data_5MJS # _model_server_result.job_id bzfwZIVDWWi7B5krFQazng _model_server_result.datetime_utc '2025-03-06 00:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mjs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":500}' # _entry.id 5MJS # _exptl.entry_id 5MJS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MJS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MJS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 GDP A 1 500 500 GDP GDP . K 5 GTP E 1 500 500 GTP GTP . L 5 GTP F 1 500 500 GTP GTP . M 5 GTP G 1 500 500 GTP GTP . N 5 GTP H 1 500 500 GTP GTP . O 4 GDP J 1 500 500 GDP GDP . P 4 GDP B 1 500 500 GDP GDP . Q 4 GDP C 1 500 500 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . N 5 36.644 52.357 109.813 1 43.38 ? PG GTP 500 H 1 HETATM 2 O O1G GTP . . . N 5 36.544 51.92 108.386 1 43.38 ? O1G GTP 500 H 1 HETATM 3 O O2G GTP . . . N 5 37.871 51.722 110.38 1 43.38 ? O2G GTP 500 H 1 HETATM 4 O O3G GTP . . . N 5 35.441 51.923 110.601 1 43.38 ? O3G GTP 500 H 1 HETATM 5 O O3B GTP . . . N 5 36.734 53.941 109.9 1 43.38 ? O3B GTP 500 H 1 HETATM 6 P PB GTP . . . N 5 36.413 54.566 111.332 1 43.38 ? PB GTP 500 H 1 HETATM 7 O O1B GTP . . . N 5 34.978 54.977 111.492 1 43.38 ? O1B GTP 500 H 1 HETATM 8 O O2B GTP . . . N 5 36.79 53.646 112.442 1 43.38 ? O2B GTP 500 H 1 HETATM 9 O O3A GTP . . . N 5 37.451 55.763 111.324 1 43.38 ? O3A GTP 500 H 1 HETATM 10 P PA GTP . . . N 5 38.932 55.38 110.858 1 43.38 ? PA GTP 500 H 1 HETATM 11 O O1A GTP . . . N 5 39.319 53.977 111.219 1 43.38 ? O1A GTP 500 H 1 HETATM 12 O O2A GTP . . . N 5 39.874 56.327 111.53 1 43.38 ? O2A GTP 500 H 1 HETATM 13 O O5' GTP . . . N 5 38.972 55.667 109.289 1 43.38 ? O5' GTP 500 H 1 HETATM 14 C C5' GTP . . . N 5 39.156 57.005 108.923 1 43.38 ? C5' GTP 500 H 1 HETATM 15 C C4' GTP . . . N 5 40.533 57.227 108.314 1 43.38 ? C4' GTP 500 H 1 HETATM 16 O O4' GTP . . . N 5 40.351 58.085 107.221 1 43.38 ? O4' GTP 500 H 1 HETATM 17 C C3' GTP . . . N 5 41.525 57.954 109.211 1 43.38 ? C3' GTP 500 H 1 HETATM 18 O O3' GTP . . . N 5 42.511 57.048 109.632 1 43.38 ? O3' GTP 500 H 1 HETATM 19 C C2' GTP . . . N 5 42.187 59.014 108.365 1 43.38 ? C2' GTP 500 H 1 HETATM 20 O O2' GTP . . . N 5 43.503 58.613 108.127 1 43.38 ? O2' GTP 500 H 1 HETATM 21 C C1' GTP . . . N 5 41.505 58.869 107.04 1 43.38 ? C1' GTP 500 H 1 HETATM 22 N N9 GTP . . . N 5 41.132 60.093 106.34 1 43.38 ? N9 GTP 500 H 1 HETATM 23 C C8 GTP . . . N 5 41.964 60.84 105.576 1 43.38 ? C8 GTP 500 H 1 HETATM 24 N N7 GTP . . . N 5 41.265 61.849 105.034 1 43.38 ? N7 GTP 500 H 1 HETATM 25 C C5 GTP . . . N 5 39.992 61.721 105.419 1 43.38 ? C5 GTP 500 H 1 HETATM 26 C C6 GTP . . . N 5 38.88 62.463 105.125 1 43.38 ? C6 GTP 500 H 1 HETATM 27 O O6 GTP . . . N 5 38.986 63.461 104.431 1 43.38 ? O6 GTP 500 H 1 HETATM 28 N N1 GTP . . . N 5 37.68 62.142 105.678 1 43.38 ? N1 GTP 500 H 1 HETATM 29 C C2 GTP . . . N 5 37.591 61.046 106.489 1 43.38 ? C2 GTP 500 H 1 HETATM 30 N N2 GTP . . . N 5 36.408 60.716 106.988 1 43.38 ? N2 GTP 500 H 1 HETATM 31 N N3 GTP . . . N 5 38.698 60.274 106.756 1 43.38 ? N3 GTP 500 H 1 HETATM 32 C C4 GTP . . . N 5 39.886 60.62 106.233 1 43.38 ? C4 GTP 500 H 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #