data_5MIY # _model_server_result.job_id YGkMI_g4XiVhmCHUuTkslA _model_server_result.datetime_utc '2024-11-04 22:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5miy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":206}' # _entry.id 5MIY # _exptl.entry_id 5MIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MIY _cell.length_a 114.16 _cell.length_b 177.01 _cell.length_c 79.45 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,Z 1 1 B,L,M,N,O,P,Q,R,AA 2 1 C,S,T,U,V,W,X,Y,BA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 X N N ? 4 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 47 A HIS 42 1_555 K NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc2 A O SER 50 A SER 45 1_555 J NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc3 J NA NA . A NA 207 1_555 Z O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc4 J NA NA . A NA 207 1_555 BA O HOH . C HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc5 K NA NA . A NA 208 1_555 C O ILE 93 C ILE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc6 K NA NA . A NA 208 1_555 BA O HOH . C HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc7 Z O HOH . A HOH 301 1_555 X NA NA . C NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc8 C O ILE 62 C ILE 57 1_555 X NA NA . C NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc9 X NA NA . C NA 206 1_555 BA O HOH . C HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc10 Y NA NA . C NA 207 1_555 BA O HOH . C HOH 367 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MIY _atom_sites.fract_transf_matrix[1][1] 0.00876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 201 201 SO4 SO4 . E 2 SO4 A 1 202 202 SO4 SO4 . F 2 SO4 A 1 203 203 SO4 SO4 . G 2 SO4 A 1 204 204 SO4 SO4 . H 3 EDO A 1 205 205 EDO EDO . I 3 EDO A 1 206 206 EDO EDO . J 4 NA A 1 207 207 NA NA . K 4 NA A 1 208 208 NA NA . L 2 SO4 B 1 201 201 SO4 SO4 . M 2 SO4 B 1 202 202 SO4 SO4 . N 2 SO4 B 1 203 203 SO4 SO4 . O 2 SO4 B 1 204 204 SO4 SO4 . P 2 SO4 B 1 205 205 SO4 SO4 . Q 3 EDO B 1 206 206 EDO EDO . R 3 EDO B 1 207 207 EDO EDO . S 2 SO4 C 1 201 201 SO4 SO4 . T 2 SO4 C 1 202 202 SO4 SO4 . U 2 SO4 C 1 203 203 SO4 SO4 . V 2 SO4 C 1 204 204 SO4 SO4 . W 3 EDO C 1 205 205 EDO EDO . X 4 NA C 1 206 206 NA NA . Y 4 NA C 1 207 207 NA NA . Z 5 HOH A 1 301 302 HOH HOH . Z 5 HOH A 2 302 301 HOH HOH . Z 5 HOH A 3 303 304 HOH HOH . Z 5 HOH A 4 304 303 HOH HOH . Z 5 HOH A 5 305 307 HOH HOH . Z 5 HOH A 6 306 315 HOH HOH . Z 5 HOH A 7 307 308 HOH HOH . Z 5 HOH A 8 308 309 HOH HOH . Z 5 HOH A 9 309 305 HOH HOH . Z 5 HOH A 10 310 311 HOH HOH . Z 5 HOH A 11 311 306 HOH HOH . Z 5 HOH A 12 312 314 HOH HOH . Z 5 HOH A 13 313 319 HOH HOH . Z 5 HOH A 14 314 310 HOH HOH . Z 5 HOH A 15 315 320 HOH HOH . Z 5 HOH A 16 316 313 HOH HOH . Z 5 HOH A 17 317 322 HOH HOH . Z 5 HOH A 18 318 331 HOH HOH . Z 5 HOH A 19 319 317 HOH HOH . Z 5 HOH A 20 320 327 HOH HOH . Z 5 HOH A 21 321 324 HOH HOH . Z 5 HOH A 22 322 325 HOH HOH . Z 5 HOH A 23 323 312 HOH HOH . Z 5 HOH A 24 324 328 HOH HOH . Z 5 HOH A 25 325 323 HOH HOH . Z 5 HOH A 26 326 326 HOH HOH . Z 5 HOH A 27 327 318 HOH HOH . Z 5 HOH A 28 328 316 HOH HOH . Z 5 HOH A 29 329 329 HOH HOH . Z 5 HOH A 30 330 321 HOH HOH . Z 5 HOH A 31 331 332 HOH HOH . Z 5 HOH A 32 332 334 HOH HOH . Z 5 HOH A 33 333 330 HOH HOH . Z 5 HOH A 34 334 336 HOH HOH . Z 5 HOH A 35 335 335 HOH HOH . Z 5 HOH A 36 336 341 HOH HOH . Z 5 HOH A 37 337 337 HOH HOH . Z 5 HOH A 38 338 340 HOH HOH . Z 5 HOH A 39 339 342 HOH HOH . Z 5 HOH A 40 340 339 HOH HOH . Z 5 HOH A 41 341 338 HOH HOH . Z 5 HOH A 42 342 357 HOH HOH . Z 5 HOH A 43 343 345 HOH HOH . Z 5 HOH A 44 344 343 HOH HOH . Z 5 HOH A 45 345 346 HOH HOH . Z 5 HOH A 46 346 368 HOH HOH . Z 5 HOH A 47 347 373 HOH HOH . Z 5 HOH A 48 348 344 HOH HOH . Z 5 HOH A 49 349 347 HOH HOH . Z 5 HOH A 50 350 348 HOH HOH . Z 5 HOH A 51 351 349 HOH HOH . Z 5 HOH A 52 352 350 HOH HOH . Z 5 HOH A 53 353 353 HOH HOH . Z 5 HOH A 54 354 351 HOH HOH . Z 5 HOH A 55 355 354 HOH HOH . Z 5 HOH A 56 356 352 HOH HOH . Z 5 HOH A 57 357 355 HOH HOH . Z 5 HOH A 58 358 356 HOH HOH . AA 5 HOH B 1 301 302 HOH HOH . AA 5 HOH B 2 302 303 HOH HOH . AA 5 HOH B 3 303 305 HOH HOH . AA 5 HOH B 4 304 304 HOH HOH . AA 5 HOH B 5 305 306 HOH HOH . AA 5 HOH B 6 306 317 HOH HOH . AA 5 HOH B 7 307 308 HOH HOH . AA 5 HOH B 8 308 316 HOH HOH . AA 5 HOH B 9 309 313 HOH HOH . AA 5 HOH B 10 310 322 HOH HOH . AA 5 HOH B 11 311 301 HOH HOH . AA 5 HOH B 12 312 310 HOH HOH . AA 5 HOH B 13 313 318 HOH HOH . AA 5 HOH B 14 314 312 HOH HOH . AA 5 HOH B 15 315 309 HOH HOH . AA 5 HOH B 16 316 338 HOH HOH . AA 5 HOH B 17 317 314 HOH HOH . AA 5 HOH B 18 318 311 HOH HOH . AA 5 HOH B 19 319 307 HOH HOH . AA 5 HOH B 20 320 329 HOH HOH . AA 5 HOH B 21 321 330 HOH HOH . AA 5 HOH B 22 322 325 HOH HOH . AA 5 HOH B 23 323 315 HOH HOH . AA 5 HOH B 24 324 320 HOH HOH . AA 5 HOH B 25 325 339 HOH HOH . AA 5 HOH B 26 326 328 HOH HOH . AA 5 HOH B 27 327 326 HOH HOH . AA 5 HOH B 28 328 334 HOH HOH . AA 5 HOH B 29 329 345 HOH HOH . AA 5 HOH B 30 330 324 HOH HOH . AA 5 HOH B 31 331 323 HOH HOH . AA 5 HOH B 32 332 321 HOH HOH . AA 5 HOH B 33 333 337 HOH HOH . AA 5 HOH B 34 334 331 HOH HOH . AA 5 HOH B 35 335 332 HOH HOH . AA 5 HOH B 36 336 319 HOH HOH . AA 5 HOH B 37 337 341 HOH HOH . AA 5 HOH B 38 338 336 HOH HOH . AA 5 HOH B 39 339 349 HOH HOH . AA 5 HOH B 40 340 342 HOH HOH . AA 5 HOH B 41 341 333 HOH HOH . AA 5 HOH B 42 342 347 HOH HOH . AA 5 HOH B 43 343 327 HOH HOH . AA 5 HOH B 44 344 348 HOH HOH . AA 5 HOH B 45 345 343 HOH HOH . AA 5 HOH B 46 346 344 HOH HOH . AA 5 HOH B 47 347 340 HOH HOH . AA 5 HOH B 48 348 346 HOH HOH . AA 5 HOH B 49 349 357 HOH HOH . AA 5 HOH B 50 350 355 HOH HOH . AA 5 HOH B 51 351 359 HOH HOH . AA 5 HOH B 52 352 368 HOH HOH . AA 5 HOH B 53 353 350 HOH HOH . AA 5 HOH B 54 354 353 HOH HOH . AA 5 HOH B 55 355 351 HOH HOH . AA 5 HOH B 56 356 361 HOH HOH . AA 5 HOH B 57 357 358 HOH HOH . AA 5 HOH B 58 358 354 HOH HOH . AA 5 HOH B 59 359 352 HOH HOH . AA 5 HOH B 60 360 365 HOH HOH . AA 5 HOH B 61 361 356 HOH HOH . AA 5 HOH B 62 362 360 HOH HOH . AA 5 HOH B 63 363 366 HOH HOH . AA 5 HOH B 64 364 364 HOH HOH . AA 5 HOH B 65 365 372 HOH HOH . AA 5 HOH B 66 366 369 HOH HOH . AA 5 HOH B 67 367 367 HOH HOH . AA 5 HOH B 68 368 362 HOH HOH . AA 5 HOH B 69 369 371 HOH HOH . AA 5 HOH B 70 370 363 HOH HOH . AA 5 HOH B 71 371 374 HOH HOH . AA 5 HOH B 72 372 335 HOH HOH . AA 5 HOH B 73 373 373 HOH HOH . AA 5 HOH B 74 374 370 HOH HOH . AA 5 HOH B 75 375 375 HOH HOH . AA 5 HOH B 76 376 378 HOH HOH . AA 5 HOH B 77 377 377 HOH HOH . AA 5 HOH B 78 378 379 HOH HOH . AA 5 HOH B 79 379 376 HOH HOH . AA 5 HOH B 80 380 382 HOH HOH . AA 5 HOH B 81 381 381 HOH HOH . AA 5 HOH B 82 382 383 HOH HOH . AA 5 HOH B 83 383 385 HOH HOH . AA 5 HOH B 84 384 384 HOH HOH . AA 5 HOH B 85 385 386 HOH HOH . AA 5 HOH B 86 386 387 HOH HOH . AA 5 HOH B 87 387 380 HOH HOH . AA 5 HOH B 88 388 388 HOH HOH . AA 5 HOH B 89 389 389 HOH HOH . AA 5 HOH B 90 390 394 HOH HOH . AA 5 HOH B 91 391 390 HOH HOH . AA 5 HOH B 92 392 392 HOH HOH . AA 5 HOH B 93 393 391 HOH HOH . AA 5 HOH B 94 394 393 HOH HOH . AA 5 HOH B 95 395 395 HOH HOH . AA 5 HOH B 96 396 396 HOH HOH . AA 5 HOH B 97 397 397 HOH HOH . BA 5 HOH C 1 301 301 HOH HOH . BA 5 HOH C 2 302 302 HOH HOH . BA 5 HOH C 3 303 304 HOH HOH . BA 5 HOH C 4 304 303 HOH HOH . BA 5 HOH C 5 305 308 HOH HOH . BA 5 HOH C 6 306 307 HOH HOH . BA 5 HOH C 7 307 306 HOH HOH . BA 5 HOH C 8 308 305 HOH HOH . BA 5 HOH C 9 309 314 HOH HOH . BA 5 HOH C 10 310 315 HOH HOH . BA 5 HOH C 11 311 309 HOH HOH . BA 5 HOH C 12 312 310 HOH HOH . BA 5 HOH C 13 313 316 HOH HOH . BA 5 HOH C 14 314 320 HOH HOH . BA 5 HOH C 15 315 319 HOH HOH . BA 5 HOH C 16 316 311 HOH HOH . BA 5 HOH C 17 317 318 HOH HOH . BA 5 HOH C 18 318 312 HOH HOH . BA 5 HOH C 19 319 325 HOH HOH . BA 5 HOH C 20 320 317 HOH HOH . BA 5 HOH C 21 321 340 HOH HOH . BA 5 HOH C 22 322 328 HOH HOH . BA 5 HOH C 23 323 323 HOH HOH . BA 5 HOH C 24 324 313 HOH HOH . BA 5 HOH C 25 325 326 HOH HOH . BA 5 HOH C 26 326 330 HOH HOH . BA 5 HOH C 27 327 324 HOH HOH . BA 5 HOH C 28 328 335 HOH HOH . BA 5 HOH C 29 329 329 HOH HOH . BA 5 HOH C 30 330 334 HOH HOH . BA 5 HOH C 31 331 321 HOH HOH . BA 5 HOH C 32 332 322 HOH HOH . BA 5 HOH C 33 333 327 HOH HOH . BA 5 HOH C 34 334 341 HOH HOH . BA 5 HOH C 35 335 336 HOH HOH . BA 5 HOH C 36 336 333 HOH HOH . BA 5 HOH C 37 337 332 HOH HOH . BA 5 HOH C 38 338 339 HOH HOH . BA 5 HOH C 39 339 344 HOH HOH . BA 5 HOH C 40 340 338 HOH HOH . BA 5 HOH C 41 341 350 HOH HOH . BA 5 HOH C 42 342 342 HOH HOH . BA 5 HOH C 43 343 343 HOH HOH . BA 5 HOH C 44 344 349 HOH HOH . BA 5 HOH C 45 345 333 HOH HOH . BA 5 HOH C 46 346 348 HOH HOH . BA 5 HOH C 47 347 346 HOH HOH . BA 5 HOH C 48 348 357 HOH HOH . BA 5 HOH C 49 349 353 HOH HOH . BA 5 HOH C 50 350 337 HOH HOH . BA 5 HOH C 51 351 365 HOH HOH . BA 5 HOH C 52 352 347 HOH HOH . BA 5 HOH C 53 353 355 HOH HOH . BA 5 HOH C 54 354 352 HOH HOH . BA 5 HOH C 55 355 351 HOH HOH . BA 5 HOH C 56 356 358 HOH HOH . BA 5 HOH C 57 357 364 HOH HOH . BA 5 HOH C 58 358 356 HOH HOH . BA 5 HOH C 59 359 345 HOH HOH . BA 5 HOH C 60 360 359 HOH HOH . BA 5 HOH C 61 361 383 HOH HOH . BA 5 HOH C 62 362 331 HOH HOH . BA 5 HOH C 63 363 360 HOH HOH . BA 5 HOH C 64 364 363 HOH HOH . BA 5 HOH C 65 365 354 HOH HOH . BA 5 HOH C 66 366 362 HOH HOH . BA 5 HOH C 67 367 361 HOH HOH . BA 5 HOH C 68 368 366 HOH HOH . BA 5 HOH C 69 369 372 HOH HOH . BA 5 HOH C 70 370 367 HOH HOH . BA 5 HOH C 71 371 369 HOH HOH . BA 5 HOH C 72 372 370 HOH HOH . BA 5 HOH C 73 373 371 HOH HOH . BA 5 HOH C 74 374 376 HOH HOH . BA 5 HOH C 75 375 374 HOH HOH . BA 5 HOH C 76 376 378 HOH HOH . BA 5 HOH C 77 377 375 HOH HOH . BA 5 HOH C 78 378 377 HOH HOH . BA 5 HOH C 79 379 379 HOH HOH . BA 5 HOH C 80 380 380 HOH HOH . BA 5 HOH C 81 381 381 HOH HOH . BA 5 HOH C 82 382 382 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 4 _atom_site.Cartn_x -13.142 _atom_site.Cartn_y -21.89 _atom_site.Cartn_z 42.151 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 206 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #