data_5MKZ # _model_server_result.job_id VT0IEc5T1SGXKF6VYxHBlA _model_server_result.datetime_utc '2024-10-19 03:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5MKZ # _exptl.entry_id 5MKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MKZ _cell.length_a 37.594 _cell.length_b 44.238 _cell.length_c 77.726 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5MKZ _atom_sites.fract_transf_matrix[1][1] 0.0266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RNK A 1 201 1 RNK LIG . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 3 GOL A 1 204 3 GOL GOL . F 4 HOH A 1 301 191 HOH HOH . F 4 HOH A 2 302 257 HOH HOH . F 4 HOH A 3 303 169 HOH HOH . F 4 HOH A 4 304 241 HOH HOH . F 4 HOH A 5 305 91 HOH HOH . F 4 HOH A 6 306 208 HOH HOH . F 4 HOH A 7 307 155 HOH HOH . F 4 HOH A 8 308 198 HOH HOH . F 4 HOH A 9 309 72 HOH HOH . F 4 HOH A 10 310 173 HOH HOH . F 4 HOH A 11 311 84 HOH HOH . F 4 HOH A 12 312 25 HOH HOH . F 4 HOH A 13 313 118 HOH HOH . F 4 HOH A 14 314 73 HOH HOH . F 4 HOH A 15 315 217 HOH HOH . F 4 HOH A 16 316 200 HOH HOH . F 4 HOH A 17 317 85 HOH HOH . F 4 HOH A 18 318 39 HOH HOH . F 4 HOH A 19 319 214 HOH HOH . F 4 HOH A 20 320 59 HOH HOH . F 4 HOH A 21 321 50 HOH HOH . F 4 HOH A 22 322 24 HOH HOH . F 4 HOH A 23 323 287 HOH HOH . F 4 HOH A 24 324 102 HOH HOH . F 4 HOH A 25 325 81 HOH HOH . F 4 HOH A 26 326 167 HOH HOH . F 4 HOH A 27 327 34 HOH HOH . F 4 HOH A 28 328 29 HOH HOH . F 4 HOH A 29 329 126 HOH HOH . F 4 HOH A 30 330 57 HOH HOH . F 4 HOH A 31 331 154 HOH HOH . F 4 HOH A 32 332 248 HOH HOH . F 4 HOH A 33 333 114 HOH HOH . F 4 HOH A 34 334 226 HOH HOH . F 4 HOH A 35 335 151 HOH HOH . F 4 HOH A 36 336 236 HOH HOH . F 4 HOH A 37 337 58 HOH HOH . F 4 HOH A 38 338 221 HOH HOH . F 4 HOH A 39 339 37 HOH HOH . F 4 HOH A 40 340 255 HOH HOH . F 4 HOH A 41 341 22 HOH HOH . F 4 HOH A 42 342 33 HOH HOH . F 4 HOH A 43 343 253 HOH HOH . F 4 HOH A 44 344 209 HOH HOH . F 4 HOH A 45 345 187 HOH HOH . F 4 HOH A 46 346 44 HOH HOH . F 4 HOH A 47 347 235 HOH HOH . F 4 HOH A 48 348 12 HOH HOH . F 4 HOH A 49 349 31 HOH HOH . F 4 HOH A 50 350 289 HOH HOH . F 4 HOH A 51 351 121 HOH HOH . F 4 HOH A 52 352 83 HOH HOH . F 4 HOH A 53 353 130 HOH HOH . F 4 HOH A 54 354 242 HOH HOH . F 4 HOH A 55 355 32 HOH HOH . F 4 HOH A 56 356 135 HOH HOH . F 4 HOH A 57 357 40 HOH HOH . F 4 HOH A 58 358 13 HOH HOH . F 4 HOH A 59 359 62 HOH HOH . F 4 HOH A 60 360 105 HOH HOH . F 4 HOH A 61 361 41 HOH HOH . F 4 HOH A 62 362 43 HOH HOH . F 4 HOH A 63 363 288 HOH HOH . F 4 HOH A 64 364 227 HOH HOH . F 4 HOH A 65 365 4 HOH HOH . F 4 HOH A 66 366 260 HOH HOH . F 4 HOH A 67 367 46 HOH HOH . F 4 HOH A 68 368 52 HOH HOH . F 4 HOH A 69 369 10 HOH HOH . F 4 HOH A 70 370 245 HOH HOH . F 4 HOH A 71 371 170 HOH HOH . F 4 HOH A 72 372 26 HOH HOH . F 4 HOH A 73 373 1 HOH HOH . F 4 HOH A 74 374 15 HOH HOH . F 4 HOH A 75 375 88 HOH HOH . F 4 HOH A 76 376 87 HOH HOH . F 4 HOH A 77 377 90 HOH HOH . F 4 HOH A 78 378 265 HOH HOH . F 4 HOH A 79 379 98 HOH HOH . F 4 HOH A 80 380 7 HOH HOH . F 4 HOH A 81 381 71 HOH HOH . F 4 HOH A 82 382 70 HOH HOH . F 4 HOH A 83 383 27 HOH HOH . F 4 HOH A 84 384 5 HOH HOH . F 4 HOH A 85 385 266 HOH HOH . F 4 HOH A 86 386 36 HOH HOH . F 4 HOH A 87 387 53 HOH HOH . F 4 HOH A 88 388 156 HOH HOH . F 4 HOH A 89 389 75 HOH HOH . F 4 HOH A 90 390 162 HOH HOH . F 4 HOH A 91 391 106 HOH HOH . F 4 HOH A 92 392 93 HOH HOH . F 4 HOH A 93 393 9 HOH HOH . F 4 HOH A 94 394 120 HOH HOH . F 4 HOH A 95 395 68 HOH HOH . F 4 HOH A 96 396 65 HOH HOH . F 4 HOH A 97 397 19 HOH HOH . F 4 HOH A 98 398 129 HOH HOH . F 4 HOH A 99 399 122 HOH HOH . F 4 HOH A 100 400 55 HOH HOH . F 4 HOH A 101 401 76 HOH HOH . F 4 HOH A 102 402 2 HOH HOH . F 4 HOH A 103 403 18 HOH HOH . F 4 HOH A 104 404 216 HOH HOH . F 4 HOH A 105 405 192 HOH HOH . F 4 HOH A 106 406 139 HOH HOH . F 4 HOH A 107 407 196 HOH HOH . F 4 HOH A 108 408 45 HOH HOH . F 4 HOH A 109 409 233 HOH HOH . F 4 HOH A 110 410 101 HOH HOH . F 4 HOH A 111 411 213 HOH HOH . F 4 HOH A 112 412 195 HOH HOH . F 4 HOH A 113 413 237 HOH HOH . F 4 HOH A 114 414 215 HOH HOH . F 4 HOH A 115 415 190 HOH HOH . F 4 HOH A 116 416 247 HOH HOH . F 4 HOH A 117 417 220 HOH HOH . F 4 HOH A 118 418 30 HOH HOH . F 4 HOH A 119 419 89 HOH HOH . F 4 HOH A 120 420 194 HOH HOH . F 4 HOH A 121 421 64 HOH HOH . F 4 HOH A 122 422 3 HOH HOH . F 4 HOH A 123 423 219 HOH HOH . F 4 HOH A 124 424 108 HOH HOH . F 4 HOH A 125 425 276 HOH HOH . F 4 HOH A 126 426 228 HOH HOH . F 4 HOH A 127 427 234 HOH HOH . F 4 HOH A 128 428 86 HOH HOH . F 4 HOH A 129 429 82 HOH HOH . F 4 HOH A 130 430 17 HOH HOH . F 4 HOH A 131 431 193 HOH HOH . F 4 HOH A 132 432 28 HOH HOH . F 4 HOH A 133 433 63 HOH HOH . F 4 HOH A 134 434 132 HOH HOH . F 4 HOH A 135 435 285 HOH HOH . F 4 HOH A 136 436 94 HOH HOH . F 4 HOH A 137 437 8 HOH HOH . F 4 HOH A 138 438 20 HOH HOH . F 4 HOH A 139 439 56 HOH HOH . F 4 HOH A 140 440 23 HOH HOH . F 4 HOH A 141 441 51 HOH HOH . F 4 HOH A 142 442 197 HOH HOH . F 4 HOH A 143 443 272 HOH HOH . F 4 HOH A 144 444 210 HOH HOH . F 4 HOH A 145 445 11 HOH HOH . F 4 HOH A 146 446 212 HOH HOH . F 4 HOH A 147 447 47 HOH HOH . F 4 HOH A 148 448 211 HOH HOH . F 4 HOH A 149 449 61 HOH HOH . F 4 HOH A 150 450 6 HOH HOH . F 4 HOH A 151 451 77 HOH HOH . F 4 HOH A 152 452 111 HOH HOH . F 4 HOH A 153 453 165 HOH HOH . F 4 HOH A 154 454 251 HOH HOH . F 4 HOH A 155 455 290 HOH HOH . F 4 HOH A 156 456 271 HOH HOH . F 4 HOH A 157 457 243 HOH HOH . F 4 HOH A 158 458 16 HOH HOH . F 4 HOH A 159 459 38 HOH HOH . F 4 HOH A 160 460 113 HOH HOH . F 4 HOH A 161 461 229 HOH HOH . F 4 HOH A 162 462 258 HOH HOH . F 4 HOH A 163 463 14 HOH HOH . F 4 HOH A 164 464 179 HOH HOH . F 4 HOH A 165 465 278 HOH HOH . F 4 HOH A 166 466 275 HOH HOH . F 4 HOH A 167 467 131 HOH HOH . F 4 HOH A 168 468 42 HOH HOH . F 4 HOH A 169 469 259 HOH HOH . F 4 HOH A 170 470 163 HOH HOH . F 4 HOH A 171 471 223 HOH HOH . F 4 HOH A 172 472 80 HOH HOH . F 4 HOH A 173 473 95 HOH HOH . F 4 HOH A 174 474 142 HOH HOH . F 4 HOH A 175 475 66 HOH HOH . F 4 HOH A 176 476 103 HOH HOH . F 4 HOH A 177 477 104 HOH HOH . F 4 HOH A 178 478 158 HOH HOH . F 4 HOH A 179 479 74 HOH HOH . F 4 HOH A 180 480 168 HOH HOH . F 4 HOH A 181 481 232 HOH HOH . F 4 HOH A 182 482 205 HOH HOH . F 4 HOH A 183 483 69 HOH HOH . F 4 HOH A 184 484 48 HOH HOH . F 4 HOH A 185 485 145 HOH HOH . F 4 HOH A 186 486 282 HOH HOH . F 4 HOH A 187 487 269 HOH HOH . F 4 HOH A 188 488 201 HOH HOH . F 4 HOH A 189 489 143 HOH HOH . F 4 HOH A 190 490 274 HOH HOH . F 4 HOH A 191 491 97 HOH HOH . F 4 HOH A 192 492 291 HOH HOH . F 4 HOH A 193 493 199 HOH HOH . F 4 HOH A 194 494 185 HOH HOH . F 4 HOH A 195 495 225 HOH HOH . F 4 HOH A 196 496 206 HOH HOH . F 4 HOH A 197 497 153 HOH HOH . F 4 HOH A 198 498 144 HOH HOH . F 4 HOH A 199 499 171 HOH HOH . F 4 HOH A 200 500 238 HOH HOH . F 4 HOH A 201 501 79 HOH HOH . F 4 HOH A 202 502 137 HOH HOH . F 4 HOH A 203 503 149 HOH HOH . F 4 HOH A 204 504 109 HOH HOH . F 4 HOH A 205 505 279 HOH HOH . F 4 HOH A 206 506 150 HOH HOH . F 4 HOH A 207 507 254 HOH HOH . F 4 HOH A 208 508 280 HOH HOH . F 4 HOH A 209 509 136 HOH HOH . F 4 HOH A 210 510 273 HOH HOH . F 4 HOH A 211 511 256 HOH HOH . F 4 HOH A 212 512 161 HOH HOH . F 4 HOH A 213 513 239 HOH HOH . F 4 HOH A 214 514 112 HOH HOH . F 4 HOH A 215 515 172 HOH HOH . F 4 HOH A 216 516 54 HOH HOH . F 4 HOH A 217 517 250 HOH HOH . F 4 HOH A 218 518 284 HOH HOH . F 4 HOH A 219 519 249 HOH HOH . F 4 HOH A 220 520 292 HOH HOH . F 4 HOH A 221 521 67 HOH HOH . F 4 HOH A 222 522 100 HOH HOH . F 4 HOH A 223 523 133 HOH HOH . F 4 HOH A 224 524 188 HOH HOH . F 4 HOH A 225 525 119 HOH HOH . F 4 HOH A 226 526 231 HOH HOH . F 4 HOH A 227 527 127 HOH HOH . F 4 HOH A 228 528 263 HOH HOH . F 4 HOH A 229 529 166 HOH HOH . F 4 HOH A 230 530 92 HOH HOH . F 4 HOH A 231 531 21 HOH HOH . F 4 HOH A 232 532 218 HOH HOH . F 4 HOH A 233 533 240 HOH HOH . F 4 HOH A 234 534 176 HOH HOH . F 4 HOH A 235 535 134 HOH HOH . F 4 HOH A 236 536 262 HOH HOH . F 4 HOH A 237 537 35 HOH HOH . F 4 HOH A 238 538 281 HOH HOH . F 4 HOH A 239 539 246 HOH HOH . F 4 HOH A 240 540 183 HOH HOH . F 4 HOH A 241 541 261 HOH HOH . F 4 HOH A 242 542 286 HOH HOH . F 4 HOH A 243 543 283 HOH HOH . F 4 HOH A 244 544 60 HOH HOH . F 4 HOH A 245 545 175 HOH HOH . F 4 HOH A 246 546 78 HOH HOH . F 4 HOH A 247 547 277 HOH HOH . F 4 HOH A 248 548 147 HOH HOH . F 4 HOH A 249 549 252 HOH HOH . F 4 HOH A 250 550 184 HOH HOH . F 4 HOH A 251 551 181 HOH HOH . F 4 HOH A 252 552 99 HOH HOH . F 4 HOH A 253 553 268 HOH HOH . F 4 HOH A 254 554 123 HOH HOH . F 4 HOH A 255 555 202 HOH HOH . F 4 HOH A 256 556 244 HOH HOH . F 4 HOH A 257 557 148 HOH HOH . F 4 HOH A 258 558 128 HOH HOH . F 4 HOH A 259 559 270 HOH HOH . F 4 HOH A 260 560 138 HOH HOH . F 4 HOH A 261 561 116 HOH HOH . F 4 HOH A 262 562 207 HOH HOH . F 4 HOH A 263 563 203 HOH HOH . F 4 HOH A 264 564 178 HOH HOH . F 4 HOH A 265 565 124 HOH HOH . F 4 HOH A 266 566 224 HOH HOH . F 4 HOH A 267 567 110 HOH HOH . F 4 HOH A 268 568 159 HOH HOH . F 4 HOH A 269 569 264 HOH HOH . F 4 HOH A 270 570 96 HOH HOH . F 4 HOH A 271 571 180 HOH HOH . F 4 HOH A 272 572 230 HOH HOH . F 4 HOH A 273 573 49 HOH HOH . F 4 HOH A 274 574 107 HOH HOH . F 4 HOH A 275 575 157 HOH HOH . F 4 HOH A 276 576 267 HOH HOH . F 4 HOH A 277 577 115 HOH HOH . F 4 HOH A 278 578 177 HOH HOH . F 4 HOH A 279 579 160 HOH HOH . F 4 HOH A 280 580 204 HOH HOH . F 4 HOH A 281 581 125 HOH HOH . F 4 HOH A 282 582 146 HOH HOH . F 4 HOH A 283 583 174 HOH HOH . F 4 HOH A 284 584 222 HOH HOH . F 4 HOH A 285 585 141 HOH HOH . F 4 HOH A 286 586 182 HOH HOH . F 4 HOH A 287 587 117 HOH HOH . F 4 HOH A 288 588 189 HOH HOH . F 4 HOH A 289 589 140 HOH HOH . F 4 HOH A 290 590 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 13.812 45.599 7.315 1 20.03 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 3 15.058 46.273 7.067 1 15.72 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 3 12.744 46.185 6.411 1 23.01 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 3 12.504 47.529 6.846 1 18.92 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 3 13.217 46.112 4.973 1 26.49 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 3 14.03 44.938 4.835 1 30.39 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 6 #