data_5MKG # _model_server_result.job_id tlWH8WrNqhA3wti1AtO8OA _model_server_result.datetime_utc '2024-11-08 01:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 5MKG # _exptl.entry_id 5MKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.03 _cell.angle_gamma 90 _cell.entry_id 5MKG _cell.length_a 112.23 _cell.length_b 59.4 _cell.length_c 92.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 35 A GLU 39 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A OD1 ASN 94 A ASN 98 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc3 A OE1 GLU 126 A GLU 130 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A OE2 GLU 131 A GLU 135 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc5 A OD1 ASP 156 A ASP 160 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc6 A OD2 ASP 156 A ASP 160 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 A OD1 ASP 157 A ASP 161 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc8 A OD1 ASP 179 A ASP 183 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc9 A OE1 GLU 213 A GLU 217 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc10 C CA CA . A CA 301 1_555 L O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc11 D CA CA . A CA 302 1_555 F O1P C2E . A C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc12 D CA CA . A CA 302 1_555 L O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc13 E CA CA . A CA 303 1_555 F O2P C2E . A C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc14 E CA CA . A CA 303 1_555 L O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc15 B OE2 GLU 34 B GLU 39 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc16 B OD1 ASN 93 B ASN 98 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc17 B O ILE 94 B ILE 99 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc18 B OE1 GLU 125 B GLU 130 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc19 B OE2 GLU 130 B GLU 135 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? metalc ? metalc20 B OD2 ASP 155 B ASP 160 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc21 B OD1 ASP 155 B ASP 160 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc22 B OD1 ASP 156 B ASP 161 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc23 B OE1 GLU 212 B GLU 217 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc24 B OE2 GLU 212 B GLU 217 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc25 B OD1 ASP 229 B ASP 234 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc26 B OD2 ASP 229 B ASP 234 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc27 G CA CA . B CA 301 1_555 M O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc28 H CA CA . B CA 302 1_555 J O21 C2E . B C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc29 H CA CA . B CA 302 1_555 M O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc30 I CA CA . B CA 303 1_555 J O11 C2E . B C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc31 I CA CA . B CA 303 1_555 J O5A C2E . B C2E 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc32 I CA CA . B CA 303 1_555 M O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc33 K CA CA . B CA 305 1_555 M O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc34 K CA CA . B CA 305 1_555 M O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc35 K CA CA . B CA 305 1_555 M O HOH . B HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc36 K CA CA . B CA 305 1_555 M O HOH . B HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MKG _atom_sites.fract_transf_matrix[1][1] 0.00891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 3 CA A 1 302 302 CA CA . E 3 CA A 1 303 303 CA CA . F 4 C2E A 1 304 304 C2E C2E . G 3 CA B 1 301 301 CA CA . H 3 CA B 1 302 302 CA CA . I 3 CA B 1 303 303 CA CA . J 4 C2E B 1 304 304 C2E C2E . K 3 CA B 1 305 1 CA CA . L 5 HOH A 1 401 42 HOH HOH . L 5 HOH A 2 402 99 HOH HOH . L 5 HOH A 3 403 115 HOH HOH . L 5 HOH A 4 404 13 HOH HOH . L 5 HOH A 5 405 8 HOH HOH . L 5 HOH A 6 406 2 HOH HOH . L 5 HOH A 7 407 107 HOH HOH . L 5 HOH A 8 408 4 HOH HOH . L 5 HOH A 9 409 53 HOH HOH . L 5 HOH A 10 410 41 HOH HOH . L 5 HOH A 11 411 70 HOH HOH . L 5 HOH A 12 412 46 HOH HOH . L 5 HOH A 13 413 16 HOH HOH . L 5 HOH A 14 414 140 HOH HOH . L 5 HOH A 15 415 95 HOH HOH . L 5 HOH A 16 416 3 HOH HOH . L 5 HOH A 17 417 34 HOH HOH . L 5 HOH A 18 418 28 HOH HOH . L 5 HOH A 19 419 174 HOH HOH . L 5 HOH A 20 420 101 HOH HOH . L 5 HOH A 21 421 76 HOH HOH . L 5 HOH A 22 422 21 HOH HOH . L 5 HOH A 23 423 131 HOH HOH . L 5 HOH A 24 424 30 HOH HOH . L 5 HOH A 25 425 58 HOH HOH . L 5 HOH A 26 426 15 HOH HOH . L 5 HOH A 27 427 33 HOH HOH . L 5 HOH A 28 428 96 HOH HOH . L 5 HOH A 29 429 182 HOH HOH . L 5 HOH A 30 430 60 HOH HOH . L 5 HOH A 31 431 184 HOH HOH . L 5 HOH A 32 432 66 HOH HOH . L 5 HOH A 33 433 122 HOH HOH . L 5 HOH A 34 434 7 HOH HOH . L 5 HOH A 35 435 172 HOH HOH . M 5 HOH B 1 401 123 HOH HOH . M 5 HOH B 2 402 185 HOH HOH . M 5 HOH B 3 403 52 HOH HOH . M 5 HOH B 4 404 77 HOH HOH . M 5 HOH B 5 405 6 HOH HOH . M 5 HOH B 6 406 25 HOH HOH . M 5 HOH B 7 407 45 HOH HOH . M 5 HOH B 8 408 37 HOH HOH . M 5 HOH B 9 409 68 HOH HOH . M 5 HOH B 10 410 181 HOH HOH . M 5 HOH B 11 411 1 HOH HOH . M 5 HOH B 12 412 112 HOH HOH . M 5 HOH B 13 413 24 HOH HOH . M 5 HOH B 14 414 43 HOH HOH . M 5 HOH B 15 415 119 HOH HOH . M 5 HOH B 16 416 54 HOH HOH . M 5 HOH B 17 417 124 HOH HOH . M 5 HOH B 18 418 12 HOH HOH . M 5 HOH B 19 419 9 HOH HOH . M 5 HOH B 20 420 59 HOH HOH . M 5 HOH B 21 421 163 HOH HOH . M 5 HOH B 22 422 22 HOH HOH . M 5 HOH B 23 423 5 HOH HOH . M 5 HOH B 24 424 180 HOH HOH . M 5 HOH B 25 425 57 HOH HOH . M 5 HOH B 26 426 26 HOH HOH . M 5 HOH B 27 427 23 HOH HOH . M 5 HOH B 28 428 49 HOH HOH . M 5 HOH B 29 429 179 HOH HOH . M 5 HOH B 30 430 188 HOH HOH . M 5 HOH B 31 431 178 HOH HOH . M 5 HOH B 32 432 175 HOH HOH . M 5 HOH B 33 433 29 HOH HOH . M 5 HOH B 34 434 136 HOH HOH . M 5 HOH B 35 435 177 HOH HOH . M 5 HOH B 36 436 176 HOH HOH . M 5 HOH B 37 437 89 HOH HOH . M 5 HOH B 38 438 14 HOH HOH . M 5 HOH B 39 439 18 HOH HOH . M 5 HOH B 40 440 173 HOH HOH . M 5 HOH B 41 441 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.398 _atom_site.Cartn_y -31.644 _atom_site.Cartn_z -19.531 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #