data_5MIO # _model_server_result.job_id W-FJfW4bZi0W7RZfddbZJw _model_server_result.datetime_utc '2024-11-22 21:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 5MIO # _exptl.entry_id 5MIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.437 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MIO _cell.length_a 51.81 _cell.length_b 229.76 _cell.length_c 293.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,F,G 2 1 C,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 74 C CYS 287 1_555 C SG CYS 74 C CYS 287 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 D O1B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 C OG1 THR 142 C THR 355 1_555 H MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc4 C OG SER 255 C SER 468 1_555 H MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc5 C OD1 ASP 279 C ASP 492 1_555 H MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc6 H MG MG . C MG 801 1_555 I O1B ANP . C ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C22 H25 N O6' _chem_comp.formula_weight 399.437 _chem_comp.id LOC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms COLCHICINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 LOC doub 337 n n C12 C13 LOC sing 338 n n C12 N1 LOC sing 339 n n N1 C11 LOC sing 340 n n C11 C14 LOC sing 341 n n C11 C10 LOC sing 342 n n C14 C15 LOC doub 343 n n C14 C21 LOC sing 344 n n C15 C16 LOC sing 345 n n C10 C9 LOC sing 346 n n C9 C8 LOC sing 347 n n C8 C7 LOC doub 348 n y C8 C22 LOC sing 349 n y C7 C5 LOC sing 350 n y C5 C3 LOC doub 351 n y C5 O3 LOC sing 352 n n C3 C1 LOC sing 353 n y C3 O2 LOC sing 354 n n C1 O1 LOC sing 355 n n C1 C22 LOC doub 356 n y O1 C2 LOC sing 357 n n O2 C4 LOC sing 358 n n O3 C6 LOC sing 359 n n C22 C21 LOC sing 360 n n C21 C20 LOC doub 361 n n C20 C19 LOC sing 362 n n C19 C17 LOC doub 363 n n C17 C16 LOC sing 364 n n C17 O6 LOC sing 365 n n C16 O5 LOC doub 366 n n O6 C18 LOC sing 367 n n C13 H13 LOC sing 368 n n C13 H13A LOC sing 369 n n C13 H13B LOC sing 370 n n N1 HN1 LOC sing 371 n n C11 H11 LOC sing 372 n n C15 H15 LOC sing 373 n n C10 H10 LOC sing 374 n n C10 H10A LOC sing 375 n n C9 H9 LOC sing 376 n n C9 H9A LOC sing 377 n n C7 H7 LOC sing 378 n n C2 H2 LOC sing 379 n n C2 H2A LOC sing 380 n n C2 H2B LOC sing 381 n n C4 H4 LOC sing 382 n n C4 H4A LOC sing 383 n n C4 H4B LOC sing 384 n n C6 H6 LOC sing 385 n n C6 H6A LOC sing 386 n n C6 H6B LOC sing 387 n n C20 H20 LOC sing 388 n n C19 H19 LOC sing 389 n n C18 H18 LOC sing 390 n n C18 H18A LOC sing 391 n n C18 H18B LOC sing 392 n n # _atom_sites.entry_id 5MIO _atom_sites.fract_transf_matrix[1][1] 0.019301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 501 GDP GDP . G 7 LOC B 1 502 503 LOC LOC . H 5 MG C 1 801 801 MG MG . I 8 ANP C 1 802 800 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 LOC . . . G 7 -14.015 -57.262 22.454 1 75.72 ? O4 LOC 502 B 1 HETATM 2 C C12 LOC . . . G 7 -15.007 -57.59 23.098 1 77.12 ? C12 LOC 502 B 1 HETATM 3 C C13 LOC . . . G 7 -15.099 -58.915 23.791 1 77.48 ? C13 LOC 502 B 1 HETATM 4 N N1 LOC . . . G 7 -16.063 -56.773 23.27 1 79.63 ? N1 LOC 502 B 1 HETATM 5 C C11 LOC . . . G 7 -16.075 -55.382 22.854 1 78.85 ? C11 LOC 502 B 1 HETATM 6 C C14 LOC . . . G 7 -15.156 -54.511 23.689 1 79.98 ? C14 LOC 502 B 1 HETATM 7 C C15 LOC . . . G 7 -14.959 -54.913 24.97 1 79.33 ? C15 LOC 502 B 1 HETATM 8 C C10 LOC . . . G 7 -17.514 -54.847 22.907 1 79.88 ? C10 LOC 502 B 1 HETATM 9 C C9 LOC . . . G 7 -17.598 -53.346 22.604 1 83.99 ? C9 LOC 502 B 1 HETATM 10 C C8 LOC . . . G 7 -16.651 -52.92 21.503 1 87.61 ? C8 LOC 502 B 1 HETATM 11 C C7 LOC . . . G 7 -17.17 -52.467 20.296 1 86.23 ? C7 LOC 502 B 1 HETATM 12 C C5 LOC . . . G 7 -16.345 -51.984 19.298 1 84.77 ? C5 LOC 502 B 1 HETATM 13 C C3 LOC . . . G 7 -14.942 -52.009 19.466 1 85.36 ? C3 LOC 502 B 1 HETATM 14 C C1 LOC . . . G 7 -14.386 -52.516 20.662 1 88.72 ? C1 LOC 502 B 1 HETATM 15 O O1 LOC . . . G 7 -13.002 -52.518 20.819 1 88.86 ? O1 LOC 502 B 1 HETATM 16 C C2 LOC . . . G 7 -12.263 -53.712 20.536 1 86.21 ? C2 LOC 502 B 1 HETATM 17 O O2 LOC . . . G 7 -14.106 -51.504 18.482 1 82.95 ? O2 LOC 502 B 1 HETATM 18 C C4 LOC . . . G 7 -13.601 -50.175 18.652 1 79.29 ? C4 LOC 502 B 1 HETATM 19 O O3 LOC . . . G 7 -16.815 -51.387 18.158 1 85.07 ? O3 LOC 502 B 1 HETATM 20 C C6 LOC . . . G 7 -18.231 -51.193 18.032 1 86.3 ? C6 LOC 502 B 1 HETATM 21 C C22 LOC . . . G 7 -15.244 -52.943 21.713 1 89.09 ? C22 LOC 502 B 1 HETATM 22 C C21 LOC . . . G 7 -14.708 -53.296 23.065 1 87.07 ? C21 LOC 502 B 1 HETATM 23 C C20 LOC . . . G 7 -13.849 -52.385 23.63 1 89.11 ? C20 LOC 502 B 1 HETATM 24 C C19 LOC . . . G 7 -13.193 -52.37 24.881 1 90.37 ? C19 LOC 502 B 1 HETATM 25 C C17 LOC . . . G 7 -13.295 -53.219 25.937 1 88.78 ? C17 LOC 502 B 1 HETATM 26 C C16 LOC . . . G 7 -14.176 -54.399 26.065 1 83.02 ? C16 LOC 502 B 1 HETATM 27 O O5 LOC . . . G 7 -14.314 -54.912 27.149 1 82.64 ? O5 LOC 502 B 1 HETATM 28 O O6 LOC . . . G 7 -12.491 -53.116 27.039 1 91.2 ? O6 LOC 502 B 1 HETATM 29 C C18 LOC . . . G 7 -11.603 -51.97 27.12 1 92.25 ? C18 LOC 502 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #