data_5MI8 # _model_server_result.job_id 6BXHawKb6wSW5ovxGOMtOw _model_server_result.datetime_utc '2024-11-26 21:39:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":409}' # _entry.id 5MI8 # _exptl.entry_id 5MI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.53 _cell.angle_beta 71.17 _cell.angle_gamma 87.76 _cell.entry_id 5MI8 _cell.length_a 55.87 _cell.length_b 61.51 _cell.length_c 65.04 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,R 1 1 B,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 230 A CYS 222 1_555 B SG CYS 230 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A OG1 THR 34 A THR 26 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 A OD1 ASP 363 A ASP 355 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 B OG1 THR 34 B THR 26 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc4 C MG MG . A MG 401 1_555 E O3B GDP . A GDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 C MG MG . A MG 401 1_555 R O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 C MG MG . A MG 401 1_555 R O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 C MG MG . A MG 401 1_555 R O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc8 C MG MG . A MG 401 1_555 R O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc9 D MG MG . A MG 402 1_555 R O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc10 D MG MG . A MG 402 1_555 R O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc11 D MG MG . A MG 402 1_555 R O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 L MG MG . B MG 401 1_555 N O1B GDP . B GDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc13 L MG MG . B MG 401 1_555 S O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc14 L MG MG . B MG 401 1_555 S O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc15 L MG MG . B MG 401 1_555 S O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc16 L MG MG . B MG 401 1_555 S O HOH . B HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc17 M MG MG . B MG 402 1_555 S O HOH . B HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc18 M MG MG . B MG 402 1_555 S O HOH . B HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc19 B OE2 GLU 294 B GLU 286 1_555 D MG MG . A MG 402 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc20 M MG MG . B MG 402 1_555 R O HOH . A HOH 524 1_446 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc21 M MG MG . B MG 402 1_555 R O HOH . A HOH 518 1_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc22 M MG MG . B MG 402 1_555 R O HOH . A HOH 522 1_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc23 M MG MG . B MG 402 1_555 R O HOH . A HOH 569 1_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MI8 _atom_sites.fract_transf_matrix[1][1] 0.017899 _atom_sites.fract_transf_matrix[1][2] -0.0007 _atom_sites.fract_transf_matrix[1][3] -0.006208 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01627 _atom_sites.fract_transf_matrix[2][3] -0.005527 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 1 MG MG . D 2 MG A 1 402 3 MG MG . E 3 GDP A 1 403 1 GDP GDP . F 4 ACT A 1 404 1 ACT ACT . G 4 ACT A 1 405 2 ACT ACT . H 4 ACT A 1 406 4 ACT ACT . I 5 EPE A 1 407 1 EPE EPE . J 6 BME A 1 408 1 BME BME . K 6 BME A 1 409 2 BME BME . L 2 MG B 1 401 2 MG MG . M 2 MG B 1 402 4 MG MG . N 3 GDP B 1 403 2 GDP GDP . O 4 ACT B 1 404 3 ACT ACT . P 5 EPE B 1 405 2 EPE EPE . Q 7 CL B 1 406 1 CL CL . R 8 HOH A 1 501 205 HOH HOH . R 8 HOH A 2 502 264 HOH HOH . R 8 HOH A 3 503 186 HOH HOH . R 8 HOH A 4 504 255 HOH HOH . R 8 HOH A 5 505 93 HOH HOH . R 8 HOH A 6 506 111 HOH HOH . R 8 HOH A 7 507 275 HOH HOH . R 8 HOH A 8 508 237 HOH HOH . R 8 HOH A 9 509 22 HOH HOH . R 8 HOH A 10 510 157 HOH HOH . R 8 HOH A 11 511 129 HOH HOH . R 8 HOH A 12 512 148 HOH HOH . R 8 HOH A 13 513 277 HOH HOH . R 8 HOH A 14 514 153 HOH HOH . R 8 HOH A 15 515 167 HOH HOH . R 8 HOH A 16 516 209 HOH HOH . R 8 HOH A 17 517 163 HOH HOH . R 8 HOH A 18 518 175 HOH HOH . R 8 HOH A 19 519 43 HOH HOH . R 8 HOH A 20 520 244 HOH HOH . R 8 HOH A 21 521 155 HOH HOH . R 8 HOH A 22 522 174 HOH HOH . R 8 HOH A 23 523 158 HOH HOH . R 8 HOH A 24 524 171 HOH HOH . R 8 HOH A 25 525 127 HOH HOH . R 8 HOH A 26 526 123 HOH HOH . R 8 HOH A 27 527 130 HOH HOH . R 8 HOH A 28 528 276 HOH HOH . R 8 HOH A 29 529 181 HOH HOH . R 8 HOH A 30 530 185 HOH HOH . R 8 HOH A 31 531 45 HOH HOH . R 8 HOH A 32 532 23 HOH HOH . R 8 HOH A 33 533 121 HOH HOH . R 8 HOH A 34 534 242 HOH HOH . R 8 HOH A 35 535 274 HOH HOH . R 8 HOH A 36 536 199 HOH HOH . R 8 HOH A 37 537 200 HOH HOH . R 8 HOH A 38 538 267 HOH HOH . R 8 HOH A 39 539 169 HOH HOH . R 8 HOH A 40 540 156 HOH HOH . R 8 HOH A 41 541 228 HOH HOH . R 8 HOH A 42 542 268 HOH HOH . R 8 HOH A 43 543 236 HOH HOH . R 8 HOH A 44 544 176 HOH HOH . R 8 HOH A 45 545 34 HOH HOH . R 8 HOH A 46 546 183 HOH HOH . R 8 HOH A 47 547 269 HOH HOH . R 8 HOH A 48 548 86 HOH HOH . R 8 HOH A 49 549 52 HOH HOH . R 8 HOH A 50 550 202 HOH HOH . R 8 HOH A 51 551 240 HOH HOH . R 8 HOH A 52 552 110 HOH HOH . R 8 HOH A 53 553 160 HOH HOH . R 8 HOH A 54 554 152 HOH HOH . R 8 HOH A 55 555 182 HOH HOH . R 8 HOH A 56 556 17 HOH HOH . R 8 HOH A 57 557 8 HOH HOH . R 8 HOH A 58 558 192 HOH HOH . R 8 HOH A 59 559 232 HOH HOH . R 8 HOH A 60 560 203 HOH HOH . R 8 HOH A 61 561 109 HOH HOH . R 8 HOH A 62 562 194 HOH HOH . R 8 HOH A 63 563 193 HOH HOH . R 8 HOH A 64 564 75 HOH HOH . R 8 HOH A 65 565 92 HOH HOH . R 8 HOH A 66 566 54 HOH HOH . R 8 HOH A 67 567 178 HOH HOH . R 8 HOH A 68 568 133 HOH HOH . R 8 HOH A 69 569 172 HOH HOH . R 8 HOH A 70 570 204 HOH HOH . R 8 HOH A 71 571 145 HOH HOH . R 8 HOH A 72 572 166 HOH HOH . R 8 HOH A 73 573 132 HOH HOH . R 8 HOH A 74 574 248 HOH HOH . R 8 HOH A 75 575 256 HOH HOH . R 8 HOH A 76 576 128 HOH HOH . R 8 HOH A 77 577 162 HOH HOH . R 8 HOH A 78 578 246 HOH HOH . R 8 HOH A 79 579 207 HOH HOH . R 8 HOH A 80 580 197 HOH HOH . R 8 HOH A 81 581 195 HOH HOH . R 8 HOH A 82 582 191 HOH HOH . R 8 HOH A 83 583 146 HOH HOH . R 8 HOH A 84 584 208 HOH HOH . R 8 HOH A 85 585 201 HOH HOH . R 8 HOH A 86 586 249 HOH HOH . R 8 HOH A 87 587 198 HOH HOH . R 8 HOH A 88 588 103 HOH HOH . R 8 HOH A 89 589 241 HOH HOH . R 8 HOH A 90 590 164 HOH HOH . R 8 HOH A 91 591 94 HOH HOH . R 8 HOH A 92 592 234 HOH HOH . R 8 HOH A 93 593 245 HOH HOH . R 8 HOH A 94 594 270 HOH HOH . R 8 HOH A 95 595 9 HOH HOH . R 8 HOH A 96 596 180 HOH HOH . R 8 HOH A 97 597 154 HOH HOH . R 8 HOH A 98 598 90 HOH HOH . R 8 HOH A 99 599 60 HOH HOH . R 8 HOH A 100 600 238 HOH HOH . R 8 HOH A 101 601 179 HOH HOH . R 8 HOH A 102 602 100 HOH HOH . R 8 HOH A 103 603 38 HOH HOH . R 8 HOH A 104 604 165 HOH HOH . R 8 HOH A 105 605 44 HOH HOH . R 8 HOH A 106 606 12 HOH HOH . R 8 HOH A 107 607 243 HOH HOH . R 8 HOH A 108 608 271 HOH HOH . R 8 HOH A 109 609 247 HOH HOH . R 8 HOH A 110 610 97 HOH HOH . R 8 HOH A 111 611 87 HOH HOH . R 8 HOH A 112 612 89 HOH HOH . R 8 HOH A 113 613 250 HOH HOH . S 8 HOH B 1 501 101 HOH HOH . S 8 HOH B 2 502 280 HOH HOH . S 8 HOH B 3 503 279 HOH HOH . S 8 HOH B 4 504 68 HOH HOH . S 8 HOH B 5 505 230 HOH HOH . S 8 HOH B 6 506 281 HOH HOH . S 8 HOH B 7 507 138 HOH HOH . S 8 HOH B 8 508 24 HOH HOH . S 8 HOH B 9 509 254 HOH HOH . S 8 HOH B 10 510 213 HOH HOH . S 8 HOH B 11 511 135 HOH HOH . S 8 HOH B 12 512 57 HOH HOH . S 8 HOH B 13 513 266 HOH HOH . S 8 HOH B 14 514 134 HOH HOH . S 8 HOH B 15 515 126 HOH HOH . S 8 HOH B 16 516 273 HOH HOH . S 8 HOH B 17 517 13 HOH HOH . S 8 HOH B 18 518 144 HOH HOH . S 8 HOH B 19 519 170 HOH HOH . S 8 HOH B 20 520 239 HOH HOH . S 8 HOH B 21 521 173 HOH HOH . S 8 HOH B 22 522 139 HOH HOH . S 8 HOH B 23 523 257 HOH HOH . S 8 HOH B 24 524 259 HOH HOH . S 8 HOH B 25 525 261 HOH HOH . S 8 HOH B 26 526 143 HOH HOH . S 8 HOH B 27 527 263 HOH HOH . S 8 HOH B 28 528 214 HOH HOH . S 8 HOH B 29 529 253 HOH HOH . S 8 HOH B 30 530 151 HOH HOH . S 8 HOH B 31 531 210 HOH HOH . S 8 HOH B 32 532 141 HOH HOH . S 8 HOH B 33 533 233 HOH HOH . S 8 HOH B 34 534 235 HOH HOH . S 8 HOH B 35 535 211 HOH HOH . S 8 HOH B 36 536 272 HOH HOH . S 8 HOH B 37 537 251 HOH HOH . S 8 HOH B 38 538 125 HOH HOH . S 8 HOH B 39 539 278 HOH HOH . S 8 HOH B 40 540 220 HOH HOH . S 8 HOH B 41 541 140 HOH HOH . S 8 HOH B 42 542 147 HOH HOH . S 8 HOH B 43 543 56 HOH HOH . S 8 HOH B 44 544 216 HOH HOH . S 8 HOH B 45 545 83 HOH HOH . S 8 HOH B 46 546 41 HOH HOH . S 8 HOH B 47 547 217 HOH HOH . S 8 HOH B 48 548 161 HOH HOH . S 8 HOH B 49 549 190 HOH HOH . S 8 HOH B 50 550 206 HOH HOH . S 8 HOH B 51 551 262 HOH HOH . S 8 HOH B 52 552 40 HOH HOH . S 8 HOH B 53 553 136 HOH HOH . S 8 HOH B 54 554 227 HOH HOH . S 8 HOH B 55 555 252 HOH HOH . S 8 HOH B 56 556 196 HOH HOH . S 8 HOH B 57 557 81 HOH HOH . S 8 HOH B 58 558 224 HOH HOH . S 8 HOH B 59 559 260 HOH HOH . S 8 HOH B 60 560 53 HOH HOH . S 8 HOH B 61 561 222 HOH HOH . S 8 HOH B 62 562 218 HOH HOH . S 8 HOH B 63 563 25 HOH HOH . S 8 HOH B 64 564 229 HOH HOH . S 8 HOH B 65 565 215 HOH HOH . S 8 HOH B 66 566 231 HOH HOH . S 8 HOH B 67 567 189 HOH HOH . S 8 HOH B 68 568 258 HOH HOH . S 8 HOH B 69 569 117 HOH HOH . S 8 HOH B 70 570 188 HOH HOH . S 8 HOH B 71 571 187 HOH HOH . S 8 HOH B 72 572 131 HOH HOH . S 8 HOH B 73 573 184 HOH HOH . S 8 HOH B 74 574 223 HOH HOH . S 8 HOH B 75 575 177 HOH HOH . S 8 HOH B 76 576 225 HOH HOH . S 8 HOH B 77 577 69 HOH HOH . S 8 HOH B 78 578 212 HOH HOH . S 8 HOH B 79 579 124 HOH HOH . S 8 HOH B 80 580 142 HOH HOH . S 8 HOH B 81 581 159 HOH HOH . S 8 HOH B 82 582 265 HOH HOH . S 8 HOH B 83 583 219 HOH HOH . S 8 HOH B 84 584 221 HOH HOH . S 8 HOH B 85 585 112 HOH HOH . S 8 HOH B 86 586 150 HOH HOH . S 8 HOH B 87 587 226 HOH HOH . S 8 HOH B 88 588 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . K 6 58.331 6.472 -13.805 1 96.16 ? C1 BME 409 A 1 HETATM 2 C C2 BME . . . K 6 56.849 6.708 -13.447 1 96.29 ? C2 BME 409 A 1 HETATM 3 O O1 BME . . . K 6 58.648 7.384 -14.857 1 95.5 ? O1 BME 409 A 1 HETATM 4 S S2 BME . . . K 6 55.845 5.477 -14.321 1 97.89 ? S2 BME 409 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #