data_5MI7 # _model_server_result.job_id qeznhna_7ersPsRfcaL02A _model_server_result.datetime_utc '2024-10-10 15:18:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5MI7 # _exptl.entry_id 5MI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.61 _cell.angle_gamma 90 _cell.entry_id 5MI7 _cell.length_a 195.193 _cell.length_b 51.823 _cell.length_c 108.234 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 561 A CYS 550 1_555 C C01 7NT . A 7NT 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc1 A O GLU 43 A GLU 32 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A OE1 GLU 72 A GLU 61 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A OD1 ASP 75 A ASP 64 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc4 A OD2 ASP 75 A ASP 64 1_555 D CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 D CA CA . A CA 803 1_555 E O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 D CA CA . A CA 803 1_555 E O HOH . A HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 D CA CA . A CA 803 1_555 E O HOH . A HOH 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'C15 H19 N3 O7' _chem_comp.formula_weight 353.327 _chem_comp.id OAN _chem_comp.mon_nstd_flag . _chem_comp.name 'O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUGNAc # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAG OAN sing 275 n n CAH HAH1 OAN sing 276 n n CAH HAH2 OAN sing 277 n n CAH HAH3 OAN sing 278 n n CAG OAN OAN doub 279 n n CAG NAI OAN sing 280 n n NAI CAB OAN sing 281 n n NAI HAI OAN sing 282 n n CAB CAC OAN sing 283 n n CAB CAA OAN sing 284 n n CAB HAB OAN sing 285 n n CAC OAJ OAN sing 286 n n CAC CAD OAN sing 287 n n CAC HAC OAN sing 288 n n OAJ HAJ OAN sing 289 n n CAD OAK OAN sing 290 n n CAD CAE OAN sing 291 n n CAD HAD OAN sing 292 n n OAK HAK OAN sing 293 n n CAE CAF OAN sing 294 n n CAE OAL OAN sing 295 n n CAE HAE OAN sing 296 n n CAF OAM OAN sing 297 n n CAF HAF1 OAN sing 298 n n CAF HAF2 OAN sing 299 n n OAM HAM OAN sing 300 n n OAL CAA OAN sing 301 n n CAA NAY OAN doub 302 z n NAY OAQ OAN sing 303 n n OAQ CAP OAN sing 304 n n CAP OAR OAN doub 305 n n CAP NAO OAN sing 306 n n NAO CAS OAN sing 307 n n NAO HAO OAN sing 308 n n CAS CAT OAN doub 309 n y CAS CAX OAN sing 310 n y CAT CAU OAN sing 311 n y CAT HAT OAN sing 312 n n CAU CAV OAN doub 313 n y CAU HAU OAN sing 314 n n CAV CAW OAN sing 315 n y CAV HAV OAN sing 316 n n CAW CAX OAN doub 317 n y CAW HAW OAN sing 318 n n CAX HAX OAN sing 319 n n # _atom_sites.entry_id 5MI7 _atom_sites.fract_transf_matrix[1][1] 0.005123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAN A 1 801 716 OAN OAN . C 3 7NT A 1 802 717 7NT G5D . D 4 CA A 1 803 718 CA CA . E 5 HOH A 1 901 835 HOH HOH . E 5 HOH A 2 902 779 HOH HOH . E 5 HOH A 3 903 812 HOH HOH . E 5 HOH A 4 904 731 HOH HOH . E 5 HOH A 5 905 838 HOH HOH . E 5 HOH A 6 906 756 HOH HOH . E 5 HOH A 7 907 841 HOH HOH . E 5 HOH A 8 908 856 HOH HOH . E 5 HOH A 9 909 737 HOH HOH . E 5 HOH A 10 910 734 HOH HOH . E 5 HOH A 11 911 770 HOH HOH . E 5 HOH A 12 912 836 HOH HOH . E 5 HOH A 13 913 740 HOH HOH . E 5 HOH A 14 914 721 HOH HOH . E 5 HOH A 15 915 767 HOH HOH . E 5 HOH A 16 916 746 HOH HOH . E 5 HOH A 17 917 788 HOH HOH . E 5 HOH A 18 918 755 HOH HOH . E 5 HOH A 19 919 749 HOH HOH . E 5 HOH A 20 920 804 HOH HOH . E 5 HOH A 21 921 840 HOH HOH . E 5 HOH A 22 922 800 HOH HOH . E 5 HOH A 23 923 802 HOH HOH . E 5 HOH A 24 924 777 HOH HOH . E 5 HOH A 25 925 848 HOH HOH . E 5 HOH A 26 926 790 HOH HOH . E 5 HOH A 27 927 787 HOH HOH . E 5 HOH A 28 928 833 HOH HOH . E 5 HOH A 29 929 742 HOH HOH . E 5 HOH A 30 930 771 HOH HOH . E 5 HOH A 31 931 735 HOH HOH . E 5 HOH A 32 932 831 HOH HOH . E 5 HOH A 33 933 726 HOH HOH . E 5 HOH A 34 934 852 HOH HOH . E 5 HOH A 35 935 826 HOH HOH . E 5 HOH A 36 936 752 HOH HOH . E 5 HOH A 37 937 724 HOH HOH . E 5 HOH A 38 938 743 HOH HOH . E 5 HOH A 39 939 741 HOH HOH . E 5 HOH A 40 940 809 HOH HOH . E 5 HOH A 41 941 816 HOH HOH . E 5 HOH A 42 942 806 HOH HOH . E 5 HOH A 43 943 753 HOH HOH . E 5 HOH A 44 944 720 HOH HOH . E 5 HOH A 45 945 821 HOH HOH . E 5 HOH A 46 946 791 HOH HOH . E 5 HOH A 47 947 801 HOH HOH . E 5 HOH A 48 948 785 HOH HOH . E 5 HOH A 49 949 763 HOH HOH . E 5 HOH A 50 950 824 HOH HOH . E 5 HOH A 51 951 751 HOH HOH . E 5 HOH A 52 952 796 HOH HOH . E 5 HOH A 53 953 830 HOH HOH . E 5 HOH A 54 954 736 HOH HOH . E 5 HOH A 55 955 772 HOH HOH . E 5 HOH A 56 956 784 HOH HOH . E 5 HOH A 57 957 857 HOH HOH . E 5 HOH A 58 958 773 HOH HOH . E 5 HOH A 59 959 807 HOH HOH . E 5 HOH A 60 960 748 HOH HOH . E 5 HOH A 61 961 729 HOH HOH . E 5 HOH A 62 962 858 HOH HOH . E 5 HOH A 63 963 725 HOH HOH . E 5 HOH A 64 964 780 HOH HOH . E 5 HOH A 65 965 844 HOH HOH . E 5 HOH A 66 966 750 HOH HOH . E 5 HOH A 67 967 738 HOH HOH . E 5 HOH A 68 968 842 HOH HOH . E 5 HOH A 69 969 822 HOH HOH . E 5 HOH A 70 970 761 HOH HOH . E 5 HOH A 71 971 847 HOH HOH . E 5 HOH A 72 972 728 HOH HOH . E 5 HOH A 73 973 825 HOH HOH . E 5 HOH A 74 974 766 HOH HOH . E 5 HOH A 75 975 764 HOH HOH . E 5 HOH A 76 976 797 HOH HOH . E 5 HOH A 77 977 834 HOH HOH . E 5 HOH A 78 978 817 HOH HOH . E 5 HOH A 79 979 768 HOH HOH . E 5 HOH A 80 980 798 HOH HOH . E 5 HOH A 81 981 808 HOH HOH . E 5 HOH A 82 982 805 HOH HOH . E 5 HOH A 83 983 854 HOH HOH . E 5 HOH A 84 984 782 HOH HOH . E 5 HOH A 85 985 799 HOH HOH . E 5 HOH A 86 986 813 HOH HOH . E 5 HOH A 87 987 781 HOH HOH . E 5 HOH A 88 988 776 HOH HOH . E 5 HOH A 89 989 829 HOH HOH . E 5 HOH A 90 990 827 HOH HOH . E 5 HOH A 91 991 792 HOH HOH . E 5 HOH A 92 992 846 HOH HOH . E 5 HOH A 93 993 786 HOH HOH . E 5 HOH A 94 994 765 HOH HOH . E 5 HOH A 95 995 762 HOH HOH . E 5 HOH A 96 996 793 HOH HOH . E 5 HOH A 97 997 747 HOH HOH . E 5 HOH A 98 998 759 HOH HOH . E 5 HOH A 99 999 803 HOH HOH . E 5 HOH A 100 1000 730 HOH HOH . E 5 HOH A 101 1001 839 HOH HOH . E 5 HOH A 102 1002 732 HOH HOH . E 5 HOH A 103 1003 774 HOH HOH . E 5 HOH A 104 1004 818 HOH HOH . E 5 HOH A 105 1005 754 HOH HOH . E 5 HOH A 106 1006 775 HOH HOH . E 5 HOH A 107 1007 757 HOH HOH . E 5 HOH A 108 1008 733 HOH HOH . E 5 HOH A 109 1009 758 HOH HOH . E 5 HOH A 110 1010 719 HOH HOH . E 5 HOH A 111 1011 723 HOH HOH . E 5 HOH A 112 1012 778 HOH HOH . E 5 HOH A 113 1013 837 HOH HOH . E 5 HOH A 114 1014 745 HOH HOH . E 5 HOH A 115 1015 843 HOH HOH . E 5 HOH A 116 1016 810 HOH HOH . E 5 HOH A 117 1017 815 HOH HOH . E 5 HOH A 118 1018 814 HOH HOH . E 5 HOH A 119 1019 859 HOH HOH . E 5 HOH A 120 1020 811 HOH HOH . E 5 HOH A 121 1021 795 HOH HOH . E 5 HOH A 122 1022 783 HOH HOH . E 5 HOH A 123 1023 739 HOH HOH . E 5 HOH A 124 1024 760 HOH HOH . E 5 HOH A 125 1025 832 HOH HOH . E 5 HOH A 126 1026 727 HOH HOH . E 5 HOH A 127 1027 850 HOH HOH . E 5 HOH A 128 1028 722 HOH HOH . E 5 HOH A 129 1029 845 HOH HOH . E 5 HOH A 130 1030 851 HOH HOH . E 5 HOH A 131 1031 789 HOH HOH . E 5 HOH A 132 1032 744 HOH HOH . E 5 HOH A 133 1033 828 HOH HOH . E 5 HOH A 134 1034 823 HOH HOH . E 5 HOH A 135 1035 849 HOH HOH . E 5 HOH A 136 1036 794 HOH HOH . E 5 HOH A 137 1037 769 HOH HOH . E 5 HOH A 138 1038 855 HOH HOH . E 5 HOH A 139 1039 820 HOH HOH . E 5 HOH A 140 1040 853 HOH HOH . E 5 HOH A 141 1041 819 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH OAN . . . B 2 33.797 6.752 14.037 1 58.72 ? CAH OAN 801 A 1 HETATM 2 C CAG OAN . . . B 2 32.754 6.427 13.003 1 54.01 ? CAG OAN 801 A 1 HETATM 3 O OAN OAN . . . B 2 32.235 5.322 12.898 1 42.92 ? OAN OAN 801 A 1 HETATM 4 N NAI OAN . . . B 2 32.402 7.488 12.159 1 36.32 ? NAI OAN 801 A 1 HETATM 5 C CAB OAN . . . B 2 31.39 7.274 11.13 1 37.33 ? CAB OAN 801 A 1 HETATM 6 C CAC OAN . . . B 2 30.02 6.959 11.768 1 39.2 ? CAC OAN 801 A 1 HETATM 7 O OAJ OAN . . . B 2 29.383 8.191 11.856 1 33.22 ? OAJ OAN 801 A 1 HETATM 8 C CAD OAN . . . B 2 29.26 5.989 10.825 1 26.17 ? CAD OAN 801 A 1 HETATM 9 O OAK OAN . . . B 2 27.981 5.862 11.364 1 32.37 ? OAK OAN 801 A 1 HETATM 10 C CAE OAN . . . B 2 30.012 4.631 10.88 1 38.46 ? CAE OAN 801 A 1 HETATM 11 C CAF OAN . . . B 2 29.352 3.656 9.882 1 42.69 ? CAF OAN 801 A 1 HETATM 12 O OAM OAN . . . B 2 29.531 4.173 8.601 1 51.82 ? OAM OAN 801 A 1 HETATM 13 O OAL OAN . . . B 2 31.343 4.824 10.46 1 45.58 ? OAL OAN 801 A 1 HETATM 14 C CAA OAN . . . B 2 31.743 6.108 10.226 1 41.24 ? CAA OAN 801 A 1 HETATM 15 N NAY OAN . . . B 2 32.661 6.355 9.337 1 61.43 ? NAY OAN 801 A 1 HETATM 16 O OAQ OAN . . . B 2 33.077 5.3 8.662 1 77.86 ? OAQ OAN 801 A 1 HETATM 17 C CAP OAN . . . B 2 33.295 5.682 7.367 1 84.61 ? CAP OAN 801 A 1 HETATM 18 O OAR OAN . . . B 2 32.555 5.311 6.448 1 83.24 ? OAR OAN 801 A 1 HETATM 19 N NAO OAN . . . B 2 34.405 6.489 7.291 1 90.69 ? NAO OAN 801 A 1 HETATM 20 C CAS OAN . . . B 2 34.703 7.076 6.051 1 87.61 ? CAS OAN 801 A 1 HETATM 21 C CAT OAN . . . B 2 34.513 6.329 4.876 1 88.84 ? CAT OAN 801 A 1 HETATM 22 C CAU OAN . . . B 2 34.828 6.919 3.67 1 88.51 ? CAU OAN 801 A 1 HETATM 23 C CAV OAN . . . B 2 35.331 8.215 3.636 1 95.27 ? CAV OAN 801 A 1 HETATM 24 C CAW OAN . . . B 2 35.526 8.926 4.811 1 101.37 ? CAW OAN 801 A 1 HETATM 25 C CAX OAN . . . B 2 35.211 8.364 6.035 1 91.55 ? CAX OAN 801 A 1 HETATM 26 H HAH1 OAN . . . B 2 33.647 6.237 14.846 1 70.46 ? HAH1 OAN 801 A 1 HETATM 27 H HAH2 OAN . . . B 2 33.842 7.688 14.286 1 70.46 ? HAH2 OAN 801 A 1 HETATM 28 H HAH3 OAN . . . B 2 34.667 6.504 13.689 1 70.46 ? HAH3 OAN 801 A 1 HETATM 29 H HAI OAN . . . B 2 32.761 8.265 12.234 1 43.58 ? HAI OAN 801 A 1 HETATM 30 H HAB OAN . . . B 2 31.349 8.048 10.547 1 44.8 ? HAB OAN 801 A 1 HETATM 31 H HAC OAN . . . B 2 30.173 6.545 12.632 1 47.04 ? HAC OAN 801 A 1 HETATM 32 H HAJ OAN . . . B 2 29.096 8.274 12.652 1 39.86 ? HAJ OAN 801 A 1 HETATM 33 H HAD OAN . . . B 2 29.27 6.349 9.924 1 31.4 ? HAD OAN 801 A 1 HETATM 34 H HAK OAN . . . B 2 27.425 6.041 10.747 1 38.84 ? HAK OAN 801 A 1 HETATM 35 H HAE OAN . . . B 2 29.988 4.274 11.781 1 46.15 ? HAE OAN 801 A 1 HETATM 36 H HAF1 OAN . . . B 2 28.413 3.592 10.116 1 51.23 ? HAF1 OAN 801 A 1 HETATM 37 H HAF2 OAN . . . B 2 29.73 2.771 10.007 1 51.23 ? HAF2 OAN 801 A 1 HETATM 38 H HAM OAN . . . B 2 29.465 3.519 8.062 1 62.19 ? HAM OAN 801 A 1 HETATM 39 H HAO OAN . . . B 2 34.897 6.626 7.982 1 108.83 ? HAO OAN 801 A 1 HETATM 40 H HAT OAN . . . B 2 34.175 5.463 4.895 1 106.61 ? HAT OAN 801 A 1 HETATM 41 H HAU OAN . . . B 2 34.697 6.435 2.887 1 106.21 ? HAU OAN 801 A 1 HETATM 42 H HAV OAN . . . B 2 35.54 8.601 2.816 1 114.32 ? HAV OAN 801 A 1 HETATM 43 H HAW OAN . . . B 2 35.858 9.794 4.787 1 121.65 ? HAW OAN 801 A 1 HETATM 44 H HAX OAN . . . B 2 35.334 8.825 6.834 1 109.86 ? HAX OAN 801 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #