data_5ML0
#
_model_server_result.job_id            suQmde4pSX50SeFNiESR2g 
_model_server_result.datetime_utc      '2024-11-16 11:03:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ml0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":903}' 
#
_entry.id    5ML0 
#
_exptl.entry_id    5ML0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ML0 
_cell.length_a            93.481 
_cell.length_b            93.481 
_cell.length_c            32.783 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ML0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5ML0 
_atom_sites.fract_transf_matrix[1][1]    0.010697 
_atom_sites.fract_transf_matrix[1][2]    0.006176 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 P2L A 1 901 1 P2L LIG . 
C 3 EDO A 1 902 1 EDO EDO . 
D 3 EDO A 1 903 2 EDO EDO . 
E 4 HOH A 1 1001 183 HOH HOH . 
E 4 HOH A 2 1002 147 HOH HOH . 
E 4 HOH A 3 1003 182 HOH HOH . 
E 4 HOH A 4 1004 131 HOH HOH . 
E 4 HOH A 5 1005 23 HOH HOH . 
E 4 HOH A 6 1006 48 HOH HOH . 
E 4 HOH A 7 1007 165 HOH HOH . 
E 4 HOH A 8 1008 99 HOH HOH . 
E 4 HOH A 9 1009 199 HOH HOH . 
E 4 HOH A 10 1010 1 HOH HOH . 
E 4 HOH A 11 1011 37 HOH HOH . 
E 4 HOH A 12 1012 40 HOH HOH . 
E 4 HOH A 13 1013 8 HOH HOH . 
E 4 HOH A 14 1014 151 HOH HOH . 
E 4 HOH A 15 1015 42 HOH HOH . 
E 4 HOH A 16 1016 213 HOH HOH . 
E 4 HOH A 17 1017 35 HOH HOH . 
E 4 HOH A 18 1018 28 HOH HOH . 
E 4 HOH A 19 1019 127 HOH HOH . 
E 4 HOH A 20 1020 194 HOH HOH . 
E 4 HOH A 21 1021 27 HOH HOH . 
E 4 HOH A 22 1022 96 HOH HOH . 
E 4 HOH A 23 1023 11 HOH HOH . 
E 4 HOH A 24 1024 64 HOH HOH . 
E 4 HOH A 25 1025 143 HOH HOH . 
E 4 HOH A 26 1026 212 HOH HOH . 
E 4 HOH A 27 1027 47 HOH HOH . 
E 4 HOH A 28 1028 220 HOH HOH . 
E 4 HOH A 29 1029 13 HOH HOH . 
E 4 HOH A 30 1030 76 HOH HOH . 
E 4 HOH A 31 1031 149 HOH HOH . 
E 4 HOH A 32 1032 59 HOH HOH . 
E 4 HOH A 33 1033 63 HOH HOH . 
E 4 HOH A 34 1034 128 HOH HOH . 
E 4 HOH A 35 1035 163 HOH HOH . 
E 4 HOH A 36 1036 85 HOH HOH . 
E 4 HOH A 37 1037 217 HOH HOH . 
E 4 HOH A 38 1038 190 HOH HOH . 
E 4 HOH A 39 1039 201 HOH HOH . 
E 4 HOH A 40 1040 167 HOH HOH . 
E 4 HOH A 41 1041 16 HOH HOH . 
E 4 HOH A 42 1042 104 HOH HOH . 
E 4 HOH A 43 1043 25 HOH HOH . 
E 4 HOH A 44 1044 17 HOH HOH . 
E 4 HOH A 45 1045 142 HOH HOH . 
E 4 HOH A 46 1046 101 HOH HOH . 
E 4 HOH A 47 1047 6 HOH HOH . 
E 4 HOH A 48 1048 140 HOH HOH . 
E 4 HOH A 49 1049 41 HOH HOH . 
E 4 HOH A 50 1050 197 HOH HOH . 
E 4 HOH A 51 1051 73 HOH HOH . 
E 4 HOH A 52 1052 216 HOH HOH . 
E 4 HOH A 53 1053 169 HOH HOH . 
E 4 HOH A 54 1054 208 HOH HOH . 
E 4 HOH A 55 1055 15 HOH HOH . 
E 4 HOH A 56 1056 84 HOH HOH . 
E 4 HOH A 57 1057 145 HOH HOH . 
E 4 HOH A 58 1058 78 HOH HOH . 
E 4 HOH A 59 1059 4 HOH HOH . 
E 4 HOH A 60 1060 114 HOH HOH . 
E 4 HOH A 61 1061 177 HOH HOH . 
E 4 HOH A 62 1062 38 HOH HOH . 
E 4 HOH A 63 1063 57 HOH HOH . 
E 4 HOH A 64 1064 144 HOH HOH . 
E 4 HOH A 65 1065 176 HOH HOH . 
E 4 HOH A 66 1066 34 HOH HOH . 
E 4 HOH A 67 1067 110 HOH HOH . 
E 4 HOH A 68 1068 148 HOH HOH . 
E 4 HOH A 69 1069 111 HOH HOH . 
E 4 HOH A 70 1070 2 HOH HOH . 
E 4 HOH A 71 1071 117 HOH HOH . 
E 4 HOH A 72 1072 65 HOH HOH . 
E 4 HOH A 73 1073 171 HOH HOH . 
E 4 HOH A 74 1074 189 HOH HOH . 
E 4 HOH A 75 1075 108 HOH HOH . 
E 4 HOH A 76 1076 166 HOH HOH . 
E 4 HOH A 77 1077 70 HOH HOH . 
E 4 HOH A 78 1078 210 HOH HOH . 
E 4 HOH A 79 1079 123 HOH HOH . 
E 4 HOH A 80 1080 115 HOH HOH . 
E 4 HOH A 81 1081 152 HOH HOH . 
E 4 HOH A 82 1082 206 HOH HOH . 
E 4 HOH A 83 1083 12 HOH HOH . 
E 4 HOH A 84 1084 67 HOH HOH . 
E 4 HOH A 85 1085 186 HOH HOH . 
E 4 HOH A 86 1086 87 HOH HOH . 
E 4 HOH A 87 1087 172 HOH HOH . 
E 4 HOH A 88 1088 71 HOH HOH . 
E 4 HOH A 89 1089 97 HOH HOH . 
E 4 HOH A 90 1090 54 HOH HOH . 
E 4 HOH A 91 1091 92 HOH HOH . 
E 4 HOH A 92 1092 109 HOH HOH . 
E 4 HOH A 93 1093 77 HOH HOH . 
E 4 HOH A 94 1094 58 HOH HOH . 
E 4 HOH A 95 1095 36 HOH HOH . 
E 4 HOH A 96 1096 55 HOH HOH . 
E 4 HOH A 97 1097 51 HOH HOH . 
E 4 HOH A 98 1098 95 HOH HOH . 
E 4 HOH A 99 1099 155 HOH HOH . 
E 4 HOH A 100 1100 44 HOH HOH . 
E 4 HOH A 101 1101 39 HOH HOH . 
E 4 HOH A 102 1102 125 HOH HOH . 
E 4 HOH A 103 1103 179 HOH HOH . 
E 4 HOH A 104 1104 136 HOH HOH . 
E 4 HOH A 105 1105 66 HOH HOH . 
E 4 HOH A 106 1106 50 HOH HOH . 
E 4 HOH A 107 1107 94 HOH HOH . 
E 4 HOH A 108 1108 43 HOH HOH . 
E 4 HOH A 109 1109 33 HOH HOH . 
E 4 HOH A 110 1110 181 HOH HOH . 
E 4 HOH A 111 1111 14 HOH HOH . 
E 4 HOH A 112 1112 200 HOH HOH . 
E 4 HOH A 113 1113 61 HOH HOH . 
E 4 HOH A 114 1114 69 HOH HOH . 
E 4 HOH A 115 1115 185 HOH HOH . 
E 4 HOH A 116 1116 124 HOH HOH . 
E 4 HOH A 117 1117 7 HOH HOH . 
E 4 HOH A 118 1118 105 HOH HOH . 
E 4 HOH A 119 1119 192 HOH HOH . 
E 4 HOH A 120 1120 154 HOH HOH . 
E 4 HOH A 121 1121 174 HOH HOH . 
E 4 HOH A 122 1122 52 HOH HOH . 
E 4 HOH A 123 1123 158 HOH HOH . 
E 4 HOH A 124 1124 162 HOH HOH . 
E 4 HOH A 125 1125 187 HOH HOH . 
E 4 HOH A 126 1126 207 HOH HOH . 
E 4 HOH A 127 1127 89 HOH HOH . 
E 4 HOH A 128 1128 156 HOH HOH . 
E 4 HOH A 129 1129 74 HOH HOH . 
E 4 HOH A 130 1130 126 HOH HOH . 
E 4 HOH A 131 1131 214 HOH HOH . 
E 4 HOH A 132 1132 132 HOH HOH . 
E 4 HOH A 133 1133 49 HOH HOH . 
E 4 HOH A 134 1134 175 HOH HOH . 
E 4 HOH A 135 1135 22 HOH HOH . 
E 4 HOH A 136 1136 68 HOH HOH . 
E 4 HOH A 137 1137 93 HOH HOH . 
E 4 HOH A 138 1138 60 HOH HOH . 
E 4 HOH A 139 1139 113 HOH HOH . 
E 4 HOH A 140 1140 30 HOH HOH . 
E 4 HOH A 141 1141 29 HOH HOH . 
E 4 HOH A 142 1142 98 HOH HOH . 
E 4 HOH A 143 1143 10 HOH HOH . 
E 4 HOH A 144 1144 141 HOH HOH . 
E 4 HOH A 145 1145 202 HOH HOH . 
E 4 HOH A 146 1146 103 HOH HOH . 
E 4 HOH A 147 1147 53 HOH HOH . 
E 4 HOH A 148 1148 209 HOH HOH . 
E 4 HOH A 149 1149 21 HOH HOH . 
E 4 HOH A 150 1150 157 HOH HOH . 
E 4 HOH A 151 1151 137 HOH HOH . 
E 4 HOH A 152 1152 153 HOH HOH . 
E 4 HOH A 153 1153 118 HOH HOH . 
E 4 HOH A 154 1154 100 HOH HOH . 
E 4 HOH A 155 1155 80 HOH HOH . 
E 4 HOH A 156 1156 184 HOH HOH . 
E 4 HOH A 157 1157 178 HOH HOH . 
E 4 HOH A 158 1158 83 HOH HOH . 
E 4 HOH A 159 1159 20 HOH HOH . 
E 4 HOH A 160 1160 150 HOH HOH . 
E 4 HOH A 161 1161 91 HOH HOH . 
E 4 HOH A 162 1162 138 HOH HOH . 
E 4 HOH A 163 1163 18 HOH HOH . 
E 4 HOH A 164 1164 106 HOH HOH . 
E 4 HOH A 165 1165 139 HOH HOH . 
E 4 HOH A 166 1166 218 HOH HOH . 
E 4 HOH A 167 1167 133 HOH HOH . 
E 4 HOH A 168 1168 5 HOH HOH . 
E 4 HOH A 169 1169 62 HOH HOH . 
E 4 HOH A 170 1170 146 HOH HOH . 
E 4 HOH A 171 1171 81 HOH HOH . 
E 4 HOH A 172 1172 188 HOH HOH . 
E 4 HOH A 173 1173 86 HOH HOH . 
E 4 HOH A 174 1174 82 HOH HOH . 
E 4 HOH A 175 1175 120 HOH HOH . 
E 4 HOH A 176 1176 180 HOH HOH . 
E 4 HOH A 177 1177 45 HOH HOH . 
E 4 HOH A 178 1178 112 HOH HOH . 
E 4 HOH A 179 1179 122 HOH HOH . 
E 4 HOH A 180 1180 164 HOH HOH . 
E 4 HOH A 181 1181 193 HOH HOH . 
E 4 HOH A 182 1182 72 HOH HOH . 
E 4 HOH A 183 1183 173 HOH HOH . 
E 4 HOH A 184 1184 19 HOH HOH . 
E 4 HOH A 185 1185 191 HOH HOH . 
E 4 HOH A 186 1186 211 HOH HOH . 
E 4 HOH A 187 1187 196 HOH HOH . 
E 4 HOH A 188 1188 203 HOH HOH . 
E 4 HOH A 189 1189 79 HOH HOH . 
E 4 HOH A 190 1190 205 HOH HOH . 
E 4 HOH A 191 1191 161 HOH HOH . 
E 4 HOH A 192 1192 102 HOH HOH . 
E 4 HOH A 193 1193 32 HOH HOH . 
E 4 HOH A 194 1194 107 HOH HOH . 
E 4 HOH A 195 1195 31 HOH HOH . 
E 4 HOH A 196 1196 9 HOH HOH . 
E 4 HOH A 197 1197 168 HOH HOH . 
E 4 HOH A 198 1198 134 HOH HOH . 
E 4 HOH A 199 1199 170 HOH HOH . 
E 4 HOH A 200 1200 219 HOH HOH . 
E 4 HOH A 201 1201 121 HOH HOH . 
E 4 HOH A 202 1202 130 HOH HOH . 
E 4 HOH A 203 1203 195 HOH HOH . 
E 4 HOH A 204 1204 135 HOH HOH . 
E 4 HOH A 205 1205 129 HOH HOH . 
E 4 HOH A 206 1206 46 HOH HOH . 
E 4 HOH A 207 1207 198 HOH HOH . 
E 4 HOH A 208 1208 90 HOH HOH . 
E 4 HOH A 209 1209 204 HOH HOH . 
E 4 HOH A 210 1210 3 HOH HOH . 
E 4 HOH A 211 1211 215 HOH HOH . 
E 4 HOH A 212 1212 160 HOH HOH . 
E 4 HOH A 213 1213 159 HOH HOH . 
E 4 HOH A 214 1214 24 HOH HOH . 
E 4 HOH A 215 1215 88 HOH HOH . 
E 4 HOH A 216 1216 116 HOH HOH . 
E 4 HOH A 217 1217 119 HOH HOH . 
E 4 HOH A 218 1218 26 HOH HOH . 
E 4 HOH A 219 1219 75 HOH HOH . 
E 4 HOH A 220 1220 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -9.143 0.557 16.08 1 37.66 ? C1 EDO 903 A 1 
HETATM 2 O O1 EDO . . . D 3 -7.814 0.959 15.739 1 40.96 ? O1 EDO 903 A 1 
HETATM 3 C C2 EDO . . . D 3 -9.827 1.669 16.865 1 38.61 ? C2 EDO 903 A 1 
HETATM 4 O O2 EDO . . . D 3 -11.252 1.527 16.828 1 38.64 ? O2 EDO 903 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#