data_5MKJ # _model_server_result.job_id Dy6bFjFJJAKDIFBb8Blm4w _model_server_result.datetime_utc '2024-11-15 03:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5MKJ # _exptl.entry_id 5MKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(~{E})-3-[4-oxidanyl-3-(5-prop-2-enyl-2-propoxy-phenyl)phenyl]prop-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MKJ _cell.length_a 64.139 _cell.length_b 64.139 _cell.length_c 111.979 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 O4' _chem_comp.formula_weight 338.397 _chem_comp.id 4CU _chem_comp.mon_nstd_flag . _chem_comp.name '(~{E})-3-[4-oxidanyl-3-(5-prop-2-enyl-2-propoxy-phenyl)phenyl]prop-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 4CU doub 1 n n C17 C16 4CU sing 2 n n C16 C15 4CU sing 3 n n C15 C19 4CU doub 4 n y C15 C14 4CU sing 5 n y C19 C20 4CU sing 6 n y C14 C13 4CU doub 7 n y C20 C21 4CU doub 8 n y C13 C21 4CU sing 9 n y C13 C12 4CU sing 10 n n C21 O22 4CU sing 11 n n C11 C12 4CU doub 12 n y C11 C05 4CU sing 13 n y C12 C02 4CU sing 14 n y O09 C08 4CU doub 15 n n C06 C05 4CU sing 16 n n C06 C07 4CU doub 17 e n C08 C07 4CU sing 18 n n C08 O10 4CU sing 19 n n O22 C23 4CU sing 20 n n C05 C04 4CU doub 21 n y C23 C24 4CU sing 22 n n C02 O01 4CU sing 23 n n C02 C03 4CU doub 24 n y C04 C03 4CU sing 25 n y C24 C25 4CU sing 26 n n C11 H111 4CU sing 27 n n C14 H141 4CU sing 28 n n C17 H171 4CU sing 29 n n C20 H201 4CU sing 30 n n O01 H011 4CU sing 31 n n C03 H031 4CU sing 32 n n C04 H041 4CU sing 33 n n C06 H061 4CU sing 34 n n C07 H071 4CU sing 35 n n O10 H1 4CU sing 36 n n C16 H161 4CU sing 37 n n C16 H162 4CU sing 38 n n C18 H182 4CU sing 39 n n C18 H181 4CU sing 40 n n C19 H191 4CU sing 41 n n C23 H232 4CU sing 42 n n C23 H231 4CU sing 43 n n C24 H241 4CU sing 44 n n C24 H242 4CU sing 45 n n C25 H252 4CU sing 46 n n C25 H251 4CU sing 47 n n C25 H253 4CU sing 48 n n # _atom_sites.entry_id 5MKJ _atom_sites.fract_transf_matrix[1][1] 0.015591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4CU A 1 501 1 4CU 383 . D 4 HOH A 1 601 6 HOH HOH . D 4 HOH A 2 602 74 HOH HOH . D 4 HOH A 3 603 60 HOH HOH . D 4 HOH A 4 604 64 HOH HOH . D 4 HOH A 5 605 31 HOH HOH . D 4 HOH A 6 606 72 HOH HOH . D 4 HOH A 7 607 27 HOH HOH . D 4 HOH A 8 608 18 HOH HOH . D 4 HOH A 9 609 2 HOH HOH . D 4 HOH A 10 610 9 HOH HOH . D 4 HOH A 11 611 38 HOH HOH . D 4 HOH A 12 612 39 HOH HOH . D 4 HOH A 13 613 10 HOH HOH . D 4 HOH A 14 614 16 HOH HOH . D 4 HOH A 15 615 19 HOH HOH . D 4 HOH A 16 616 13 HOH HOH . D 4 HOH A 17 617 40 HOH HOH . D 4 HOH A 18 618 43 HOH HOH . D 4 HOH A 19 619 49 HOH HOH . D 4 HOH A 20 620 63 HOH HOH . D 4 HOH A 21 621 34 HOH HOH . D 4 HOH A 22 622 26 HOH HOH . D 4 HOH A 23 623 17 HOH HOH . D 4 HOH A 24 624 15 HOH HOH . D 4 HOH A 25 625 22 HOH HOH . D 4 HOH A 26 626 5 HOH HOH . D 4 HOH A 27 627 7 HOH HOH . D 4 HOH A 28 628 36 HOH HOH . D 4 HOH A 29 629 4 HOH HOH . D 4 HOH A 30 630 45 HOH HOH . D 4 HOH A 31 631 8 HOH HOH . D 4 HOH A 32 632 62 HOH HOH . D 4 HOH A 33 633 1 HOH HOH . D 4 HOH A 34 634 29 HOH HOH . D 4 HOH A 35 635 54 HOH HOH . D 4 HOH A 36 636 11 HOH HOH . D 4 HOH A 37 637 35 HOH HOH . D 4 HOH A 38 638 32 HOH HOH . D 4 HOH A 39 639 42 HOH HOH . D 4 HOH A 40 640 44 HOH HOH . D 4 HOH A 41 641 24 HOH HOH . D 4 HOH A 42 642 20 HOH HOH . D 4 HOH A 43 643 14 HOH HOH . D 4 HOH A 44 644 23 HOH HOH . D 4 HOH A 45 645 61 HOH HOH . D 4 HOH A 46 646 58 HOH HOH . D 4 HOH A 47 647 3 HOH HOH . D 4 HOH A 48 648 41 HOH HOH . D 4 HOH A 49 649 21 HOH HOH . D 4 HOH A 50 650 28 HOH HOH . D 4 HOH A 51 651 69 HOH HOH . D 4 HOH A 52 652 70 HOH HOH . D 4 HOH A 53 653 25 HOH HOH . D 4 HOH A 54 654 52 HOH HOH . D 4 HOH A 55 655 56 HOH HOH . D 4 HOH A 56 656 30 HOH HOH . D 4 HOH A 57 657 46 HOH HOH . D 4 HOH A 58 658 71 HOH HOH . D 4 HOH A 59 659 57 HOH HOH . D 4 HOH A 60 660 33 HOH HOH . D 4 HOH A 61 661 76 HOH HOH . D 4 HOH A 62 662 37 HOH HOH . D 4 HOH A 63 663 47 HOH HOH . D 4 HOH A 64 664 51 HOH HOH . E 4 HOH B 1 501 53 HOH HOH . E 4 HOH B 2 502 73 HOH HOH . E 4 HOH B 3 503 48 HOH HOH . E 4 HOH B 4 504 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 4CU . . . C 3 2.947 -17.894 -2.397 1 46.15 ? C12 4CU 501 A 1 HETATM 2 C C11 4CU . . . C 3 4.191 -18.48 -2.593 1 45.71 ? C11 4CU 501 A 1 HETATM 3 C C14 4CU . . . C 3 2.109 -17.812 -4.787 1 47.01 ? C14 4CU 501 A 1 HETATM 4 C C15 4CU . . . C 3 1.105 -17.949 -5.734 1 45.46 ? C15 4CU 501 A 1 HETATM 5 C C17 4CU . . . C 3 1.946 -16.287 -7.459 1 42.46 ? C17 4CU 501 A 1 HETATM 6 C C20 4CU . . . C 3 -0.445 -18.561 -4.012 1 48.41 ? C20 4CU 501 A 1 HETATM 7 C C21 4CU . . . C 3 0.559 -18.427 -3.063 1 52.24 ? C21 4CU 501 A 1 HETATM 8 O O22 4CU . . . C 3 0.282 -18.663 -1.709 1 55.06 ? O22 4CU 501 A 1 HETATM 9 O O01 4CU . . . C 3 1.468 -16.558 -1.028 1 41.53 ? O01 4CU 501 A 1 HETATM 10 C C02 4CU . . . C 3 2.715 -17.157 -1.244 1 43.17 ? C02 4CU 501 A 1 HETATM 11 C C03 4CU . . . C 3 3.711 -17.014 -0.294 1 44.76 ? C03 4CU 501 A 1 HETATM 12 C C04 4CU . . . C 3 4.948 -17.602 -0.491 1 43.95 ? C04 4CU 501 A 1 HETATM 13 C C05 4CU . . . C 3 5.191 -18.334 -1.641 1 43.35 ? C05 4CU 501 A 1 HETATM 14 C C06 4CU . . . C 3 6.564 -18.977 -1.846 1 40.25 ? C06 4CU 501 A 1 HETATM 15 C C07 4CU . . . C 3 7.656 -18.284 -1.588 1 39.52 ? C07 4CU 501 A 1 HETATM 16 C C08 4CU . . . C 3 9.039 -18.902 -1.785 1 41.7 ? C08 4CU 501 A 1 HETATM 17 O O09 4CU . . . C 3 9.162 -20.023 -2.342 1 46.06 ? O09 4CU 501 A 1 HETATM 18 O O10 4CU . . . C 3 10.062 -18.281 -1.394 1 41.23 ? O10 4CU 501 A 1 HETATM 19 C C13 4CU . . . C 3 1.84 -18.05 -3.447 1 50.06 ? C13 4CU 501 A 1 HETATM 20 C C16 4CU . . . C 3 1.402 -17.692 -7.209 1 42.56 ? C16 4CU 501 A 1 HETATM 21 C C18 4CU . . . C 3 3.055 -16.12 -8.147 1 42.05 ? C18 4CU 501 A 1 HETATM 22 C C19 4CU . . . C 3 -0.171 -18.325 -5.348 1 45.8 ? C19 4CU 501 A 1 HETATM 23 C C23 4CU . . . C 3 -0.216 -19.937 -1.41 1 56.76 ? C23 4CU 501 A 1 HETATM 24 C C24 4CU . . . C 3 0.635 -20.513 -0.281 1 60.38 ? C24 4CU 501 A 1 HETATM 25 C C25 4CU . . . C 3 0.846 -19.509 0.849 1 62.32 ? C25 4CU 501 A 1 HETATM 26 H H111 4CU . . . C 3 4.355 -18.973 -3.364 1 54.85 ? H111 4CU 501 A 1 HETATM 27 H H141 4CU . . . C 3 2.965 -17.56 -5.051 1 56.41 ? H141 4CU 501 A 1 HETATM 28 H H171 4CU . . . C 3 1.492 -15.547 -7.124 1 50.95 ? H171 4CU 501 A 1 HETATM 29 H H201 4CU . . . C 3 -1.301 -18.814 -3.75 1 58.09 ? H201 4CU 501 A 1 HETATM 30 H H011 4CU . . . C 3 1.506 -15.738 -1.249 1 49.84 ? H011 4CU 501 A 1 HETATM 31 H H031 4CU . . . C 3 3.55 -16.522 0.478 1 53.71 ? H031 4CU 501 A 1 HETATM 32 H H041 4CU . . . C 3 5.617 -17.503 0.147 1 52.74 ? H041 4CU 501 A 1 HETATM 33 H H061 4CU . . . C 3 6.628 -19.853 -2.152 1 48.29 ? H061 4CU 501 A 1 HETATM 34 H H071 4CU . . . C 3 7.583 -17.409 -1.282 1 47.42 ? H071 4CU 501 A 1 HETATM 35 H H161 4CU . . . C 3 2.057 -18.339 -7.515 1 51.07 ? H161 4CU 501 A 1 HETATM 36 H H162 4CU . . . C 3 0.585 -17.807 -7.719 1 51.07 ? H162 4CU 501 A 1 HETATM 37 H H182 4CU . . . C 3 3.51 -16.859 -8.482 1 50.46 ? H182 4CU 501 A 1 HETATM 38 H H181 4CU . . . C 3 3.385 -15.264 -8.298 1 50.46 ? H181 4CU 501 A 1 HETATM 39 H H191 4CU . . . C 3 -0.842 -18.418 -5.984 1 54.96 ? H191 4CU 501 A 1 HETATM 40 H H232 4CU . . . C 3 -0.154 -20.507 -2.192 1 68.12 ? H232 4CU 501 A 1 HETATM 41 H H231 4CU . . . C 3 -1.14 -19.87 -1.124 1 68.12 ? H231 4CU 501 A 1 HETATM 42 H H241 4CU . . . C 3 1.499 -20.77 -0.638 1 72.45 ? H241 4CU 501 A 1 HETATM 43 H H242 4CU . . . C 3 0.194 -21.3 0.076 1 72.45 ? H242 4CU 501 A 1 HETATM 44 H H252 4CU . . . C 3 1.34 -18.744 0.514 1 74.78 ? H252 4CU 501 A 1 HETATM 45 H H251 4CU . . . C 3 1.347 -19.929 1.566 1 74.78 ? H251 4CU 501 A 1 HETATM 46 H H253 4CU . . . C 3 -0.015 -19.215 1.186 1 74.78 ? H253 4CU 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 46 #