data_5MKG
#
_model_server_result.job_id            y489RO_9IvZpQgAX4QWKfQ 
_model_server_result.datetime_utc      '2024-11-28 05:35:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mkg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    5MKG 
#
_exptl.entry_id    5MKG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.03 
_cell.angle_gamma         90 
_cell.entry_id            5MKG 
_cell.length_a            112.23 
_cell.length_b            59.4 
_cell.length_c            92.78 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MKG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,L 1 1 
B,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 35 A GLU 39 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc2 A OD1 ASN 94 A ASN 98 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc3 A OE1 GLU 126 A GLU 130 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc4 A OE2 GLU 131 A GLU 135 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? 
metalc ? metalc5 A OD1 ASP 156 A ASP 160 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? 
metalc ? metalc6 A OD2 ASP 156 A ASP 160 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc7 A OD1 ASP 157 A ASP 161 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc8 A OD1 ASP 179 A ASP 183 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc9 A OE1 GLU 213 A GLU 217 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc10 C CA CA . A CA 301 1_555 L O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc11 D CA CA . A CA 302 1_555 F O1P C2E . A C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc12 D CA CA . A CA 302 1_555 L O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc13 E CA CA . A CA 303 1_555 F O2P C2E . A C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc14 E CA CA . A CA 303 1_555 L O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc15 B OE2 GLU 34 B GLU 39 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc16 B OD1 ASN 93 B ASN 98 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc17 B O ILE 94 B ILE 99 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? 
metalc ? metalc18 B OE1 GLU 125 B GLU 130 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc19 B OE2 GLU 130 B GLU 135 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? 
metalc ? metalc20 B OD2 ASP 155 B ASP 160 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc21 B OD1 ASP 155 B ASP 160 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc22 B OD1 ASP 156 B ASP 161 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc23 B OE1 GLU 212 B GLU 217 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc24 B OE2 GLU 212 B GLU 217 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc25 B OD1 ASP 229 B ASP 234 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc26 B OD2 ASP 229 B ASP 234 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc27 G CA CA . B CA 301 1_555 M O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc28 H CA CA . B CA 302 1_555 J O21 C2E . B C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc29 H CA CA . B CA 302 1_555 M O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc30 I CA CA . B CA 303 1_555 J O11 C2E . B C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc31 I CA CA . B CA 303 1_555 J O5A C2E . B C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? 
metalc ? metalc32 I CA CA . B CA 303 1_555 M O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc33 K CA CA . B CA 305 1_555 M O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc34 K CA CA . B CA 305 1_555 M O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? 
metalc ? metalc35 K CA CA . B CA 305 1_555 M O HOH . B HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc36 K CA CA . B CA 305 1_555 M O HOH . B HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5MKG 
_atom_sites.fract_transf_matrix[1][1]    0.00891 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004161 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 301 301 CA CA . 
D 3 CA A 1 302 302 CA CA . 
E 3 CA A 1 303 303 CA CA . 
F 4 C2E A 1 304 304 C2E C2E . 
G 3 CA B 1 301 301 CA CA . 
H 3 CA B 1 302 302 CA CA . 
I 3 CA B 1 303 303 CA CA . 
J 4 C2E B 1 304 304 C2E C2E . 
K 3 CA B 1 305 1 CA CA . 
L 5 HOH A 1 401 42 HOH HOH . 
L 5 HOH A 2 402 99 HOH HOH . 
L 5 HOH A 3 403 115 HOH HOH . 
L 5 HOH A 4 404 13 HOH HOH . 
L 5 HOH A 5 405 8 HOH HOH . 
L 5 HOH A 6 406 2 HOH HOH . 
L 5 HOH A 7 407 107 HOH HOH . 
L 5 HOH A 8 408 4 HOH HOH . 
L 5 HOH A 9 409 53 HOH HOH . 
L 5 HOH A 10 410 41 HOH HOH . 
L 5 HOH A 11 411 70 HOH HOH . 
L 5 HOH A 12 412 46 HOH HOH . 
L 5 HOH A 13 413 16 HOH HOH . 
L 5 HOH A 14 414 140 HOH HOH . 
L 5 HOH A 15 415 95 HOH HOH . 
L 5 HOH A 16 416 3 HOH HOH . 
L 5 HOH A 17 417 34 HOH HOH . 
L 5 HOH A 18 418 28 HOH HOH . 
L 5 HOH A 19 419 174 HOH HOH . 
L 5 HOH A 20 420 101 HOH HOH . 
L 5 HOH A 21 421 76 HOH HOH . 
L 5 HOH A 22 422 21 HOH HOH . 
L 5 HOH A 23 423 131 HOH HOH . 
L 5 HOH A 24 424 30 HOH HOH . 
L 5 HOH A 25 425 58 HOH HOH . 
L 5 HOH A 26 426 15 HOH HOH . 
L 5 HOH A 27 427 33 HOH HOH . 
L 5 HOH A 28 428 96 HOH HOH . 
L 5 HOH A 29 429 182 HOH HOH . 
L 5 HOH A 30 430 60 HOH HOH . 
L 5 HOH A 31 431 184 HOH HOH . 
L 5 HOH A 32 432 66 HOH HOH . 
L 5 HOH A 33 433 122 HOH HOH . 
L 5 HOH A 34 434 7 HOH HOH . 
L 5 HOH A 35 435 172 HOH HOH . 
M 5 HOH B 1 401 123 HOH HOH . 
M 5 HOH B 2 402 185 HOH HOH . 
M 5 HOH B 3 403 52 HOH HOH . 
M 5 HOH B 4 404 77 HOH HOH . 
M 5 HOH B 5 405 6 HOH HOH . 
M 5 HOH B 6 406 25 HOH HOH . 
M 5 HOH B 7 407 45 HOH HOH . 
M 5 HOH B 8 408 37 HOH HOH . 
M 5 HOH B 9 409 68 HOH HOH . 
M 5 HOH B 10 410 181 HOH HOH . 
M 5 HOH B 11 411 1 HOH HOH . 
M 5 HOH B 12 412 112 HOH HOH . 
M 5 HOH B 13 413 24 HOH HOH . 
M 5 HOH B 14 414 43 HOH HOH . 
M 5 HOH B 15 415 119 HOH HOH . 
M 5 HOH B 16 416 54 HOH HOH . 
M 5 HOH B 17 417 124 HOH HOH . 
M 5 HOH B 18 418 12 HOH HOH . 
M 5 HOH B 19 419 9 HOH HOH . 
M 5 HOH B 20 420 59 HOH HOH . 
M 5 HOH B 21 421 163 HOH HOH . 
M 5 HOH B 22 422 22 HOH HOH . 
M 5 HOH B 23 423 5 HOH HOH . 
M 5 HOH B 24 424 180 HOH HOH . 
M 5 HOH B 25 425 57 HOH HOH . 
M 5 HOH B 26 426 26 HOH HOH . 
M 5 HOH B 27 427 23 HOH HOH . 
M 5 HOH B 28 428 49 HOH HOH . 
M 5 HOH B 29 429 179 HOH HOH . 
M 5 HOH B 30 430 188 HOH HOH . 
M 5 HOH B 31 431 178 HOH HOH . 
M 5 HOH B 32 432 175 HOH HOH . 
M 5 HOH B 33 433 29 HOH HOH . 
M 5 HOH B 34 434 136 HOH HOH . 
M 5 HOH B 35 435 177 HOH HOH . 
M 5 HOH B 36 436 176 HOH HOH . 
M 5 HOH B 37 437 89 HOH HOH . 
M 5 HOH B 38 438 14 HOH HOH . 
M 5 HOH B 39 439 18 HOH HOH . 
M 5 HOH B 40 440 173 HOH HOH . 
M 5 HOH B 41 441 17 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -0.052 
_atom_site.Cartn_y               -37.464 
_atom_site.Cartn_z               -18.061 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        95.42 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#