data_5MIL # _model_server_result.job_id Z1L1XROoOuyAA-Z4ewiqyQ _model_server_result.datetime_utc '2024-12-25 16:24:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5MIL # _exptl.entry_id 5MIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.68 _cell.angle_gamma 90 _cell.entry_id 5MIL _cell.length_a 33.47 _cell.length_b 88.84 _cell.length_c 54.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 73 A GLU 39 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A OE2 GLU 73 A GLU 39 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A OE1 GLU 76 A GLU 42 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc4 A OE2 GLU 76 A GLU 42 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 A OE1 GLU 101 A GLU 67 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc6 A OD2 ASP 104 A ASP 70 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc7 C O1B DUP . A DUP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 C O1A DUP . A DUP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc9 C O1B DUP . A DUP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc10 C O1G DUP . A DUP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc11 D MG MG . A MG 202 1_555 I O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc12 E MG MG . A MG 203 1_555 J O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc13 I O HOH . A HOH 306 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc14 B OE1 GLU 73 B GLU 39 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 B OE2 GLU 73 B GLU 39 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc16 B OE1 GLU 76 B GLU 42 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc17 B OE2 GLU 76 B GLU 42 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc18 B OE1 GLU 101 B GLU 67 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc19 B OD2 ASP 104 B ASP 70 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc20 F O2B DUP . B DUP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc21 F O2A DUP . B DUP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc22 F O2B DUP . B DUP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc23 F O2G DUP . B DUP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc24 G MG MG . B MG 202 1_555 J O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MIL _atom_sites.fract_transf_matrix[1][1] 0.029878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000876 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DUP A 1 201 1265 DUP DUP . D 3 MG A 1 202 1 MG MG . E 3 MG A 1 203 3 MG MG . F 2 DUP B 1 201 1265 DUP DUP . G 3 MG B 1 202 2 MG MG . H 3 MG B 1 203 4 MG MG . I 4 HOH A 1 301 66 HOH HOH . I 4 HOH A 2 302 91 HOH HOH . I 4 HOH A 3 303 99 HOH HOH . I 4 HOH A 4 304 83 HOH HOH . I 4 HOH A 5 305 86 HOH HOH . I 4 HOH A 6 306 18 HOH HOH . I 4 HOH A 7 307 3 HOH HOH . I 4 HOH A 8 308 33 HOH HOH . I 4 HOH A 9 309 37 HOH HOH . I 4 HOH A 10 310 23 HOH HOH . I 4 HOH A 11 311 12 HOH HOH . I 4 HOH A 12 312 26 HOH HOH . I 4 HOH A 13 313 80 HOH HOH . I 4 HOH A 14 314 88 HOH HOH . I 4 HOH A 15 315 77 HOH HOH . I 4 HOH A 16 316 4 HOH HOH . I 4 HOH A 17 317 11 HOH HOH . I 4 HOH A 18 318 74 HOH HOH . I 4 HOH A 19 319 75 HOH HOH . I 4 HOH A 20 320 79 HOH HOH . I 4 HOH A 21 321 100 HOH HOH . I 4 HOH A 22 322 50 HOH HOH . I 4 HOH A 23 323 9 HOH HOH . I 4 HOH A 24 324 22 HOH HOH . I 4 HOH A 25 325 58 HOH HOH . I 4 HOH A 26 326 93 HOH HOH . I 4 HOH A 27 327 63 HOH HOH . I 4 HOH A 28 328 14 HOH HOH . I 4 HOH A 29 329 64 HOH HOH . I 4 HOH A 30 330 72 HOH HOH . I 4 HOH A 31 331 31 HOH HOH . I 4 HOH A 32 332 29 HOH HOH . I 4 HOH A 33 333 19 HOH HOH . I 4 HOH A 34 334 95 HOH HOH . I 4 HOH A 35 335 40 HOH HOH . I 4 HOH A 36 336 82 HOH HOH . I 4 HOH A 37 337 89 HOH HOH . I 4 HOH A 38 338 96 HOH HOH . I 4 HOH A 39 339 98 HOH HOH . I 4 HOH A 40 340 97 HOH HOH . J 4 HOH B 1 301 68 HOH HOH . J 4 HOH B 2 302 1 HOH HOH . J 4 HOH B 3 303 48 HOH HOH . J 4 HOH B 4 304 2 HOH HOH . J 4 HOH B 5 305 45 HOH HOH . J 4 HOH B 6 306 94 HOH HOH . J 4 HOH B 7 307 27 HOH HOH . J 4 HOH B 8 308 54 HOH HOH . J 4 HOH B 9 309 10 HOH HOH . J 4 HOH B 10 310 56 HOH HOH . J 4 HOH B 11 311 8 HOH HOH . J 4 HOH B 12 312 17 HOH HOH . J 4 HOH B 13 313 30 HOH HOH . J 4 HOH B 14 314 65 HOH HOH . J 4 HOH B 15 315 92 HOH HOH . J 4 HOH B 16 316 44 HOH HOH . J 4 HOH B 17 317 60 HOH HOH . J 4 HOH B 18 318 67 HOH HOH . J 4 HOH B 19 319 46 HOH HOH . J 4 HOH B 20 320 43 HOH HOH . J 4 HOH B 21 321 7 HOH HOH . J 4 HOH B 22 322 69 HOH HOH . J 4 HOH B 23 323 70 HOH HOH . J 4 HOH B 24 324 32 HOH HOH . J 4 HOH B 25 325 15 HOH HOH . J 4 HOH B 26 326 85 HOH HOH . J 4 HOH B 27 327 6 HOH HOH . J 4 HOH B 28 328 76 HOH HOH . J 4 HOH B 29 329 28 HOH HOH . J 4 HOH B 30 330 47 HOH HOH . J 4 HOH B 31 331 5 HOH HOH . J 4 HOH B 32 332 71 HOH HOH . J 4 HOH B 33 333 20 HOH HOH . J 4 HOH B 34 334 41 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 18.88 _atom_site.Cartn_y 26.367 _atom_site.Cartn_z 44.961 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #