data_5MJT # _model_server_result.job_id OoyBglLm8aJkNhynfvFn3w _model_server_result.datetime_utc '2024-11-01 01:34:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":306}' # _entry.id 5MJT # _exptl.entry_id 5MJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.73 _cell.angle_gamma 90 _cell.entry_id 5MJT _cell.length_a 69.492 _cell.length_b 71.613 _cell.length_c 72.129 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 C C GLU 9 D GLU 525 1_555 C N TYS 10 D TYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C TYS 10 D TYS 526 1_555 C N LEU 11 D LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 L NA NA . H NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 L NA NA . H NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 B O PHE 215 H PHE 204 1_555 L NA NA . H NA 309 4_556 A ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 K NA NA . H NA 308 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 K NA NA . H NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 K NA NA . H NA 308 1_555 O O HOH . H HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc7 K NA NA . H NA 308 1_555 O O HOH . H HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc8 K NA NA . H NA 308 1_555 O O HOH . H HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc9 K NA NA . H NA 308 1_555 O O HOH . H HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc10 L NA NA . H NA 309 1_555 O O HOH . H HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc11 L NA NA . H NA 309 1_555 O O HOH . H HOH 493 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc12 L NA NA . H NA 309 1_555 O O HOH . H HOH 558 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 202 n n C1 C2 GOL sing 203 n n C1 H11 GOL sing 204 n n C1 H12 GOL sing 205 n n O1 HO1 GOL sing 206 n n C2 O2 GOL sing 207 n n C2 C3 GOL sing 208 n n C2 H2 GOL sing 209 n n O2 HO2 GOL sing 210 n n C3 O3 GOL sing 211 n n C3 H31 GOL sing 212 n n C3 H32 GOL sing 213 n n O3 HO3 GOL sing 214 n n # _atom_sites.entry_id 5MJT _atom_sites.fract_transf_matrix[1][1] 0.01439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002467 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 23U H 1 301 1 23U T23 . E 5 DMS H 1 302 1 DMS DMS . F 6 PO4 H 1 303 2 PO4 PO4 . G 7 GOL H 1 304 3 GOL GOL . H 7 GOL H 1 305 4 GOL GOL . I 7 GOL H 1 306 5 GOL GOL . J 7 GOL H 1 307 6 GOL GOL . K 8 NA H 1 308 7 NA NA . L 8 NA H 1 309 8 NA NA . M 7 GOL H 1 310 1 GOL GOL . N 9 HOH L 1 101 96 HOH HOH . N 9 HOH L 2 102 84 HOH HOH . N 9 HOH L 3 103 89 HOH HOH . N 9 HOH L 4 104 168 HOH HOH . N 9 HOH L 5 105 142 HOH HOH . N 9 HOH L 6 106 194 HOH HOH . N 9 HOH L 7 107 174 HOH HOH . N 9 HOH L 8 108 214 HOH HOH . N 9 HOH L 9 109 204 HOH HOH . N 9 HOH L 10 110 63 HOH HOH . N 9 HOH L 11 111 1 HOH HOH . N 9 HOH L 12 112 18 HOH HOH . N 9 HOH L 13 113 2 HOH HOH . N 9 HOH L 14 114 153 HOH HOH . N 9 HOH L 15 115 -10 HOH HOH . N 9 HOH L 16 116 -3 HOH HOH . N 9 HOH L 17 117 -4 HOH HOH . N 9 HOH L 18 118 120 HOH HOH . N 9 HOH L 19 119 29 HOH HOH . N 9 HOH L 20 120 211 HOH HOH . N 9 HOH L 21 121 25 HOH HOH . N 9 HOH L 22 122 9 HOH HOH . N 9 HOH L 23 123 207 HOH HOH . N 9 HOH L 24 124 27 HOH HOH . N 9 HOH L 25 125 157 HOH HOH . N 9 HOH L 26 126 158 HOH HOH . N 9 HOH L 27 127 178 HOH HOH . N 9 HOH L 28 128 35 HOH HOH . N 9 HOH L 29 129 187 HOH HOH . N 9 HOH L 30 130 95 HOH HOH . N 9 HOH L 31 131 117 HOH HOH . N 9 HOH L 32 132 146 HOH HOH . O 9 HOH H 1 401 221 HOH HOH . O 9 HOH H 2 402 164 HOH HOH . O 9 HOH H 3 403 162 HOH HOH . O 9 HOH H 4 404 215 HOH HOH . O 9 HOH H 5 405 80 HOH HOH . O 9 HOH H 6 406 88 HOH HOH . O 9 HOH H 7 407 64 HOH HOH . O 9 HOH H 8 408 189 HOH HOH . O 9 HOH H 9 409 191 HOH HOH . O 9 HOH H 10 410 179 HOH HOH . O 9 HOH H 11 411 119 HOH HOH . O 9 HOH H 12 412 198 HOH HOH . O 9 HOH H 13 413 171 HOH HOH . O 9 HOH H 14 414 104 HOH HOH . O 9 HOH H 15 415 42 HOH HOH . O 9 HOH H 16 416 53 HOH HOH . O 9 HOH H 17 417 39 HOH HOH . O 9 HOH H 18 418 141 HOH HOH . O 9 HOH H 19 419 200 HOH HOH . O 9 HOH H 20 420 203 HOH HOH . O 9 HOH H 21 421 6 HOH HOH . O 9 HOH H 22 422 23 HOH HOH . O 9 HOH H 23 423 186 HOH HOH . O 9 HOH H 24 424 30 HOH HOH . O 9 HOH H 25 425 -20 HOH HOH . O 9 HOH H 26 426 37 HOH HOH . O 9 HOH H 27 427 -25 HOH HOH . O 9 HOH H 28 428 15 HOH HOH . O 9 HOH H 29 429 131 HOH HOH . O 9 HOH H 30 430 19 HOH HOH . O 9 HOH H 31 431 -29 HOH HOH . O 9 HOH H 32 432 60 HOH HOH . O 9 HOH H 33 433 201 HOH HOH . O 9 HOH H 34 434 193 HOH HOH . O 9 HOH H 35 435 48 HOH HOH . O 9 HOH H 36 436 78 HOH HOH . O 9 HOH H 37 437 218 HOH HOH . O 9 HOH H 38 438 49 HOH HOH . O 9 HOH H 39 439 -8 HOH HOH . O 9 HOH H 40 440 52 HOH HOH . O 9 HOH H 41 441 105 HOH HOH . O 9 HOH H 42 442 137 HOH HOH . O 9 HOH H 43 443 33 HOH HOH . O 9 HOH H 44 444 102 HOH HOH . O 9 HOH H 45 445 135 HOH HOH . O 9 HOH H 46 446 154 HOH HOH . O 9 HOH H 47 447 32 HOH HOH . O 9 HOH H 48 448 38 HOH HOH . O 9 HOH H 49 449 97 HOH HOH . O 9 HOH H 50 450 -13 HOH HOH . O 9 HOH H 51 451 185 HOH HOH . O 9 HOH H 52 452 149 HOH HOH . O 9 HOH H 53 453 -21 HOH HOH . O 9 HOH H 54 454 12 HOH HOH . O 9 HOH H 55 455 7 HOH HOH . O 9 HOH H 56 456 -15 HOH HOH . O 9 HOH H 57 457 -6 HOH HOH . O 9 HOH H 58 458 140 HOH HOH . O 9 HOH H 59 459 136 HOH HOH . O 9 HOH H 60 460 86 HOH HOH . O 9 HOH H 61 461 161 HOH HOH . O 9 HOH H 62 462 167 HOH HOH . O 9 HOH H 63 463 202 HOH HOH . O 9 HOH H 64 464 0 HOH HOH . O 9 HOH H 65 465 20 HOH HOH . O 9 HOH H 66 466 109 HOH HOH . O 9 HOH H 67 467 115 HOH HOH . O 9 HOH H 68 468 -32 HOH HOH . O 9 HOH H 69 469 10 HOH HOH . O 9 HOH H 70 470 11 HOH HOH . O 9 HOH H 71 471 99 HOH HOH . O 9 HOH H 72 472 -27 HOH HOH . O 9 HOH H 73 473 45 HOH HOH . O 9 HOH H 74 474 56 HOH HOH . O 9 HOH H 75 475 41 HOH HOH . O 9 HOH H 76 476 152 HOH HOH . O 9 HOH H 77 477 24 HOH HOH . O 9 HOH H 78 478 31 HOH HOH . O 9 HOH H 79 479 172 HOH HOH . O 9 HOH H 80 480 44 HOH HOH . O 9 HOH H 81 481 -30 HOH HOH . O 9 HOH H 82 482 -34 HOH HOH . O 9 HOH H 83 483 -11 HOH HOH . O 9 HOH H 84 484 34 HOH HOH . O 9 HOH H 85 485 -26 HOH HOH . O 9 HOH H 86 486 4 HOH HOH . O 9 HOH H 87 487 40 HOH HOH . O 9 HOH H 88 488 -9 HOH HOH . O 9 HOH H 89 489 160 HOH HOH . O 9 HOH H 90 490 -23 HOH HOH . O 9 HOH H 91 491 3 HOH HOH . O 9 HOH H 92 492 94 HOH HOH . O 9 HOH H 93 493 -19 HOH HOH . O 9 HOH H 94 494 195 HOH HOH . O 9 HOH H 95 495 116 HOH HOH . O 9 HOH H 96 496 143 HOH HOH . O 9 HOH H 97 497 69 HOH HOH . O 9 HOH H 98 498 205 HOH HOH . O 9 HOH H 99 499 65 HOH HOH . O 9 HOH H 100 500 145 HOH HOH . O 9 HOH H 101 501 51 HOH HOH . O 9 HOH H 102 502 58 HOH HOH . O 9 HOH H 103 503 62 HOH HOH . O 9 HOH H 104 504 138 HOH HOH . O 9 HOH H 105 505 132 HOH HOH . O 9 HOH H 106 506 156 HOH HOH . O 9 HOH H 107 507 -24 HOH HOH . O 9 HOH H 108 508 126 HOH HOH . O 9 HOH H 109 509 -12 HOH HOH . O 9 HOH H 110 510 5 HOH HOH . O 9 HOH H 111 511 -28 HOH HOH . O 9 HOH H 112 512 -2 HOH HOH . O 9 HOH H 113 513 124 HOH HOH . O 9 HOH H 114 514 133 HOH HOH . O 9 HOH H 115 515 -1 HOH HOH . O 9 HOH H 116 516 -7 HOH HOH . O 9 HOH H 117 517 111 HOH HOH . O 9 HOH H 118 518 70 HOH HOH . O 9 HOH H 119 519 -31 HOH HOH . O 9 HOH H 120 520 219 HOH HOH . O 9 HOH H 121 521 -5 HOH HOH . O 9 HOH H 122 522 188 HOH HOH . O 9 HOH H 123 523 21 HOH HOH . O 9 HOH H 124 524 127 HOH HOH . O 9 HOH H 125 525 81 HOH HOH . O 9 HOH H 126 526 150 HOH HOH . O 9 HOH H 127 527 66 HOH HOH . O 9 HOH H 128 528 148 HOH HOH . O 9 HOH H 129 529 22 HOH HOH . O 9 HOH H 130 530 59 HOH HOH . O 9 HOH H 131 531 175 HOH HOH . O 9 HOH H 132 532 61 HOH HOH . O 9 HOH H 133 533 199 HOH HOH . O 9 HOH H 134 534 67 HOH HOH . O 9 HOH H 135 535 182 HOH HOH . O 9 HOH H 136 536 28 HOH HOH . O 9 HOH H 137 537 77 HOH HOH . O 9 HOH H 138 538 57 HOH HOH . O 9 HOH H 139 539 217 HOH HOH . O 9 HOH H 140 540 180 HOH HOH . O 9 HOH H 141 541 71 HOH HOH . O 9 HOH H 142 542 139 HOH HOH . O 9 HOH H 143 543 72 HOH HOH . O 9 HOH H 144 544 210 HOH HOH . O 9 HOH H 145 545 151 HOH HOH . O 9 HOH H 146 546 103 HOH HOH . O 9 HOH H 147 547 68 HOH HOH . O 9 HOH H 148 548 129 HOH HOH . O 9 HOH H 149 549 -16 HOH HOH . O 9 HOH H 150 550 213 HOH HOH . O 9 HOH H 151 551 13 HOH HOH . O 9 HOH H 152 552 147 HOH HOH . O 9 HOH H 153 553 108 HOH HOH . O 9 HOH H 154 554 55 HOH HOH . O 9 HOH H 155 555 73 HOH HOH . O 9 HOH H 156 556 197 HOH HOH . O 9 HOH H 157 557 17 HOH HOH . O 9 HOH H 158 558 128 HOH HOH . O 9 HOH H 159 559 122 HOH HOH . O 9 HOH H 160 560 165 HOH HOH . O 9 HOH H 161 561 220 HOH HOH . O 9 HOH H 162 562 216 HOH HOH . O 9 HOH H 163 563 177 HOH HOH . O 9 HOH H 164 564 183 HOH HOH . O 9 HOH H 165 565 144 HOH HOH . O 9 HOH H 166 566 54 HOH HOH . O 9 HOH H 167 567 113 HOH HOH . O 9 HOH H 168 568 173 HOH HOH . O 9 HOH H 169 569 83 HOH HOH . O 9 HOH H 170 570 181 HOH HOH . O 9 HOH H 171 571 169 HOH HOH . O 9 HOH H 172 572 163 HOH HOH . O 9 HOH H 173 573 114 HOH HOH . O 9 HOH H 174 574 155 HOH HOH . O 9 HOH H 175 575 206 HOH HOH . O 9 HOH H 176 576 125 HOH HOH . O 9 HOH H 177 577 176 HOH HOH . O 9 HOH H 178 578 76 HOH HOH . O 9 HOH H 179 579 212 HOH HOH . O 9 HOH H 180 580 209 HOH HOH . P 9 HOH D 1 601 196 HOH HOH . P 9 HOH D 2 602 134 HOH HOH . P 9 HOH D 3 603 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 7 21.445 -3.673 39.587 1 26.83 ? C1 GOL 306 H 1 HETATM 2 O O1 GOL . . . I 7 20.035 -3.586 39.444 1 30.37 ? O1 GOL 306 H 1 HETATM 3 C C2 GOL . . . I 7 21.988 -4.29 38.312 1 20.09 ? C2 GOL 306 H 1 HETATM 4 O O2 GOL . . . I 7 21.744 -3.381 37.235 1 14.02 ? O2 GOL 306 H 1 HETATM 5 C C3 GOL . . . I 7 23.441 -4.767 38.381 1 18.97 ? C3 GOL 306 H 1 HETATM 6 O O3 GOL . . . I 7 24.315 -3.655 38.594 1 18.79 ? O3 GOL 306 H 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #