data_5MJS # _model_server_result.job_id sl7AcfrzyF_AYp4KlBajAw _model_server_result.datetime_utc '2025-03-06 01:03:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mjs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":500}' # _entry.id 5MJS # _exptl.entry_id 5MJS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MJS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MJS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 GDP A 1 500 500 GDP GDP . K 5 GTP E 1 500 500 GTP GTP . L 5 GTP F 1 500 500 GTP GTP . M 5 GTP G 1 500 500 GTP GTP . N 5 GTP H 1 500 500 GTP GTP . O 4 GDP J 1 500 500 GDP GDP . P 4 GDP B 1 500 500 GDP GDP . Q 4 GDP C 1 500 500 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . M 5 69.784 94.534 100.208 1 49.11 ? PG GTP 500 G 1 HETATM 2 O O1G GTP . . . M 5 69.841 94.004 98.804 1 49.11 ? O1G GTP 500 G 1 HETATM 3 O O2G GTP . . . M 5 71.177 94.674 100.724 1 49.11 ? O2G GTP 500 G 1 HETATM 4 O O3G GTP . . . M 5 69.059 93.598 101.132 1 49.11 ? O3G GTP 500 G 1 HETATM 5 O O3B GTP . . . M 5 69.067 95.951 100.268 1 49.11 ? O3B GTP 500 G 1 HETATM 6 P PB GTP . . . M 5 68.59 96.457 101.705 1 49.11 ? PB GTP 500 G 1 HETATM 7 O O1B GTP . . . M 5 67.128 96.194 101.924 1 49.11 ? O1B GTP 500 G 1 HETATM 8 O O2B GTP . . . M 5 69.385 95.874 102.835 1 49.11 ? O2B GTP 500 G 1 HETATM 9 O O3A GTP . . . M 5 68.928 98.007 101.557 1 49.11 ? O3A GTP 500 G 1 HETATM 10 P PA GTP . . . M 5 70.408 98.411 101.097 1 49.11 ? PA GTP 500 G 1 HETATM 11 O O1A GTP . . . M 5 71.398 97.371 101.525 1 49.11 ? O1A GTP 500 G 1 HETATM 12 O O2A GTP . . . M 5 70.755 99.714 101.749 1 49.11 ? O2A GTP 500 G 1 HETATM 13 O O5' GTP . . . M 5 70.367 98.691 99.522 1 49.11 ? O5' GTP 500 G 1 HETATM 14 C C5' GTP . . . M 5 69.898 99.96 99.141 1 49.11 ? C5' GTP 500 G 1 HETATM 15 C C4' GTP . . . M 5 70.981 100.848 98.539 1 49.11 ? C4' GTP 500 G 1 HETATM 16 O O4' GTP . . . M 5 70.412 101.493 97.428 1 49.11 ? O4' GTP 500 G 1 HETATM 17 C C3' GTP . . . M 5 71.444 101.981 99.441 1 49.11 ? C3' GTP 500 G 1 HETATM 18 O O3' GTP . . . M 5 72.733 101.706 99.924 1 49.11 ? O3' GTP 500 G 1 HETATM 19 C C2' GTP . . . M 5 71.533 103.204 98.564 1 49.11 ? C2' GTP 500 G 1 HETATM 20 O O2' GTP . . . M 5 72.882 103.465 98.337 1 49.11 ? O2' GTP 500 G 1 HETATM 21 C C1' GTP . . . M 5 71.042 102.733 97.229 1 49.11 ? C1' GTP 500 G 1 HETATM 22 N N9 GTP . . . M 5 70.117 103.627 96.542 1 49.11 ? N9 GTP 500 G 1 HETATM 23 C C8 GTP . . . M 5 70.443 104.691 95.761 1 49.11 ? C8 GTP 500 G 1 HETATM 24 N N7 GTP . . . M 5 69.315 105.222 95.266 1 49.11 ? N7 GTP 500 G 1 HETATM 25 C C5 GTP . . . M 5 68.298 104.474 95.701 1 49.11 ? C5 GTP 500 G 1 HETATM 26 C C6 GTP . . . M 5 66.964 104.587 95.472 1 49.11 ? C6 GTP 500 G 1 HETATM 27 O O6 GTP . . . M 5 66.587 105.518 94.793 1 49.11 ? O6 GTP 500 G 1 HETATM 28 N N1 GTP . . . M 5 66.092 103.721 96.049 1 49.11 ? N1 GTP 500 G 1 HETATM 29 C C2 GTP . . . M 5 66.592 102.728 96.841 1 49.11 ? C2 GTP 500 G 1 HETATM 30 N N2 GTP . . . M 5 65.737 101.873 97.371 1 49.11 ? N2 GTP 500 G 1 HETATM 31 N N3 GTP . . . M 5 67.942 102.59 97.059 1 49.11 ? N3 GTP 500 G 1 HETATM 32 C C4 GTP . . . M 5 68.777 103.472 96.497 1 49.11 ? C4 GTP 500 G 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #