data_5MJC # _model_server_result.job_id 2M5Bqe4GQabWvYreaW7fbA _model_server_result.datetime_utc '2024-11-22 08:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5MJC # _exptl.entry_id 5MJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MJC _cell.length_a 87.351 _cell.length_b 87.351 _cell.length_c 112.65 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 143 n n CHA C4D HEM doub 144 n n CHA HHA HEM sing 145 n n CHB C4A HEM sing 146 n n CHB C1B HEM doub 147 n n CHB HHB HEM sing 148 n n CHC C4B HEM sing 149 n n CHC C1C HEM doub 150 n n CHC HHC HEM sing 151 n n CHD C4C HEM doub 152 n n CHD C1D HEM sing 153 n n CHD HHD HEM sing 154 n n C1A C2A HEM doub 155 n y C1A NA HEM sing 156 n y C2A C3A HEM sing 157 n y C2A CAA HEM sing 158 n n C3A C4A HEM doub 159 n y C3A CMA HEM sing 160 n n C4A NA HEM sing 161 n y CMA HMA HEM sing 162 n n CMA HMAA HEM sing 163 n n CMA HMAB HEM sing 164 n n CAA CBA HEM sing 165 n n CAA HAA HEM sing 166 n n CAA HAAA HEM sing 167 n n CBA CGA HEM sing 168 n n CBA HBA HEM sing 169 n n CBA HBAA HEM sing 170 n n CGA O1A HEM doub 171 n n CGA O2A HEM sing 172 n n C1B C2B HEM sing 173 n n C1B NB HEM sing 174 n n C2B C3B HEM doub 175 n n C2B CMB HEM sing 176 n n C3B C4B HEM sing 177 n n C3B CAB HEM sing 178 n n C4B NB HEM doub 179 n n CMB HMB HEM sing 180 n n CMB HMBA HEM sing 181 n n CMB HMBB HEM sing 182 n n CAB CBB HEM doub 183 n n CAB HAB HEM sing 184 n n CBB HBB HEM sing 185 n n CBB HBBA HEM sing 186 n n C1C C2C HEM sing 187 n y C1C NC HEM sing 188 n y C2C C3C HEM doub 189 n y C2C CMC HEM sing 190 n n C3C C4C HEM sing 191 n y C3C CAC HEM sing 192 n n C4C NC HEM sing 193 n y CMC HMC HEM sing 194 n n CMC HMCA HEM sing 195 n n CMC HMCB HEM sing 196 n n CAC CBC HEM doub 197 n n CAC HAC HEM sing 198 n n CBC HBC HEM sing 199 n n CBC HBCA HEM sing 200 n n C1D C2D HEM sing 201 n n C1D ND HEM doub 202 n n C2D C3D HEM doub 203 n n C2D CMD HEM sing 204 n n C3D C4D HEM sing 205 n n C3D CAD HEM sing 206 n n C4D ND HEM sing 207 n n CMD HMD HEM sing 208 n n CMD HMDA HEM sing 209 n n CMD HMDB HEM sing 210 n n CAD CBD HEM sing 211 n n CAD HAD HEM sing 212 n n CAD HADA HEM sing 213 n n CBD CGD HEM sing 214 n n CBD HBD HEM sing 215 n n CBD HBDA HEM sing 216 n n CGD O1D HEM doub 217 n n CGD O2D HEM sing 218 n n O2A H2A HEM sing 219 n n O2D H2D HEM sing 220 n n FE NA HEM sing 221 n n FE NB HEM sing 222 n n FE NC HEM sing 223 n n FE ND HEM sing 224 n n # _atom_sites.entry_id 5MJC _atom_sites.fract_transf_matrix[1][1] 0.011448 _atom_sites.fract_transf_matrix[1][2] 0.00661 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 160 HEM HEM . C 3 DIO A 1 202 161 DIO DIO . D 3 DIO A 1 203 162 DIO DIO . E 4 SO4 A 1 204 170 SO4 SO4 . F 5 OXY A 1 205 180 OXY OXY . G 6 HOH A 1 301 259 HOH HOH . G 6 HOH A 2 302 212 HOH HOH . G 6 HOH A 3 303 257 HOH HOH . G 6 HOH A 4 304 226 HOH HOH . G 6 HOH A 5 305 247 HOH HOH . G 6 HOH A 6 306 254 HOH HOH . G 6 HOH A 7 307 334 HOH HOH . G 6 HOH A 8 308 245 HOH HOH . G 6 HOH A 9 309 248 HOH HOH . G 6 HOH A 10 310 249 HOH HOH . G 6 HOH A 11 311 231 HOH HOH . G 6 HOH A 12 312 344 HOH HOH . G 6 HOH A 13 313 306 HOH HOH . G 6 HOH A 14 314 221 HOH HOH . G 6 HOH A 15 315 216 HOH HOH . G 6 HOH A 16 316 278 HOH HOH . G 6 HOH A 17 317 266 HOH HOH . G 6 HOH A 18 318 265 HOH HOH . G 6 HOH A 19 319 343 HOH HOH . G 6 HOH A 20 320 208 HOH HOH . G 6 HOH A 21 321 228 HOH HOH . G 6 HOH A 22 322 223 HOH HOH . G 6 HOH A 23 323 262 HOH HOH . G 6 HOH A 24 324 309 HOH HOH . G 6 HOH A 25 325 214 HOH HOH . G 6 HOH A 26 326 281 HOH HOH . G 6 HOH A 27 327 201 HOH HOH . G 6 HOH A 28 328 206 HOH HOH . G 6 HOH A 29 329 209 HOH HOH . G 6 HOH A 30 330 285 HOH HOH . G 6 HOH A 31 331 244 HOH HOH . G 6 HOH A 32 332 330 HOH HOH . G 6 HOH A 33 333 261 HOH HOH . G 6 HOH A 34 334 277 HOH HOH . G 6 HOH A 35 335 232 HOH HOH . G 6 HOH A 36 336 297 HOH HOH . G 6 HOH A 37 337 229 HOH HOH . G 6 HOH A 38 338 207 HOH HOH . G 6 HOH A 39 339 237 HOH HOH . G 6 HOH A 40 340 205 HOH HOH . G 6 HOH A 41 341 255 HOH HOH . G 6 HOH A 42 342 272 HOH HOH . G 6 HOH A 43 343 276 HOH HOH . G 6 HOH A 44 344 203 HOH HOH . G 6 HOH A 45 345 295 HOH HOH . G 6 HOH A 46 346 211 HOH HOH . G 6 HOH A 47 347 210 HOH HOH . G 6 HOH A 48 348 215 HOH HOH . G 6 HOH A 49 349 230 HOH HOH . G 6 HOH A 50 350 235 HOH HOH . G 6 HOH A 51 351 274 HOH HOH . G 6 HOH A 52 352 234 HOH HOH . G 6 HOH A 53 353 308 HOH HOH . G 6 HOH A 54 354 321 HOH HOH . G 6 HOH A 55 355 282 HOH HOH . G 6 HOH A 56 356 218 HOH HOH . G 6 HOH A 57 357 301 HOH HOH . G 6 HOH A 58 358 292 HOH HOH . G 6 HOH A 59 359 250 HOH HOH . G 6 HOH A 60 360 293 HOH HOH . G 6 HOH A 61 361 225 HOH HOH . G 6 HOH A 62 362 202 HOH HOH . G 6 HOH A 63 363 284 HOH HOH . G 6 HOH A 64 364 219 HOH HOH . G 6 HOH A 65 365 333 HOH HOH . G 6 HOH A 66 366 263 HOH HOH . G 6 HOH A 67 367 279 HOH HOH . G 6 HOH A 68 368 204 HOH HOH . G 6 HOH A 69 369 287 HOH HOH . G 6 HOH A 70 370 267 HOH HOH . G 6 HOH A 71 371 332 HOH HOH . G 6 HOH A 72 372 339 HOH HOH . G 6 HOH A 73 373 305 HOH HOH . G 6 HOH A 74 374 299 HOH HOH . G 6 HOH A 75 375 233 HOH HOH . G 6 HOH A 76 376 273 HOH HOH . G 6 HOH A 77 377 324 HOH HOH . G 6 HOH A 78 378 286 HOH HOH . G 6 HOH A 79 379 291 HOH HOH . G 6 HOH A 80 380 315 HOH HOH . G 6 HOH A 81 381 296 HOH HOH . G 6 HOH A 82 382 275 HOH HOH . G 6 HOH A 83 383 260 HOH HOH . G 6 HOH A 84 384 246 HOH HOH . G 6 HOH A 85 385 283 HOH HOH . G 6 HOH A 86 386 290 HOH HOH . G 6 HOH A 87 387 337 HOH HOH . G 6 HOH A 88 388 328 HOH HOH . G 6 HOH A 89 389 217 HOH HOH . G 6 HOH A 90 390 335 HOH HOH . G 6 HOH A 91 391 327 HOH HOH . G 6 HOH A 92 392 316 HOH HOH . G 6 HOH A 93 393 220 HOH HOH . G 6 HOH A 94 394 318 HOH HOH . G 6 HOH A 95 395 252 HOH HOH . G 6 HOH A 96 396 325 HOH HOH . G 6 HOH A 97 397 270 HOH HOH . G 6 HOH A 98 398 329 HOH HOH . G 6 HOH A 99 399 251 HOH HOH . G 6 HOH A 100 400 243 HOH HOH . G 6 HOH A 101 401 288 HOH HOH . G 6 HOH A 102 402 213 HOH HOH . G 6 HOH A 103 403 313 HOH HOH . G 6 HOH A 104 404 312 HOH HOH . G 6 HOH A 105 405 280 HOH HOH . G 6 HOH A 106 406 294 HOH HOH . G 6 HOH A 107 407 336 HOH HOH . G 6 HOH A 108 408 224 HOH HOH . G 6 HOH A 109 409 253 HOH HOH . G 6 HOH A 110 410 236 HOH HOH . G 6 HOH A 111 411 268 HOH HOH . G 6 HOH A 112 412 289 HOH HOH . G 6 HOH A 113 413 320 HOH HOH . G 6 HOH A 114 414 227 HOH HOH . G 6 HOH A 115 415 256 HOH HOH . G 6 HOH A 116 416 271 HOH HOH . G 6 HOH A 117 417 258 HOH HOH . G 6 HOH A 118 418 298 HOH HOH . G 6 HOH A 119 419 240 HOH HOH . G 6 HOH A 120 420 307 HOH HOH . G 6 HOH A 121 421 242 HOH HOH . G 6 HOH A 122 422 300 HOH HOH . G 6 HOH A 123 423 302 HOH HOH . G 6 HOH A 124 424 303 HOH HOH . G 6 HOH A 125 425 241 HOH HOH . G 6 HOH A 126 426 340 HOH HOH . G 6 HOH A 127 427 239 HOH HOH . G 6 HOH A 128 428 338 HOH HOH . G 6 HOH A 129 429 304 HOH HOH . G 6 HOH A 130 430 322 HOH HOH . G 6 HOH A 131 431 310 HOH HOH . G 6 HOH A 132 432 341 HOH HOH . G 6 HOH A 133 433 269 HOH HOH . G 6 HOH A 134 434 222 HOH HOH . G 6 HOH A 135 435 264 HOH HOH . G 6 HOH A 136 436 331 HOH HOH . G 6 HOH A 137 437 326 HOH HOH . G 6 HOH A 138 438 342 HOH HOH . G 6 HOH A 139 439 311 HOH HOH . G 6 HOH A 140 440 238 HOH HOH . G 6 HOH A 141 441 317 HOH HOH . G 6 HOH A 142 442 323 HOH HOH . G 6 HOH A 143 443 319 HOH HOH . G 6 HOH A 144 444 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 19.08 57.784 36.16 1 16.41 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 14.683 56.896 34.42 1 17.26 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 15.449 52.12 35.165 1 17.59 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 20.104 53.035 36.203 1 15.69 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 17.831 57.908 35.642 1 17.25 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 17.274 59.158 35.309 1 17.1 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 16.016 58.927 34.815 1 18.03 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 15.832 57.53 34.828 1 19.39 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 14.984 59.915 34.316 1 21.41 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 17.893 60.49 35.497 1 16.88 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 18.373 61.018 34.131 1 18.78 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 19.525 60.211 33.627 1 21.71 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 20.661 60.228 34.214 1 21.01 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 19.41 59.58 32.561 1 19.7 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 14.559 55.514 34.481 1 16.94 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 13.359 54.87 34.104 1 16.12 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 13.519 53.532 34.421 1 16.34 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 14.881 53.334 34.861 1 16.98 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 12.086 55.575 33.71 1 18.92 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 12.592 52.388 34.216 1 18.51 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 11.515 52.339 34.924 1 25.53 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 16.777 51.989 35.497 1 18.72 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 17.367 50.788 35.845 1 19.2 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 18.708 51.055 36.128 1 19.76 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 18.89 52.424 36.015 1 18.73 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 16.618 49.472 35.779 1 23.47 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 19.78 50.127 36.471 1 20.2 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 19.408 48.946 36.875 1 27.81 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 20.098 54.405 36.243 1 15.98 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 21.338 55.091 36.634 1 17.65 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 21.073 56.397 36.646 1 15.67 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 19.672 56.519 36.246 1 17.32 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 22.627 54.367 36.85 1 15.01 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 22.033 57.502 37.085 1 16.6 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 21.487 58.019 38.465 1 20.92 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 22.314 59.093 39.172 1 22.2 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 22.089 60.296 38.992 1 27.69 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 23.22 58.766 39.907 1 25.17 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 16.929 56.9 35.346 1 17.77 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 15.399 54.552 34.905 1 14.43 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 17.721 52.983 35.619 1 17.09 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 19.128 55.286 36.041 1 14.11 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 17.321 54.923 35.485 1 15.95 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #