH B 53 553 206 HOH HOH . H 4 HOH B 54 554 211 HOH HOH . H 4 HOH B 55 555 184 HOH HOH . H 4 HOH B 56 556 239 HOH HOH . H 4 HOH B 57 557 236 HOH HOH . H 4 HOH B 58 558 209 HOH HOH . H 4 HOH B 59 559 232 HOH HOH . H 4 HOH B 60 560 96 HOH HOH . H 4 HOH B 61 561 191 HOH HOH . H 4 HOH B 62 562 238 HOH HOH . H 4 HOH B 63 563 215 HOH HOH . H 4 HOH B 64 564 231 HOH HOH . H 4 HOH B 65 565 217 HOH HOH . H 4 HOH B 66 566 216 HOH HOH . H 4 HOH B 67 567 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -13.495 _atom_site.Cartn_y 37.473 _atom_site.Cartn_z -4.236 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.27 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #