data_5MIV # _model_server_result.job_id 1m_XNrm7OJhGSudKb3oCFA _model_server_result.datetime_utc '2024-11-16 02:21:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5miv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 5MIV # _exptl.entry_id 5MIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MIV _cell.length_a 73.43 _cell.length_b 116.78 _cell.length_c 166.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 328 n n PA O2A NAD sing 329 n n PA O5B NAD sing 330 n n PA O3 NAD sing 331 n n O2A HOA2 NAD sing 332 n n O5B C5B NAD sing 333 n n C5B C4B NAD sing 334 n n C5B H51A NAD sing 335 n n C5B H52A NAD sing 336 n n C4B O4B NAD sing 337 n n C4B C3B NAD sing 338 n n C4B H4B NAD sing 339 n n O4B C1B NAD sing 340 n n C3B O3B NAD sing 341 n n C3B C2B NAD sing 342 n n C3B H3B NAD sing 343 n n O3B HO3A NAD sing 344 n n C2B O2B NAD sing 345 n n C2B C1B NAD sing 346 n n C2B H2B NAD sing 347 n n O2B HO2A NAD sing 348 n n C1B N9A NAD sing 349 n n C1B H1B NAD sing 350 n n N9A C8A NAD sing 351 n y N9A C4A NAD sing 352 n y C8A N7A NAD doub 353 n y C8A H8A NAD sing 354 n n N7A C5A NAD sing 355 n y C5A C6A NAD sing 356 n y C5A C4A NAD doub 357 n y C6A N6A NAD sing 358 n n C6A N1A NAD doub 359 n y N6A H61A NAD sing 360 n n N6A H62A NAD sing 361 n n N1A C2A NAD sing 362 n y C2A N3A NAD doub 363 n y C2A H2A NAD sing 364 n n N3A C4A NAD sing 365 n y O3 PN NAD sing 366 n n PN O1N NAD doub 367 n n PN O2N NAD sing 368 n n PN O5D NAD sing 369 n n O5D C5D NAD sing 370 n n C5D C4D NAD sing 371 n n C5D H51N NAD sing 372 n n C5D H52N NAD sing 373 n n C4D O4D NAD sing 374 n n C4D C3D NAD sing 375 n n C4D H4D NAD sing 376 n n O4D C1D NAD sing 377 n n C3D O3D NAD sing 378 n n C3D C2D NAD sing 379 n n C3D H3D NAD sing 380 n n O3D HO3N NAD sing 381 n n C2D O2D NAD sing 382 n n C2D C1D NAD sing 383 n n C2D H2D NAD sing 384 n n O2D HO2N NAD sing 385 n n C1D N1N NAD sing 386 n n C1D H1D NAD sing 387 n n N1N C2N NAD sing 388 n y N1N C6N NAD doub 389 n y C2N C3N NAD doub 390 n y C2N H2N NAD sing 391 n n C3N C7N NAD sing 392 n n C3N C4N NAD sing 393 n y C7N O7N NAD doub 394 n n C7N N7N NAD sing 395 n n N7N H71N NAD sing 396 n n N7N H72N NAD sing 397 n n C4N C5N NAD doub 398 n y C4N H4N NAD sing 399 n n C5N C6N NAD sing 400 n y C5N H5N NAD sing 401 n n C6N H6N NAD sing 402 n n # _atom_sites.entry_id 5MIV _atom_sites.fract_transf_matrix[1][1] 0.013618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 701 700 NAD NAD . D 3 FAD A 1 702 1611 FAD FAD . E 2 NAD C 1 701 700 NAD NAD . F 3 FAD C 1 702 1611 FAD FAD . G 4 HOH A 1 801 329 HOH HOH . G 4 HOH A 2 802 25 HOH HOH . G 4 HOH A 3 803 325 HOH HOH . G 4 HOH A 4 804 173 HOH HOH . G 4 HOH A 5 805 174 HOH HOH . G 4 HOH A 6 806 327 HOH HOH . G 4 HOH A 7 807 336 HOH HOH . G 4 HOH A 8 808 334 HOH HOH . G 4 HOH A 9 809 155 HOH HOH . G 4 HOH A 10 810 326 HOH HOH . G 4 HOH A 11 811 344 HOH HOH . G 4 HOH A 12 812 331 HOH HOH . G 4 HOH A 13 813 309 HOH HOH . G 4 HOH A 14 814 182 HOH HOH . G 4 HOH A 15 815 342 HOH HOH . G 4 HOH A 16 816 12 HOH HOH . G 4 HOH A 17 817 192 HOH HOH . G 4 HOH A 18 818 347 HOH HOH . G 4 HOH A 19 819 313 HOH HOH . G 4 HOH A 20 820 286 HOH HOH . G 4 HOH A 21 821 176 HOH HOH . G 4 HOH A 22 822 307 HOH HOH . G 4 HOH A 23 823 345 HOH HOH . G 4 HOH A 24 824 346 HOH HOH . G 4 HOH A 25 825 288 HOH HOH . G 4 HOH A 26 826 312 HOH HOH . G 4 HOH A 27 827 352 HOH HOH . G 4 HOH A 28 828 311 HOH HOH . G 4 HOH A 29 829 323 HOH HOH . G 4 HOH A 30 830 354 HOH HOH . G 4 HOH A 31 831 53 HOH HOH . G 4 HOH A 32 832 107 HOH HOH . G 4 HOH A 33 833 209 HOH HOH . G 4 HOH A 34 834 321 HOH HOH . G 4 HOH A 35 835 33 HOH HOH . G 4 HOH A 36 836 137 HOH HOH . G 4 HOH A 37 837 38 HOH HOH . G 4 HOH A 38 838 340 HOH HOH . G 4 HOH A 39 839 356 HOH HOH . G 4 HOH A 40 840 276 HOH HOH . G 4 HOH A 41 841 337 HOH HOH . G 4 HOH A 42 842 206 HOH HOH . G 4 HOH A 43 843 135 HOH HOH . G 4 HOH A 44 844 220 HOH HOH . G 4 HOH A 45 845 361 HOH HOH . G 4 HOH A 46 846 333 HOH HOH . G 4 HOH A 47 847 120 HOH HOH . G 4 HOH A 48 848 140 HOH HOH . G 4 HOH A 49 849 300 HOH HOH . G 4 HOH A 50 850 351 HOH HOH . G 4 HOH A 51 851 252 HOH HOH . G 4 HOH A 52 852 319 HOH HOH . G 4 HOH A 53 853 62 HOH HOH . G 4 HOH A 54 854 328 HOH HOH . G 4 HOH A 55 855 223 HOH HOH . G 4 HOH A 56 856 9 HOH HOH . G 4 HOH A 57 857 369 HOH HOH . G 4 HOH A 58 858 349 HOH HOH . G 4 HOH A 59 859 20 HOH HOH . G 4 HOH A 60 860 110 HOH HOH . G 4 HOH A 61 861 15 HOH HOH . G 4 HOH A 62 862 6 HOH HOH . H 4 HOH C 1 801 339 HOH HOH . H 4 HOH C 2 802 193 HOH HOH . H 4 HOH C 3 803 119 HOH HOH . H 4 HOH C 4 804 318 HOH HOH . H 4 HOH C 5 805 341 HOH HOH . H 4 HOH C 6 806 282 HOH HOH . H 4 HOH C 7 807 338 HOH HOH . H 4 HOH C 8 808 358 HOH HOH . H 4 HOH C 9 809 69 HOH HOH . H 4 HOH C 10 810 175 HOH HOH . H 4 HOH C 11 811 362 HOH HOH . H 4 HOH C 12 812 4 HOH HOH . H 4 HOH C 13 813 357 HOH HOH . H 4 HOH C 14 814 350 HOH HOH . H 4 HOH C 15 815 51 HOH HOH . H 4 HOH C 16 816 332 HOH HOH . H 4 HOH C 17 817 17 HOH HOH . H 4 HOH C 18 818 330 HOH HOH . H 4 HOH C 19 819 355 HOH HOH . H 4 HOH C 20 820 185 HOH HOH . H 4 HOH C 21 821 353 HOH HOH . H 4 HOH C 22 822 7 HOH HOH . H 4 HOH C 23 823 322 HOH HOH . H 4 HOH C 24 824 359 HOH HOH . H 4 HOH C 25 825 148 HOH HOH . H 4 HOH C 26 826 363 HOH HOH . H 4 HOH C 27 827 314 HOH HOH . H 4 HOH C 28 828 5 HOH HOH . H 4 HOH C 29 829 335 HOH HOH . H 4 HOH C 30 830 368 HOH HOH . H 4 HOH C 31 831 14 HOH HOH . H 4 HOH C 32 832 365 HOH HOH . H 4 HOH C 33 833 324 HOH HOH . H 4 HOH C 34 834 366 HOH HOH . H 4 HOH C 35 835 290 HOH HOH . H 4 HOH C 36 836 315 HOH HOH . H 4 HOH C 37 837 310 HOH HOH . H 4 HOH C 38 838 266 HOH HOH . H 4 HOH C 39 839 150 HOH HOH . H 4 HOH C 40 840 348 HOH HOH . H 4 HOH C 41 841 320 HOH HOH . H 4 HOH C 42 842 306 HOH HOH . H 4 HOH C 43 843 316 HOH HOH . H 4 HOH C 44 844 172 HOH HOH . H 4 HOH C 45 845 115 HOH HOH . H 4 HOH C 46 846 367 HOH HOH . H 4 HOH C 47 847 308 HOH HOH . H 4 HOH C 48 848 317 HOH HOH . H 4 HOH C 49 849 292 HOH HOH . H 4 HOH C 50 850 139 HOH HOH . H 4 HOH C 51 851 364 HOH HOH . H 4 HOH C 52 852 8 HOH HOH . H 4 HOH C 53 853 267 HOH HOH . H 4 HOH C 54 854 360 HOH HOH . H 4 HOH C 55 855 213 HOH HOH . H 4 HOH C 56 856 294 HOH HOH . H 4 HOH C 57 857 262 HOH HOH . H 4 HOH C 58 858 343 HOH HOH . H 4 HOH C 59 859 258 HOH HOH . H 4 HOH C 60 860 16 HOH HOH . H 4 HOH C 61 861 13 HOH HOH . H 4 HOH C 62 862 263 HOH HOH . H 4 HOH C 63 863 370 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 -21 -21.888 27.434 1 80.94 ? PA NAD 701 A 1 HETATM 2 O O1A NAD . . . C 2 -19.919 -22.361 28.398 1 72.29 ? O1A NAD 701 A 1 HETATM 3 O O2A NAD . . . C 2 -21.566 -20.471 27.401 1 64.96 ? O2A NAD 701 A 1 HETATM 4 O O5B NAD . . . C 2 -22.241 -22.899 27.503 1 83.97 ? O5B NAD 701 A 1 HETATM 5 C C5B NAD . . . C 2 -23.517 -22.504 28.023 1 97.84 ? C5B NAD 701 A 1 HETATM 6 C C4B NAD . . . C 2 -23.518 -22.443 29.546 1 107.08 ? C4B NAD 701 A 1 HETATM 7 O O4B NAD . . . C 2 -24.711 -22.998 30.105 1 105.36 ? O4B NAD 701 A 1 HETATM 8 C C3B NAD . . . C 2 -22.352 -23.22 30.143 1 120.14 ? C3B NAD 701 A 1 HETATM 9 O O3B NAD . . . C 2 -21.265 -22.348 30.473 1 137.8 ? O3B NAD 701 A 1 HETATM 10 C C2B NAD . . . C 2 -22.886 -23.897 31.374 1 116.58 ? C2B NAD 701 A 1 HETATM 11 O O2B NAD . . . C 2 -22.358 -23.303 32.557 1 116.2 ? O2B NAD 701 A 1 HETATM 12 C C1B NAD . . . C 2 -24.384 -23.675 31.334 1 119.99 ? C1B NAD 701 A 1 HETATM 13 N N9A NAD . . . C 2 -25.097 -24.97 31.536 1 135.41 ? N9A NAD 701 A 1 HETATM 14 C C8A NAD . . . C 2 -24.638 -26.072 32.195 1 135.33 ? C8A NAD 701 A 1 HETATM 15 N N7A NAD . . . C 2 -25.576 -27.058 32.2 1 134.77 ? N7A NAD 701 A 1 HETATM 16 C C5A NAD . . . C 2 -26.661 -26.586 31.548 1 132.46 ? C5A NAD 701 A 1 HETATM 17 C C6A NAD . . . C 2 -28.005 -27.097 31.182 1 123.75 ? C6A NAD 701 A 1 HETATM 18 N N6A NAD . . . C 2 -28.376 -28.348 31.536 1 123.08 ? N6A NAD 701 A 1 HETATM 19 N N1A NAD . . . C 2 -28.836 -26.278 30.485 1 125.23 ? N1A NAD 701 A 1 HETATM 20 C C2A NAD . . . C 2 -28.48 -25.026 30.118 1 129.8 ? C2A NAD 701 A 1 HETATM 21 N N3A NAD . . . C 2 -27.278 -24.497 30.418 1 138.77 ? N3A NAD 701 A 1 HETATM 22 C C4A NAD . . . C 2 -26.345 -25.211 31.116 1 140.77 ? C4A NAD 701 A 1 HETATM 23 O O3 NAD . . . C 2 -20.355 -22.254 26.022 1 78.36 ? O3 NAD 701 A 1 HETATM 24 P PN NAD . . . C 2 -20.865 -23.487 25.148 1 80.84 ? PN NAD 701 A 1 HETATM 25 O O1N NAD . . . C 2 -22.16 -23.053 24.528 1 78.81 ? O1N NAD 701 A 1 HETATM 26 O O2N NAD . . . C 2 -20.778 -24.861 25.787 1 82.1 ? O2N NAD 701 A 1 HETATM 27 O O5D NAD . . . C 2 -19.711 -23.355 24.052 1 84.26 ? O5D NAD 701 A 1 HETATM 28 C C5D NAD . . . C 2 -18.711 -24.363 23.904 1 88.54 ? C5D NAD 701 A 1 HETATM 29 C C4D NAD . . . C 2 -17.349 -23.702 24.036 1 78.08 ? C4D NAD 701 A 1 HETATM 30 O O4D NAD . . . C 2 -17.038 -22.971 22.847 1 76.06 ? O4D NAD 701 A 1 HETATM 31 C C3D NAD . . . C 2 -17.331 -22.73 25.187 1 69.75 ? C3D NAD 701 A 1 HETATM 32 O O3D NAD . . . C 2 -16.078 -22.805 25.84 1 67.19 ? O3D NAD 701 A 1 HETATM 33 C C2D NAD . . . C 2 -17.419 -21.39 24.543 1 69.44 ? C2D NAD 701 A 1 HETATM 34 O O2D NAD . . . C 2 -16.575 -20.522 25.284 1 74.89 ? O2D NAD 701 A 1 HETATM 35 C C1D NAD . . . C 2 -16.865 -21.597 23.147 1 71.83 ? C1D NAD 701 A 1 HETATM 36 N N1N NAD . . . C 2 -17.556 -20.736 22.196 1 74.38 ? N1N NAD 701 A 1 HETATM 37 C C2N NAD . . . C 2 -17.263 -19.444 22.253 1 76.33 ? C2N NAD 701 A 1 HETATM 38 C C3N NAD . . . C 2 -17.878 -18.535 21.409 1 77 ? C3N NAD 701 A 1 HETATM 39 C C7N NAD . . . C 2 -17.531 -17.091 21.469 1 77.4 ? C7N NAD 701 A 1 HETATM 40 O O7N NAD . . . C 2 -18.225 -16.276 20.891 1 84.65 ? O7N NAD 701 A 1 HETATM 41 N N7N NAD . . . C 2 -16.446 -16.738 22.13 1 72.4 ? N7N NAD 701 A 1 HETATM 42 C C4N NAD . . . C 2 -18.807 -18.975 20.494 1 76.45 ? C4N NAD 701 A 1 HETATM 43 C C5N NAD . . . C 2 -19.102 -20.32 20.453 1 77.63 ? C5N NAD 701 A 1 HETATM 44 C C6N NAD . . . C 2 -18.454 -21.198 21.317 1 77.35 ? C6N NAD 701 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 485 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #