data_5MJJ # _model_server_result.job_id -Vx7-Q-joaVyG4N9wgL1sA _model_server_result.datetime_utc '2024-10-19 03:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5MJJ # _exptl.entry_id 5MJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MJJ _cell.length_a 79.1 _cell.length_b 79.1 _cell.length_c 37.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc4 C NA NA . A NA 202 1_555 D O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc5 C NA NA . A NA 202 1_555 D O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MJJ _atom_sites.fract_transf_matrix[1][1] 0.012642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 3 NA A 1 202 1 NA NA . D 4 HOH A 1 301 103 HOH HOH . D 4 HOH A 2 302 22 HOH HOH . D 4 HOH A 3 303 96 HOH HOH . D 4 HOH A 4 304 27 HOH HOH . D 4 HOH A 5 305 29 HOH HOH . D 4 HOH A 6 306 70 HOH HOH . D 4 HOH A 7 307 6 HOH HOH . D 4 HOH A 8 308 53 HOH HOH . D 4 HOH A 9 309 121 HOH HOH . D 4 HOH A 10 310 76 HOH HOH . D 4 HOH A 11 311 84 HOH HOH . D 4 HOH A 12 312 2 HOH HOH . D 4 HOH A 13 313 54 HOH HOH . D 4 HOH A 14 314 52 HOH HOH . D 4 HOH A 15 315 125 HOH HOH . D 4 HOH A 16 316 26 HOH HOH . D 4 HOH A 17 317 98 HOH HOH . D 4 HOH A 18 318 118 HOH HOH . D 4 HOH A 19 319 3 HOH HOH . D 4 HOH A 20 320 80 HOH HOH . D 4 HOH A 21 321 74 HOH HOH . D 4 HOH A 22 322 82 HOH HOH . D 4 HOH A 23 323 102 HOH HOH . D 4 HOH A 24 324 11 HOH HOH . D 4 HOH A 25 325 112 HOH HOH . D 4 HOH A 26 326 56 HOH HOH . D 4 HOH A 27 327 31 HOH HOH . D 4 HOH A 28 328 42 HOH HOH . D 4 HOH A 29 329 67 HOH HOH . D 4 HOH A 30 330 73 HOH HOH . D 4 HOH A 31 331 114 HOH HOH . D 4 HOH A 32 332 39 HOH HOH . D 4 HOH A 33 333 13 HOH HOH . D 4 HOH A 34 334 55 HOH HOH . D 4 HOH A 35 335 85 HOH HOH . D 4 HOH A 36 336 40 HOH HOH . D 4 HOH A 37 337 49 HOH HOH . D 4 HOH A 38 338 43 HOH HOH . D 4 HOH A 39 339 41 HOH HOH . D 4 HOH A 40 340 10 HOH HOH . D 4 HOH A 41 341 34 HOH HOH . D 4 HOH A 42 342 91 HOH HOH . D 4 HOH A 43 343 20 HOH HOH . D 4 HOH A 44 344 47 HOH HOH . D 4 HOH A 45 345 17 HOH HOH . D 4 HOH A 46 346 65 HOH HOH . D 4 HOH A 47 347 37 HOH HOH . D 4 HOH A 48 348 95 HOH HOH . D 4 HOH A 49 349 24 HOH HOH . D 4 HOH A 50 350 61 HOH HOH . D 4 HOH A 51 351 63 HOH HOH . D 4 HOH A 52 352 104 HOH HOH . D 4 HOH A 53 353 36 HOH HOH . D 4 HOH A 54 354 9 HOH HOH . D 4 HOH A 55 355 33 HOH HOH . D 4 HOH A 56 356 51 HOH HOH . D 4 HOH A 57 357 7 HOH HOH . D 4 HOH A 58 358 23 HOH HOH . D 4 HOH A 59 359 78 HOH HOH . D 4 HOH A 60 360 15 HOH HOH . D 4 HOH A 61 361 75 HOH HOH . D 4 HOH A 62 362 48 HOH HOH . D 4 HOH A 63 363 14 HOH HOH . D 4 HOH A 64 364 111 HOH HOH . D 4 HOH A 65 365 30 HOH HOH . D 4 HOH A 66 366 62 HOH HOH . D 4 HOH A 67 367 4 HOH HOH . D 4 HOH A 68 368 8 HOH HOH . D 4 HOH A 69 369 124 HOH HOH . D 4 HOH A 70 370 32 HOH HOH . D 4 HOH A 71 371 12 HOH HOH . D 4 HOH A 72 372 46 HOH HOH . D 4 HOH A 73 373 45 HOH HOH . D 4 HOH A 74 374 21 HOH HOH . D 4 HOH A 75 375 25 HOH HOH . D 4 HOH A 76 376 123 HOH HOH . D 4 HOH A 77 377 115 HOH HOH . D 4 HOH A 78 378 94 HOH HOH . D 4 HOH A 79 379 18 HOH HOH . D 4 HOH A 80 380 38 HOH HOH . D 4 HOH A 81 381 64 HOH HOH . D 4 HOH A 82 382 105 HOH HOH . D 4 HOH A 83 383 71 HOH HOH . D 4 HOH A 84 384 108 HOH HOH . D 4 HOH A 85 385 81 HOH HOH . D 4 HOH A 86 386 106 HOH HOH . D 4 HOH A 87 387 69 HOH HOH . D 4 HOH A 88 388 19 HOH HOH . D 4 HOH A 89 389 116 HOH HOH . D 4 HOH A 90 390 110 HOH HOH . D 4 HOH A 91 391 90 HOH HOH . D 4 HOH A 92 392 77 HOH HOH . D 4 HOH A 93 393 59 HOH HOH . D 4 HOH A 94 394 60 HOH HOH . D 4 HOH A 95 395 87 HOH HOH . D 4 HOH A 96 396 68 HOH HOH . D 4 HOH A 97 397 79 HOH HOH . D 4 HOH A 98 398 127 HOH HOH . D 4 HOH A 99 399 128 HOH HOH . D 4 HOH A 100 400 100 HOH HOH . D 4 HOH A 101 401 35 HOH HOH . D 4 HOH A 102 402 101 HOH HOH . D 4 HOH A 103 403 58 HOH HOH . D 4 HOH A 104 404 126 HOH HOH . D 4 HOH A 105 405 122 HOH HOH . D 4 HOH A 106 406 89 HOH HOH . D 4 HOH A 107 407 113 HOH HOH . D 4 HOH A 108 408 109 HOH HOH . D 4 HOH A 109 409 83 HOH HOH . D 4 HOH A 110 410 93 HOH HOH . D 4 HOH A 111 411 107 HOH HOH . D 4 HOH A 112 412 88 HOH HOH . D 4 HOH A 113 413 119 HOH HOH . D 4 HOH A 114 414 120 HOH HOH . D 4 HOH A 115 415 57 HOH HOH . D 4 HOH A 116 416 117 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.434 _atom_site.Cartn_y -14.484 _atom_site.Cartn_z 12.996 _atom_site.occupancy 0.51 _atom_site.B_iso_or_equiv 20.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #