data_5MKO # _model_server_result.job_id RAN2j8xSgrAyP0qMcDMSFQ _model_server_result.datetime_utc '2024-10-19 10:32:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 5MKO # _exptl.entry_id 5MKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MKO _cell.length_a 68.86 _cell.length_b 72.32 _cell.length_c 128.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 6 A CYS 3 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 A SG CYS 9 A CYS 6 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A SG CYS 25 A CYS 22 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 A ND1 HIS 28 A HIS 25 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc5 A SG CYS 131 A CYS 128 1_555 F FE1 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc6 A SG CYS 134 A CYS 131 1_555 F FE2 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc7 A SG CYS 223 A CYS 220 1_555 F FE1 FES . A FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc8 A SG CYS 275 A CYS 272 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc9 A SG CYS 278 A CYS 275 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc10 A SG CYS 287 A CYS 284 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 A SG CYS 290 A CYS 287 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc12 B SG CYS 6 B CYS 3 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc13 B SG CYS 9 B CYS 6 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc14 B SG CYS 25 B CYS 22 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc15 B ND1 HIS 28 B HIS 25 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc16 B SG CYS 131 B CYS 128 1_555 J FE1 FES . B FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc17 B SG CYS 134 B CYS 131 1_555 J FE2 FES . B FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc18 B SG CYS 223 B CYS 220 1_555 J FE1 FES . B FES 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc19 B SG CYS 275 B CYS 272 1_555 I ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc20 B SG CYS 278 B CYS 275 1_555 I ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc21 B SG CYS 287 B CYS 284 1_555 I ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc22 B SG CYS 290 B CYS 287 1_555 I ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5MKO _atom_sites.fract_transf_matrix[1][1] 0.014522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 401 1 AMP AMP . D 3 ZN A 1 402 1 ZN ZN . E 3 ZN A 1 403 2 ZN ZN . F 4 FES A 1 404 1 FES FES . G 2 AMP B 1 401 2 AMP AMP . H 3 ZN B 1 402 3 ZN ZN . I 3 ZN B 1 403 4 ZN ZN . J 4 FES B 1 404 2 FES FES . K 5 HOH A 1 501 84 HOH HOH . K 5 HOH A 2 502 50 HOH HOH . K 5 HOH A 3 503 18 HOH HOH . K 5 HOH A 4 504 39 HOH HOH . K 5 HOH A 5 505 114 HOH HOH . K 5 HOH A 6 506 112 HOH HOH . K 5 HOH A 7 507 121 HOH HOH . K 5 HOH A 8 508 78 HOH HOH . K 5 HOH A 9 509 113 HOH HOH . K 5 HOH A 10 510 41 HOH HOH . K 5 HOH A 11 511 131 HOH HOH . K 5 HOH A 12 512 130 HOH HOH . K 5 HOH A 13 513 45 HOH HOH . K 5 HOH A 14 514 109 HOH HOH . K 5 HOH A 15 515 111 HOH HOH . K 5 HOH A 16 516 8 HOH HOH . K 5 HOH A 17 517 4 HOH HOH . L 5 HOH B 1 501 94 HOH HOH . L 5 HOH B 2 502 115 HOH HOH . L 5 HOH B 3 503 86 HOH HOH . L 5 HOH B 4 504 108 HOH HOH . L 5 HOH B 5 505 96 HOH HOH . L 5 HOH B 6 506 103 HOH HOH . L 5 HOH B 7 507 69 HOH HOH . L 5 HOH B 8 508 87 HOH HOH . L 5 HOH B 9 509 89 HOH HOH . L 5 HOH B 10 510 107 HOH HOH . L 5 HOH B 11 511 88 HOH HOH . L 5 HOH B 12 512 97 HOH HOH . L 5 HOH B 13 513 98 HOH HOH . L 5 HOH B 14 514 118 HOH HOH . L 5 HOH B 15 515 83 HOH HOH . L 5 HOH B 16 516 127 HOH HOH . L 5 HOH B 17 517 91 HOH HOH . L 5 HOH B 18 518 93 HOH HOH . L 5 HOH B 19 519 100 HOH HOH . L 5 HOH B 20 520 120 HOH HOH . L 5 HOH B 21 521 81 HOH HOH . L 5 HOH B 22 522 128 HOH HOH . L 5 HOH B 23 523 90 HOH HOH . L 5 HOH B 24 524 122 HOH HOH . L 5 HOH B 25 525 123 HOH HOH . L 5 HOH B 26 526 82 HOH HOH . L 5 HOH B 27 527 62 HOH HOH . L 5 HOH B 28 528 126 HOH HOH . L 5 HOH B 29 529 92 HOH HOH . L 5 HOH B 30 530 129 HOH HOH . L 5 HOH B 31 531 119 HOH HOH . L 5 HOH B 32 532 116 HOH HOH . L 5 HOH B 33 533 102 HOH HOH . L 5 HOH B 34 534 117 HOH HOH . L 5 HOH B 35 535 104 HOH HOH . L 5 HOH B 36 536 2 HOH HOH . L 5 HOH B 37 537 101 HOH HOH . L 5 HOH B 38 538 14 HOH HOH . L 5 HOH B 39 539 95 HOH HOH . L 5 HOH B 40 540 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.819 _atom_site.Cartn_y 25.456 _atom_site.Cartn_z 43.281 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 98.67 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 119 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #