data_5ML5
#
_model_server_result.job_id            0UfZz8YSm7X6xpAMJYkTsw 
_model_server_result.datetime_utc      '2024-11-28 15:01:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ml5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5ML5 
#
_exptl.entry_id    5ML5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ML5 
_cell.length_a            66.5 
_cell.length_b            69.39 
_cell.length_c            74.14 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ML5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 133 n n 
C1 C2 BOG sing 134 n n 
C1 O5 BOG sing 135 n n 
C1 H1 BOG sing 136 n n 
O1 C1' BOG sing 137 n n 
C2 O2 BOG sing 138 n n 
C2 C3 BOG sing 139 n n 
C2 H2 BOG sing 140 n n 
O2 HO2 BOG sing 141 n n 
C3 O3 BOG sing 142 n n 
C3 C4 BOG sing 143 n n 
C3 H3 BOG sing 144 n n 
O3 HO3 BOG sing 145 n n 
C4 O4 BOG sing 146 n n 
C4 C5 BOG sing 147 n n 
C4 H4 BOG sing 148 n n 
O4 HO4 BOG sing 149 n n 
C5 O5 BOG sing 150 n n 
C5 C6 BOG sing 151 n n 
C5 H5 BOG sing 152 n n 
C6 O6 BOG sing 153 n n 
C6 H61 BOG sing 154 n n 
C6 H62 BOG sing 155 n n 
O6 HO6 BOG sing 156 n n 
C1' C2' BOG sing 157 n n 
C1' "H1'1" BOG sing 158 n n 
C1' "H1'2" BOG sing 159 n n 
C2' C3' BOG sing 160 n n 
C2' "H2'1" BOG sing 161 n n 
C2' "H2'2" BOG sing 162 n n 
C3' C4' BOG sing 163 n n 
C3' "H3'1" BOG sing 164 n n 
C3' "H3'2" BOG sing 165 n n 
C4' C5' BOG sing 166 n n 
C4' "H4'1" BOG sing 167 n n 
C4' "H4'2" BOG sing 168 n n 
C5' C6' BOG sing 169 n n 
C5' "H5'1" BOG sing 170 n n 
C5' "H5'2" BOG sing 171 n n 
C6' C7' BOG sing 172 n n 
C6' "H6'1" BOG sing 173 n n 
C6' "H6'2" BOG sing 174 n n 
C7' C8' BOG sing 175 n n 
C7' "H7'1" BOG sing 176 n n 
C7' "H7'2" BOG sing 177 n n 
C8' "H8'1" BOG sing 178 n n 
C8' "H8'2" BOG sing 179 n n 
C8' "H8'3" BOG sing 180 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5ML5 
_atom_sites.fract_transf_matrix[1][1]    0.015038 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014411 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 401 1 BOG BOG . 
C 2 BOG A 1 402 2 BOG BOG . 
D 2 BOG A 1 403 4 BOG BOG . 
E 3 1VI A 1 404 1 1VI DRG . 
F 4 HOH A 1 501 155 HOH HOH . 
F 4 HOH A 2 502 30 HOH HOH . 
F 4 HOH A 3 503 48 HOH HOH . 
F 4 HOH A 4 504 141 HOH HOH . 
F 4 HOH A 5 505 135 HOH HOH . 
F 4 HOH A 6 506 145 HOH HOH . 
F 4 HOH A 7 507 31 HOH HOH . 
F 4 HOH A 8 508 22 HOH HOH . 
F 4 HOH A 9 509 128 HOH HOH . 
F 4 HOH A 10 510 64 HOH HOH . 
F 4 HOH A 11 511 132 HOH HOH . 
F 4 HOH A 12 512 40 HOH HOH . 
F 4 HOH A 13 513 17 HOH HOH . 
F 4 HOH A 14 514 156 HOH HOH . 
F 4 HOH A 15 515 36 HOH HOH . 
F 4 HOH A 16 516 60 HOH HOH . 
F 4 HOH A 17 517 24 HOH HOH . 
F 4 HOH A 18 518 146 HOH HOH . 
F 4 HOH A 19 519 45 HOH HOH . 
F 4 HOH A 20 520 3 HOH HOH . 
F 4 HOH A 21 521 131 HOH HOH . 
F 4 HOH A 22 522 13 HOH HOH . 
F 4 HOH A 23 523 20 HOH HOH . 
F 4 HOH A 24 524 50 HOH HOH . 
F 4 HOH A 25 525 1 HOH HOH . 
F 4 HOH A 26 526 19 HOH HOH . 
F 4 HOH A 27 527 37 HOH HOH . 
F 4 HOH A 28 528 120 HOH HOH . 
F 4 HOH A 29 529 10 HOH HOH . 
F 4 HOH A 30 530 62 HOH HOH . 
F 4 HOH A 31 531 46 HOH HOH . 
F 4 HOH A 32 532 51 HOH HOH . 
F 4 HOH A 33 533 9 HOH HOH . 
F 4 HOH A 34 534 41 HOH HOH . 
F 4 HOH A 35 535 127 HOH HOH . 
F 4 HOH A 36 536 130 HOH HOH . 
F 4 HOH A 37 537 129 HOH HOH . 
F 4 HOH A 38 538 117 HOH HOH . 
F 4 HOH A 39 539 152 HOH HOH . 
F 4 HOH A 40 540 53 HOH HOH . 
F 4 HOH A 41 541 35 HOH HOH . 
F 4 HOH A 42 542 134 HOH HOH . 
F 4 HOH A 43 543 123 HOH HOH . 
F 4 HOH A 44 544 44 HOH HOH . 
F 4 HOH A 45 545 137 HOH HOH . 
F 4 HOH A 46 546 27 HOH HOH . 
F 4 HOH A 47 547 6 HOH HOH . 
F 4 HOH A 48 548 144 HOH HOH . 
F 4 HOH A 49 549 38 HOH HOH . 
F 4 HOH A 50 550 147 HOH HOH . 
F 4 HOH A 51 551 15 HOH HOH . 
F 4 HOH A 52 552 14 HOH HOH . 
F 4 HOH A 53 553 149 HOH HOH . 
F 4 HOH A 54 554 33 HOH HOH . 
F 4 HOH A 55 555 150 HOH HOH . 
F 4 HOH A 56 556 140 HOH HOH . 
F 4 HOH A 57 557 5 HOH HOH . 
F 4 HOH A 58 558 57 HOH HOH . 
F 4 HOH A 59 559 86 HOH HOH . 
F 4 HOH A 60 560 54 HOH HOH . 
F 4 HOH A 61 561 96 HOH HOH . 
F 4 HOH A 62 562 11 HOH HOH . 
F 4 HOH A 63 563 28 HOH HOH . 
F 4 HOH A 64 564 4 HOH HOH . 
F 4 HOH A 65 565 153 HOH HOH . 
F 4 HOH A 66 566 139 HOH HOH . 
F 4 HOH A 67 567 23 HOH HOH . 
F 4 HOH A 68 568 12 HOH HOH . 
F 4 HOH A 69 569 52 HOH HOH . 
F 4 HOH A 70 570 43 HOH HOH . 
F 4 HOH A 71 571 42 HOH HOH . 
F 4 HOH A 72 572 21 HOH HOH . 
F 4 HOH A 73 573 2 HOH HOH . 
F 4 HOH A 74 574 124 HOH HOH . 
F 4 HOH A 75 575 8 HOH HOH . 
F 4 HOH A 76 576 119 HOH HOH . 
F 4 HOH A 77 577 47 HOH HOH . 
F 4 HOH A 78 578 143 HOH HOH . 
F 4 HOH A 79 579 136 HOH HOH . 
F 4 HOH A 80 580 125 HOH HOH . 
F 4 HOH A 81 581 61 HOH HOH . 
F 4 HOH A 82 582 157 HOH HOH . 
F 4 HOH A 83 583 39 HOH HOH . 
F 4 HOH A 84 584 55 HOH HOH . 
F 4 HOH A 85 585 18 HOH HOH . 
F 4 HOH A 86 586 58 HOH HOH . 
F 4 HOH A 87 587 7 HOH HOH . 
F 4 HOH A 88 588 56 HOH HOH . 
F 4 HOH A 89 589 29 HOH HOH . 
F 4 HOH A 90 590 118 HOH HOH . 
F 4 HOH A 91 591 126 HOH HOH . 
F 4 HOH A 92 592 133 HOH HOH . 
F 4 HOH A 93 593 26 HOH HOH . 
F 4 HOH A 94 594 121 HOH HOH . 
F 4 HOH A 95 595 32 HOH HOH . 
F 4 HOH A 96 596 59 HOH HOH . 
F 4 HOH A 97 597 16 HOH HOH . 
F 4 HOH A 98 598 151 HOH HOH . 
F 4 HOH A 99 599 34 HOH HOH . 
F 4 HOH A 100 600 154 HOH HOH . 
F 4 HOH A 101 601 142 HOH HOH . 
F 4 HOH A 102 602 25 HOH HOH . 
F 4 HOH A 103 603 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . B 2 -5.097 -10.098 -6.922 1 19.47 ? C1 BOG 401 A 1 
HETATM 2 O O1 BOG . . . B 2 -5.498 -9.073 -7.837 1 19.18 ? O1 BOG 401 A 1 
HETATM 3 C C2 BOG . . . B 2 -5.828 -11.384 -7.122 1 18.21 ? C2 BOG 401 A 1 
HETATM 4 O O2 BOG . . . B 2 -7.187 -11.22 -6.708 1 20.33 ? O2 BOG 401 A 1 
HETATM 5 C C3 BOG . . . B 2 -5.246 -12.369 -6.126 1 22.73 ? C3 BOG 401 A 1 
HETATM 6 O O3 BOG . . . B 2 -5.889 -13.617 -6.239 1 21 ? O3 BOG 401 A 1 
HETATM 7 C C4 BOG . . . B 2 -3.759 -12.616 -6.354 1 21.35 ? C4 BOG 401 A 1 
HETATM 8 O O4 BOG . . . B 2 -3.259 -13.51 -5.254 1 20.92 ? O4 BOG 401 A 1 
HETATM 9 C C5 BOG . . . B 2 -3.018 -11.314 -6.27 1 22.9 ? C5 BOG 401 A 1 
HETATM 10 O O5 BOG . . . B 2 -3.68 -10.274 -7.028 1 20.38 ? O5 BOG 401 A 1 
HETATM 11 C C6 BOG . . . B 2 -1.615 -11.609 -6.84 1 23.15 ? C6 BOG 401 A 1 
HETATM 12 O O6 BOG . . . B 2 -0.933 -10.491 -6.403 1 27.72 ? O6 BOG 401 A 1 
HETATM 13 C C1' BOG . . . B 2 -5.079 -7.725 -7.454 1 17.04 ? C1' BOG 401 A 1 
HETATM 14 C C2' BOG . . . B 2 -6.181 -6.977 -6.69 1 16.81 ? C2' BOG 401 A 1 
HETATM 15 C C3' BOG . . . B 2 -5.766 -5.563 -6.546 1 18.51 ? C3' BOG 401 A 1 
HETATM 16 C C4' BOG . . . B 2 -6.926 -4.838 -5.862 1 20.29 ? C4' BOG 401 A 1 
HETATM 17 C C5' BOG . . . B 2 -6.554 -3.392 -5.785 1 24.75 ? C5' BOG 401 A 1 
HETATM 18 C C6' BOG . . . B 2 -7.703 -2.647 -5.048 1 26.85 ? C6' BOG 401 A 1 
HETATM 19 C C7' BOG . . . B 2 -7.203 -1.281 -4.608 1 29.89 ? C7' BOG 401 A 1 
HETATM 20 C C8' BOG . . . B 2 -6.83 -0.424 -5.766 1 27.2 ? C8' BOG 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#