data_5MKW # _model_server_result.job_id 4Jh_5pTLCyrtesalQLUHRg _model_server_result.datetime_utc '2024-12-22 06:09:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5MKW # _exptl.entry_id 5MKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MKW _cell.length_a 56.841 _cell.length_b 67.552 _cell.length_c 92.161 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 20 A CYS 20 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A SG CYS 23 A CYS 23 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A SG CYS 96 A CYS 96 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A SG CYS 99 A CYS 99 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 B SG CYS 20 B CYS 20 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 B SG CYS 23 B CYS 23 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 B SG CYS 96 B CYS 96 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc8 B SG CYS 99 B CYS 99 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5MKW _atom_sites.fract_transf_matrix[1][1] 0.017593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 201 ZN ZN . D 3 GOL A 1 202 1 GOL GOL . E 3 GOL A 1 203 2 GOL GOL . F 2 ZN B 1 201 201 ZN ZN . G 3 GOL B 1 202 3 GOL GOL . H 3 GOL B 1 203 4 GOL GOL . I 4 HOH A 1 301 139 HOH HOH . I 4 HOH A 2 302 231 HOH HOH . I 4 HOH A 3 303 27 HOH HOH . I 4 HOH A 4 304 115 HOH HOH . I 4 HOH A 5 305 213 HOH HOH . I 4 HOH A 6 306 70 HOH HOH . I 4 HOH A 7 307 63 HOH HOH . I 4 HOH A 8 308 32 HOH HOH . I 4 HOH A 9 309 180 HOH HOH . I 4 HOH A 10 310 128 HOH HOH . I 4 HOH A 11 311 189 HOH HOH . I 4 HOH A 12 312 217 HOH HOH . I 4 HOH A 13 313 92 HOH HOH . I 4 HOH A 14 314 58 HOH HOH . I 4 HOH A 15 315 84 HOH HOH . I 4 HOH A 16 316 203 HOH HOH . I 4 HOH A 17 317 83 HOH HOH . I 4 HOH A 18 318 175 HOH HOH . I 4 HOH A 19 319 171 HOH HOH . I 4 HOH A 20 320 36 HOH HOH . I 4 HOH A 21 321 204 HOH HOH . I 4 HOH A 22 322 205 HOH HOH . I 4 HOH A 23 323 41 HOH HOH . I 4 HOH A 24 324 43 HOH HOH . I 4 HOH A 25 325 77 HOH HOH . I 4 HOH A 26 326 152 HOH HOH . I 4 HOH A 27 327 46 HOH HOH . I 4 HOH A 28 328 137 HOH HOH . I 4 HOH A 29 329 159 HOH HOH . I 4 HOH A 30 330 18 HOH HOH . I 4 HOH A 31 331 24 HOH HOH . I 4 HOH A 32 332 7 HOH HOH . I 4 HOH A 33 333 61 HOH HOH . I 4 HOH A 34 334 50 HOH HOH . I 4 HOH A 35 335 184 HOH HOH . I 4 HOH A 36 336 93 HOH HOH . I 4 HOH A 37 337 104 HOH HOH . I 4 HOH A 38 338 185 HOH HOH . I 4 HOH A 39 339 16 HOH HOH . I 4 HOH A 40 340 34 HOH HOH . I 4 HOH A 41 341 98 HOH HOH . I 4 HOH A 42 342 114 HOH HOH . I 4 HOH A 43 343 59 HOH HOH . I 4 HOH A 44 344 53 HOH HOH . I 4 HOH A 45 345 54 HOH HOH . I 4 HOH A 46 346 188 HOH HOH . I 4 HOH A 47 347 19 HOH HOH . I 4 HOH A 48 348 173 HOH HOH . I 4 HOH A 49 349 111 HOH HOH . I 4 HOH A 50 350 22 HOH HOH . I 4 HOH A 51 351 186 HOH HOH . I 4 HOH A 52 352 5 HOH HOH . I 4 HOH A 53 353 91 HOH HOH . I 4 HOH A 54 354 148 HOH HOH . I 4 HOH A 55 355 79 HOH HOH . I 4 HOH A 56 356 87 HOH HOH . I 4 HOH A 57 357 95 HOH HOH . I 4 HOH A 58 358 106 HOH HOH . I 4 HOH A 59 359 183 HOH HOH . I 4 HOH A 60 360 42 HOH HOH . I 4 HOH A 61 361 64 HOH HOH . I 4 HOH A 62 362 15 HOH HOH . I 4 HOH A 63 363 107 HOH HOH . I 4 HOH A 64 364 49 HOH HOH . I 4 HOH A 65 365 178 HOH HOH . I 4 HOH A 66 366 12 HOH HOH . I 4 HOH A 67 367 40 HOH HOH . I 4 HOH A 68 368 65 HOH HOH . I 4 HOH A 69 369 90 HOH HOH . I 4 HOH A 70 370 20 HOH HOH . I 4 HOH A 71 371 143 HOH HOH . I 4 HOH A 72 372 176 HOH HOH . I 4 HOH A 73 373 157 HOH HOH . I 4 HOH A 74 374 151 HOH HOH . I 4 HOH A 75 375 131 HOH HOH . I 4 HOH A 76 376 126 HOH HOH . I 4 HOH A 77 377 88 HOH HOH . I 4 HOH A 78 378 190 HOH HOH . I 4 HOH A 79 379 154 HOH HOH . I 4 HOH A 80 380 224 HOH HOH . I 4 HOH A 81 381 145 HOH HOH . I 4 HOH A 82 382 153 HOH HOH . I 4 HOH A 83 383 172 HOH HOH . I 4 HOH A 84 384 165 HOH HOH . I 4 HOH A 85 385 169 HOH HOH . I 4 HOH A 86 386 28 HOH HOH . I 4 HOH A 87 387 85 HOH HOH . I 4 HOH A 88 388 202 HOH HOH . I 4 HOH A 89 389 187 HOH HOH . I 4 HOH A 90 390 168 HOH HOH . I 4 HOH A 91 391 181 HOH HOH . I 4 HOH A 92 392 155 HOH HOH . I 4 HOH A 93 393 208 HOH HOH . I 4 HOH A 94 394 103 HOH HOH . I 4 HOH A 95 395 136 HOH HOH . I 4 HOH A 96 396 206 HOH HOH . I 4 HOH A 97 397 130 HOH HOH . I 4 HOH A 98 398 133 HOH HOH . I 4 HOH A 99 399 221 HOH HOH . I 4 HOH A 100 400 101 HOH HOH . I 4 HOH A 101 401 212 HOH HOH . I 4 HOH A 102 402 200 HOH HOH . I 4 HOH A 103 403 134 HOH HOH . I 4 HOH A 104 404 201 HOH HOH . I 4 HOH A 105 405 105 HOH HOH . I 4 HOH A 106 406 75 HOH HOH . I 4 HOH A 107 407 60 HOH HOH . I 4 HOH A 108 408 177 HOH HOH . I 4 HOH A 109 409 220 HOH HOH . I 4 HOH A 110 410 211 HOH HOH . I 4 HOH A 111 411 112 HOH HOH . I 4 HOH A 112 412 218 HOH HOH . I 4 HOH A 113 413 219 HOH HOH . J 4 HOH B 1 301 72 HOH HOH . J 4 HOH B 2 302 48 HOH HOH . J 4 HOH B 3 303 174 HOH HOH . J 4 HOH B 4 304 196 HOH HOH . J 4 HOH B 5 305 182 HOH HOH . J 4 HOH B 6 306 23 HOH HOH . J 4 HOH B 7 307 162 HOH HOH . J 4 HOH B 8 308 25 HOH HOH . J 4 HOH B 9 309 146 HOH HOH . J 4 HOH B 10 310 89 HOH HOH . J 4 HOH B 11 311 164 HOH HOH . J 4 HOH B 12 312 124 HOH HOH . J 4 HOH B 13 313 51 HOH HOH . J 4 HOH B 14 314 150 HOH HOH . J 4 HOH B 15 315 10 HOH HOH . J 4 HOH B 16 316 110 HOH HOH . J 4 HOH B 17 317 17 HOH HOH . J 4 HOH B 18 318 57 HOH HOH . J 4 HOH B 19 319 197 HOH HOH . J 4 HOH B 20 320 31 HOH HOH . J 4 HOH B 21 321 44 HOH HOH . J 4 HOH B 22 322 66 HOH HOH . J 4 HOH B 23 323 71 HOH HOH . J 4 HOH B 24 324 6 HOH HOH . J 4 HOH B 25 325 142 HOH HOH . J 4 HOH B 26 326 9 HOH HOH . J 4 HOH B 27 327 21 HOH HOH . J 4 HOH B 28 328 47 HOH HOH . J 4 HOH B 29 329 116 HOH HOH . J 4 HOH B 30 330 2 HOH HOH . J 4 HOH B 31 331 76 HOH HOH . J 4 HOH B 32 332 163 HOH HOH . J 4 HOH B 33 333 35 HOH HOH . J 4 HOH B 34 334 127 HOH HOH . J 4 HOH B 35 335 170 HOH HOH . J 4 HOH B 36 336 166 HOH HOH . J 4 HOH B 37 337 45 HOH HOH . J 4 HOH B 38 338 52 HOH HOH . J 4 HOH B 39 339 62 HOH HOH . J 4 HOH B 40 340 29 HOH HOH . J 4 HOH B 41 341 39 HOH HOH . J 4 HOH B 42 342 73 HOH HOH . J 4 HOH B 43 343 26 HOH HOH . J 4 HOH B 44 344 215 HOH HOH . J 4 HOH B 45 345 230 HOH HOH . J 4 HOH B 46 346 141 HOH HOH . J 4 HOH B 47 347 120 HOH HOH . J 4 HOH B 48 348 144 HOH HOH . J 4 HOH B 49 349 1 HOH HOH . J 4 HOH B 50 350 135 HOH HOH . J 4 HOH B 51 351 4 HOH HOH . J 4 HOH B 52 352 69 HOH HOH . J 4 HOH B 53 353 99 HOH HOH . J 4 HOH B 54 354 100 HOH HOH . J 4 HOH B 55 355 161 HOH HOH . J 4 HOH B 56 356 33 HOH HOH . J 4 HOH B 57 357 81 HOH HOH . J 4 HOH B 58 358 55 HOH HOH . J 4 HOH B 59 359 140 HOH HOH . J 4 HOH B 60 360 8 HOH HOH . J 4 HOH B 61 361 14 HOH HOH . J 4 HOH B 62 362 74 HOH HOH . J 4 HOH B 63 363 13 HOH HOH . J 4 HOH B 64 364 160 HOH HOH . J 4 HOH B 65 365 11 HOH HOH . J 4 HOH B 66 366 117 HOH HOH . J 4 HOH B 67 367 86 HOH HOH . J 4 HOH B 68 368 82 HOH HOH . J 4 HOH B 69 369 94 HOH HOH . J 4 HOH B 70 370 156 HOH HOH . J 4 HOH B 71 371 78 HOH HOH . J 4 HOH B 72 372 80 HOH HOH . J 4 HOH B 73 373 3 HOH HOH . J 4 HOH B 74 374 122 HOH HOH . J 4 HOH B 75 375 67 HOH HOH . J 4 HOH B 76 376 195 HOH HOH . J 4 HOH B 77 377 227 HOH HOH . J 4 HOH B 78 378 149 HOH HOH . J 4 HOH B 79 379 138 HOH HOH . J 4 HOH B 80 380 108 HOH HOH . J 4 HOH B 81 381 214 HOH HOH . J 4 HOH B 82 382 96 HOH HOH . J 4 HOH B 83 383 56 HOH HOH . J 4 HOH B 84 384 132 HOH HOH . J 4 HOH B 85 385 194 HOH HOH . J 4 HOH B 86 386 167 HOH HOH . J 4 HOH B 87 387 102 HOH HOH . J 4 HOH B 88 388 97 HOH HOH . J 4 HOH B 89 389 37 HOH HOH . J 4 HOH B 90 390 147 HOH HOH . J 4 HOH B 91 391 121 HOH HOH . J 4 HOH B 92 392 158 HOH HOH . J 4 HOH B 93 393 223 HOH HOH . J 4 HOH B 94 394 30 HOH HOH . J 4 HOH B 95 395 123 HOH HOH . J 4 HOH B 96 396 199 HOH HOH . J 4 HOH B 97 397 179 HOH HOH . J 4 HOH B 98 398 118 HOH HOH . J 4 HOH B 99 399 216 HOH HOH . J 4 HOH B 100 400 228 HOH HOH . J 4 HOH B 101 401 119 HOH HOH . J 4 HOH B 102 402 229 HOH HOH . J 4 HOH B 103 403 68 HOH HOH . J 4 HOH B 104 404 125 HOH HOH . J 4 HOH B 105 405 193 HOH HOH . J 4 HOH B 106 406 207 HOH HOH . J 4 HOH B 107 407 210 HOH HOH . J 4 HOH B 108 408 38 HOH HOH . J 4 HOH B 109 409 109 HOH HOH . J 4 HOH B 110 410 191 HOH HOH . J 4 HOH B 111 411 192 HOH HOH . J 4 HOH B 112 412 222 HOH HOH . J 4 HOH B 113 413 209 HOH HOH . J 4 HOH B 114 414 113 HOH HOH . J 4 HOH B 115 415 129 HOH HOH . J 4 HOH B 116 416 198 HOH HOH . J 4 HOH B 117 417 226 HOH HOH . J 4 HOH B 118 418 232 HOH HOH . J 4 HOH B 119 419 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -10.621 -2.036 -3.228 1 48.7 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 -9.515 -2.5 -2.45 1 36.37 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 -10.779 -0.519 -3.116 1 49.08 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 -9.727 0.109 -3.849 1 55.1 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 -12.121 -0.057 -3.669 1 53.61 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 -12.74 0.843 -2.742 1 56.67 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #