data_5MIV # _model_server_result.job_id hbEDFWX5JO-KUaBAIhDyFA _model_server_result.datetime_utc '2024-11-16 02:38:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5miv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5MIV # _exptl.entry_id 5MIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MIV _cell.length_a 73.43 _cell.length_b 116.78 _cell.length_c 166.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5MIV _atom_sites.fract_transf_matrix[1][1] 0.013618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 701 700 NAD NAD . D 3 FAD A 1 702 1611 FAD FAD . E 2 NAD C 1 701 700 NAD NAD . F 3 FAD C 1 702 1611 FAD FAD . G 4 HOH A 1 801 329 HOH HOH . G 4 HOH A 2 802 25 HOH HOH . G 4 HOH A 3 803 325 HOH HOH . G 4 HOH A 4 804 173 HOH HOH . G 4 HOH A 5 805 174 HOH HOH . G 4 HOH A 6 806 327 HOH HOH . G 4 HOH A 7 807 336 HOH HOH . G 4 HOH A 8 808 334 HOH HOH . G 4 HOH A 9 809 155 HOH HOH . G 4 HOH A 10 810 326 HOH HOH . G 4 HOH A 11 811 344 HOH HOH . G 4 HOH A 12 812 331 HOH HOH . G 4 HOH A 13 813 309 HOH HOH . G 4 HOH A 14 814 182 HOH HOH . G 4 HOH A 15 815 342 HOH HOH . G 4 HOH A 16 816 12 HOH HOH . G 4 HOH A 17 817 192 HOH HOH . G 4 HOH A 18 818 347 HOH HOH . G 4 HOH A 19 819 313 HOH HOH . G 4 HOH A 20 820 286 HOH HOH . G 4 HOH A 21 821 176 HOH HOH . G 4 HOH A 22 822 307 HOH HOH . G 4 HOH A 23 823 345 HOH HOH . G 4 HOH A 24 824 346 HOH HOH . G 4 HOH A 25 825 288 HOH HOH . G 4 HOH A 26 826 312 HOH HOH . G 4 HOH A 27 827 352 HOH HOH . G 4 HOH A 28 828 311 HOH HOH . G 4 HOH A 29 829 323 HOH HOH . G 4 HOH A 30 830 354 HOH HOH . G 4 HOH A 31 831 53 HOH HOH . G 4 HOH A 32 832 107 HOH HOH . G 4 HOH A 33 833 209 HOH HOH . G 4 HOH A 34 834 321 HOH HOH . G 4 HOH A 35 835 33 HOH HOH . G 4 HOH A 36 836 137 HOH HOH . G 4 HOH A 37 837 38 HOH HOH . G 4 HOH A 38 838 340 HOH HOH . G 4 HOH A 39 839 356 HOH HOH . G 4 HOH A 40 840 276 HOH HOH . G 4 HOH A 41 841 337 HOH HOH . G 4 HOH A 42 842 206 HOH HOH . G 4 HOH A 43 843 135 HOH HOH . G 4 HOH A 44 844 220 HOH HOH . G 4 HOH A 45 845 361 HOH HOH . G 4 HOH A 46 846 333 HOH HOH . G 4 HOH A 47 847 120 HOH HOH . G 4 HOH A 48 848 140 HOH HOH . G 4 HOH A 49 849 300 HOH HOH . G 4 HOH A 50 850 351 HOH HOH . G 4 HOH A 51 851 252 HOH HOH . G 4 HOH A 52 852 319 HOH HOH . G 4 HOH A 53 853 62 HOH HOH . G 4 HOH A 54 854 328 HOH HOH . G 4 HOH A 55 855 223 HOH HOH . G 4 HOH A 56 856 9 HOH HOH . G 4 HOH A 57 857 369 HOH HOH . G 4 HOH A 58 858 349 HOH HOH . G 4 HOH A 59 859 20 HOH HOH . G 4 HOH A 60 860 110 HOH HOH . G 4 HOH A 61 861 15 HOH HOH . G 4 HOH A 62 862 6 HOH HOH . H 4 HOH C 1 801 339 HOH HOH . H 4 HOH C 2 802 193 HOH HOH . H 4 HOH C 3 803 119 HOH HOH . H 4 HOH C 4 804 318 HOH HOH . H 4 HOH C 5 805 341 HOH HOH . H 4 HOH C 6 806 282 HOH HOH . H 4 HOH C 7 807 338 HOH HOH . H 4 HOH C 8 808 358 HOH HOH . H 4 HOH C 9 809 69 HOH HOH . H 4 HOH C 10 810 175 HOH HOH . H 4 HOH C 11 811 362 HOH HOH . H 4 HOH C 12 812 4 HOH HOH . H 4 HOH C 13 813 357 HOH HOH . H 4 HOH C 14 814 350 HOH HOH . H 4 HOH C 15 815 51 HOH HOH . H 4 HOH C 16 816 332 HOH HOH . H 4 HOH C 17 817 17 HOH HOH . H 4 HOH C 18 818 330 HOH HOH . H 4 HOH C 19 819 355 HOH HOH . H 4 HOH C 20 820 185 HOH HOH . H 4 HOH C 21 821 353 HOH HOH . H 4 HOH C 22 822 7 HOH HOH . H 4 HOH C 23 823 322 HOH HOH . H 4 HOH C 24 824 359 HOH HOH . H 4 HOH C 25 825 148 HOH HOH . H 4 HOH C 26 826 363 HOH HOH . H 4 HOH C 27 827 314 HOH HOH . H 4 HOH C 28 828 5 HOH HOH . H 4 HOH C 29 829 335 HOH HOH . H 4 HOH C 30 830 368 HOH HOH . H 4 HOH C 31 831 14 HOH HOH . H 4 HOH C 32 832 365 HOH HOH . H 4 HOH C 33 833 324 HOH HOH . H 4 HOH C 34 834 366 HOH HOH . H 4 HOH C 35 835 290 HOH HOH . H 4 HOH C 36 836 315 HOH HOH . H 4 HOH C 37 837 310 HOH HOH . H 4 HOH C 38 838 266 HOH HOH . H 4 HOH C 39 839 150 HOH HOH . H 4 HOH C 40 840 348 HOH HOH . H 4 HOH C 41 841 320 HOH HOH . H 4 HOH C 42 842 306 HOH HOH . H 4 HOH C 43 843 316 HOH HOH . H 4 HOH C 44 844 172 HOH HOH . H 4 HOH C 45 845 115 HOH HOH . H 4 HOH C 46 846 367 HOH HOH . H 4 HOH C 47 847 308 HOH HOH . H 4 HOH C 48 848 317 HOH HOH . H 4 HOH C 49 849 292 HOH HOH . H 4 HOH C 50 850 139 HOH HOH . H 4 HOH C 51 851 364 HOH HOH . H 4 HOH C 52 852 8 HOH HOH . H 4 HOH C 53 853 267 HOH HOH . H 4 HOH C 54 854 360 HOH HOH . H 4 HOH C 55 855 213 HOH HOH . H 4 HOH C 56 856 294 HOH HOH . H 4 HOH C 57 857 262 HOH HOH . H 4 HOH C 58 858 343 HOH HOH . H 4 HOH C 59 859 258 HOH HOH . H 4 HOH C 60 860 16 HOH HOH . H 4 HOH C 61 861 13 HOH HOH . H 4 HOH C 62 862 263 HOH HOH . H 4 HOH C 63 863 370 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 3 -9.023 -27.288 21.115 1 68.89 ? PA FAD 702 A 1 HETATM 2 O O1A FAD . . . D 3 -10.121 -28.095 21.769 1 71 ? O1A FAD 702 A 1 HETATM 3 O O2A FAD . . . D 3 -9.359 -26.336 19.995 1 62.58 ? O2A FAD 702 A 1 HETATM 4 O O5B FAD . . . D 3 -7.925 -28.313 20.558 1 61.76 ? O5B FAD 702 A 1 HETATM 5 C C5B FAD . . . D 3 -7.579 -29.443 21.355 1 68.21 ? C5B FAD 702 A 1 HETATM 6 C C4B FAD . . . D 3 -7.217 -30.567 20.409 1 72.48 ? C4B FAD 702 A 1 HETATM 7 O O4B FAD . . . D 3 -6.425 -31.55 21.074 1 70.11 ? O4B FAD 702 A 1 HETATM 8 C C3B FAD . . . D 3 -8.451 -31.286 19.904 1 73.51 ? C3B FAD 702 A 1 HETATM 9 O O3B FAD . . . D 3 -8.216 -31.785 18.577 1 77.82 ? O3B FAD 702 A 1 HETATM 10 C C2B FAD . . . D 3 -8.557 -32.441 20.846 1 71.25 ? C2B FAD 702 A 1 HETATM 11 O O2B FAD . . . D 3 -9.352 -33.466 20.261 1 77.65 ? O2B FAD 702 A 1 HETATM 12 C C1B FAD . . . D 3 -7.084 -32.801 20.974 1 70.32 ? C1B FAD 702 A 1 HETATM 13 N N9A FAD . . . D 3 -6.735 -33.635 22.143 1 70.59 ? N9A FAD 702 A 1 HETATM 14 C C8A FAD . . . D 3 -7.406 -33.744 23.307 1 72.12 ? C8A FAD 702 A 1 HETATM 15 N N7A FAD . . . D 3 -6.785 -34.615 24.147 1 68.82 ? N7A FAD 702 A 1 HETATM 16 C C5A FAD . . . D 3 -5.701 -35.073 23.511 1 65.25 ? C5A FAD 702 A 1 HETATM 17 C C6A FAD . . . D 3 -4.614 -36.007 23.828 1 64.6 ? C6A FAD 702 A 1 HETATM 18 N N6A FAD . . . D 3 -4.58 -36.624 25.02 1 67.43 ? N6A FAD 702 A 1 HETATM 19 N N1A FAD . . . D 3 -3.666 -36.228 22.905 1 64.27 ? N1A FAD 702 A 1 HETATM 20 C C2A FAD . . . D 3 -3.699 -35.606 21.719 1 64.99 ? C2A FAD 702 A 1 HETATM 21 N N3A FAD . . . D 3 -4.659 -34.731 21.371 1 65.28 ? N3A FAD 702 A 1 HETATM 22 C C4A FAD . . . D 3 -5.668 -34.427 22.203 1 66.03 ? C4A FAD 702 A 1 HETATM 23 N N1 FAD . . . D 3 -14.028 -18.291 20.903 1 75.49 ? N1 FAD 702 A 1 HETATM 24 C C2 FAD . . . D 3 -14.097 -16.952 20.77 1 81.59 ? C2 FAD 702 A 1 HETATM 25 O O2 FAD . . . D 3 -13.303 -16.287 21.493 1 88.9 ? O2 FAD 702 A 1 HETATM 26 N N3 FAD . . . D 3 -14.977 -16.351 19.92 1 78.68 ? N3 FAD 702 A 1 HETATM 27 C C4 FAD . . . D 3 -15.832 -17.044 19.146 1 73.34 ? C4 FAD 702 A 1 HETATM 28 O O4 FAD . . . D 3 -16.652 -16.513 18.358 1 79.29 ? O4 FAD 702 A 1 HETATM 29 C C4X FAD . . . D 3 -15.786 -18.501 19.245 1 68.28 ? C4X FAD 702 A 1 HETATM 30 N N5 FAD . . . D 3 -16.604 -19.231 18.497 1 69.79 ? N5 FAD 702 A 1 HETATM 31 C C5X FAD . . . D 3 -16.542 -20.558 18.62 1 71.3 ? C5X FAD 702 A 1 HETATM 32 C C6 FAD . . . D 3 -17.4 -21.293 17.845 1 74.42 ? C6 FAD 702 A 1 HETATM 33 C C7 FAD . . . D 3 -17.388 -22.675 17.923 1 75.7 ? C7 FAD 702 A 1 HETATM 34 C C7M FAD . . . D 3 -18.332 -23.491 17.076 1 79.5 ? C7M FAD 702 A 1 HETATM 35 C C8 FAD . . . D 3 -16.437 -23.346 18.835 1 71.62 ? C8 FAD 702 A 1 HETATM 36 C C8M FAD . . . D 3 -16.387 -24.837 18.941 1 75.94 ? C8M FAD 702 A 1 HETATM 37 C C9 FAD . . . D 3 -15.58 -22.611 19.614 1 70.24 ? C9 FAD 702 A 1 HETATM 38 C C9A FAD . . . D 3 -15.596 -21.234 19.549 1 68.01 ? C9A FAD 702 A 1 HETATM 39 N N10 FAD . . . D 3 -14.718 -20.473 20.326 1 63.01 ? N10 FAD 702 A 1 HETATM 40 C C10 FAD . . . D 3 -14.816 -19.094 20.185 1 66.74 ? C10 FAD 702 A 1 HETATM 41 C C1' FAD . . . D 3 -13.752 -21.063 21.269 1 59.15 ? C1' FAD 702 A 1 HETATM 42 C C2' FAD . . . D 3 -12.409 -21.435 20.649 1 55.13 ? C2' FAD 702 A 1 HETATM 43 O O2' FAD . . . D 3 -12.627 -22.14 19.442 1 52.42 ? O2' FAD 702 A 1 HETATM 44 C C3' FAD . . . D 3 -11.619 -22.318 21.605 1 55.57 ? C3' FAD 702 A 1 HETATM 45 O O3' FAD . . . D 3 -11.363 -21.495 22.744 1 52.04 ? O3' FAD 702 A 1 HETATM 46 C C4' FAD . . . D 3 -10.313 -22.903 21.028 1 58 ? C4' FAD 702 A 1 HETATM 47 O O4' FAD . . . D 3 -10.569 -23.788 19.931 1 58.33 ? O4' FAD 702 A 1 HETATM 48 C C5' FAD . . . D 3 -9.547 -23.747 22.041 1 60.08 ? C5' FAD 702 A 1 HETATM 49 O O5' FAD . . . D 3 -8.284 -24.135 21.526 1 60.34 ? O5' FAD 702 A 1 HETATM 50 P P FAD . . . D 3 -7.38 -25.16 22.374 1 69.11 ? P FAD 702 A 1 HETATM 51 O O1P FAD . . . D 3 -6.076 -25.341 21.611 1 63.25 ? O1P FAD 702 A 1 HETATM 52 O O2P FAD . . . D 3 -7.301 -24.693 23.818 1 70.2 ? O2P FAD 702 A 1 HETATM 53 O O3P FAD . . . D 3 -8.284 -26.536 22.369 1 72.21 ? O3P FAD 702 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 1200 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 53 #