data_5MJC # _model_server_result.job_id nxDixnae5ICcrVj1Vob3VA _model_server_result.datetime_utc '2024-11-22 08:49:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5MJC # _exptl.entry_id 5MJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MJC _cell.length_a 87.351 _cell.length_b 87.351 _cell.length_c 112.65 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 5MJC _atom_sites.fract_transf_matrix[1][1] 0.011448 _atom_sites.fract_transf_matrix[1][2] 0.00661 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 160 HEM HEM . C 3 DIO A 1 202 161 DIO DIO . D 3 DIO A 1 203 162 DIO DIO . E 4 SO4 A 1 204 170 SO4 SO4 . F 5 OXY A 1 205 180 OXY OXY . G 6 HOH A 1 301 259 HOH HOH . G 6 HOH A 2 302 212 HOH HOH . G 6 HOH A 3 303 257 HOH HOH . G 6 HOH A 4 304 226 HOH HOH . G 6 HOH A 5 305 247 HOH HOH . G 6 HOH A 6 306 254 HOH HOH . G 6 HOH A 7 307 334 HOH HOH . G 6 HOH A 8 308 245 HOH HOH . G 6 HOH A 9 309 248 HOH HOH . G 6 HOH A 10 310 249 HOH HOH . G 6 HOH A 11 311 231 HOH HOH . G 6 HOH A 12 312 344 HOH HOH . G 6 HOH A 13 313 306 HOH HOH . G 6 HOH A 14 314 221 HOH HOH . G 6 HOH A 15 315 216 HOH HOH . G 6 HOH A 16 316 278 HOH HOH . G 6 HOH A 17 317 266 HOH HOH . G 6 HOH A 18 318 265 HOH HOH . G 6 HOH A 19 319 343 HOH HOH . G 6 HOH A 20 320 208 HOH HOH . G 6 HOH A 21 321 228 HOH HOH . G 6 HOH A 22 322 223 HOH HOH . G 6 HOH A 23 323 262 HOH HOH . G 6 HOH A 24 324 309 HOH HOH . G 6 HOH A 25 325 214 HOH HOH . G 6 HOH A 26 326 281 HOH HOH . G 6 HOH A 27 327 201 HOH HOH . G 6 HOH A 28 328 206 HOH HOH . G 6 HOH A 29 329 209 HOH HOH . G 6 HOH A 30 330 285 HOH HOH . G 6 HOH A 31 331 244 HOH HOH . G 6 HOH A 32 332 330 HOH HOH . G 6 HOH A 33 333 261 HOH HOH . G 6 HOH A 34 334 277 HOH HOH . G 6 HOH A 35 335 232 HOH HOH . G 6 HOH A 36 336 297 HOH HOH . G 6 HOH A 37 337 229 HOH HOH . G 6 HOH A 38 338 207 HOH HOH . G 6 HOH A 39 339 237 HOH HOH . G 6 HOH A 40 340 205 HOH HOH . G 6 HOH A 41 341 255 HOH HOH . G 6 HOH A 42 342 272 HOH HOH . G 6 HOH A 43 343 276 HOH HOH . G 6 HOH A 44 344 203 HOH HOH . G 6 HOH A 45 345 295 HOH HOH . G 6 HOH A 46 346 211 HOH HOH . G 6 HOH A 47 347 210 HOH HOH . G 6 HOH A 48 348 215 HOH HOH . G 6 HOH A 49 349 230 HOH HOH . G 6 HOH A 50 350 235 HOH HOH . G 6 HOH A 51 351 274 HOH HOH . G 6 HOH A 52 352 234 HOH HOH . G 6 HOH A 53 353 308 HOH HOH . G 6 HOH A 54 354 321 HOH HOH . G 6 HOH A 55 355 282 HOH HOH . G 6 HOH A 56 356 218 HOH HOH . G 6 HOH A 57 357 301 HOH HOH . G 6 HOH A 58 358 292 HOH HOH . G 6 HOH A 59 359 250 HOH HOH . G 6 HOH A 60 360 293 HOH HOH . G 6 HOH A 61 361 225 HOH HOH . G 6 HOH A 62 362 202 HOH HOH . G 6 HOH A 63 363 284 HOH HOH . G 6 HOH A 64 364 219 HOH HOH . G 6 HOH A 65 365 333 HOH HOH . G 6 HOH A 66 366 263 HOH HOH . G 6 HOH A 67 367 279 HOH HOH . G 6 HOH A 68 368 204 HOH HOH . G 6 HOH A 69 369 287 HOH HOH . G 6 HOH A 70 370 267 HOH HOH . G 6 HOH A 71 371 332 HOH HOH . G 6 HOH A 72 372 339 HOH HOH . G 6 HOH A 73 373 305 HOH HOH . G 6 HOH A 74 374 299 HOH HOH . G 6 HOH A 75 375 233 HOH HOH . G 6 HOH A 76 376 273 HOH HOH . G 6 HOH A 77 377 324 HOH HOH . G 6 HOH A 78 378 286 HOH HOH . G 6 HOH A 79 379 291 HOH HOH . G 6 HOH A 80 380 315 HOH HOH . G 6 HOH A 81 381 296 HOH HOH . G 6 HOH A 82 382 275 HOH HOH . G 6 HOH A 83 383 260 HOH HOH . G 6 HOH A 84 384 246 HOH HOH . G 6 HOH A 85 385 283 HOH HOH . G 6 HOH A 86 386 290 HOH HOH . G 6 HOH A 87 387 337 HOH HOH . G 6 HOH A 88 388 328 HOH HOH . G 6 HOH A 89 389 217 HOH HOH . G 6 HOH A 90 390 335 HOH HOH . G 6 HOH A 91 391 327 HOH HOH . G 6 HOH A 92 392 316 HOH HOH . G 6 HOH A 93 393 220 HOH HOH . G 6 HOH A 94 394 318 HOH HOH . G 6 HOH A 95 395 252 HOH HOH . G 6 HOH A 96 396 325 HOH HOH . G 6 HOH A 97 397 270 HOH HOH . G 6 HOH A 98 398 329 HOH HOH . G 6 HOH A 99 399 251 HOH HOH . G 6 HOH A 100 400 243 HOH HOH . G 6 HOH A 101 401 288 HOH HOH . G 6 HOH A 102 402 213 HOH HOH . G 6 HOH A 103 403 313 HOH HOH . G 6 HOH A 104 404 312 HOH HOH . G 6 HOH A 105 405 280 HOH HOH . G 6 HOH A 106 406 294 HOH HOH . G 6 HOH A 107 407 336 HOH HOH . G 6 HOH A 108 408 224 HOH HOH . G 6 HOH A 109 409 253 HOH HOH . G 6 HOH A 110 410 236 HOH HOH . G 6 HOH A 111 411 268 HOH HOH . G 6 HOH A 112 412 289 HOH HOH . G 6 HOH A 113 413 320 HOH HOH . G 6 HOH A 114 414 227 HOH HOH . G 6 HOH A 115 415 256 HOH HOH . G 6 HOH A 116 416 271 HOH HOH . G 6 HOH A 117 417 258 HOH HOH . G 6 HOH A 118 418 298 HOH HOH . G 6 HOH A 119 419 240 HOH HOH . G 6 HOH A 120 420 307 HOH HOH . G 6 HOH A 121 421 242 HOH HOH . G 6 HOH A 122 422 300 HOH HOH . G 6 HOH A 123 423 302 HOH HOH . G 6 HOH A 124 424 303 HOH HOH . G 6 HOH A 125 425 241 HOH HOH . G 6 HOH A 126 426 340 HOH HOH . G 6 HOH A 127 427 239 HOH HOH . G 6 HOH A 128 428 338 HOH HOH . G 6 HOH A 129 429 304 HOH HOH . G 6 HOH A 130 430 322 HOH HOH . G 6 HOH A 131 431 310 HOH HOH . G 6 HOH A 132 432 341 HOH HOH . G 6 HOH A 133 433 269 HOH HOH . G 6 HOH A 134 434 222 HOH HOH . G 6 HOH A 135 435 264 HOH HOH . G 6 HOH A 136 436 331 HOH HOH . G 6 HOH A 137 437 326 HOH HOH . G 6 HOH A 138 438 342 HOH HOH . G 6 HOH A 139 439 311 HOH HOH . G 6 HOH A 140 440 238 HOH HOH . G 6 HOH A 141 441 317 HOH HOH . G 6 HOH A 142 442 323 HOH HOH . G 6 HOH A 143 443 319 HOH HOH . G 6 HOH A 144 444 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . C 3 22.055 40.996 19.016 1 35.88 ? C1 DIO 202 A 1 HETATM 2 C C2 DIO . . . C 3 20.953 42.968 19.839 1 25.63 ? C2 DIO 202 A 1 HETATM 3 C C1' DIO . . . C 3 21.427 40.151 20.14 1 32.22 ? C1' DIO 202 A 1 HETATM 4 C C2' DIO . . . C 3 20.478 42.144 21.02 1 28.31 ? C2' DIO 202 A 1 HETATM 5 O O1 DIO . . . C 3 22.199 42.381 19.377 1 40.06 ? O1 DIO 202 A 1 HETATM 6 O O1' DIO . . . C 3 20.282 40.771 20.743 1 27.03 ? O1' DIO 202 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #