data_5ML5 # _model_server_result.job_id TWGrHjTpSotTPSnHMBf2sA _model_server_result.datetime_utc '2024-11-24 21:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ml5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5ML5 # _exptl.entry_id 5ML5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.565 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2,5-dimethoxyphenyl)-~{N}-[4-[4-(4-fluorophenyl)-2-methylsulfanyl-1~{H}-imidazol-5-yl]pyridin-2-yl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ML5 _cell.length_a 66.5 _cell.length_b 69.39 _cell.length_c 74.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ML5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H25 F N4 O3 S' _chem_comp.formula_weight 492.565 _chem_comp.id 1VI _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2,5-dimethoxyphenyl)-~{N}-[4-[4-(4-fluorophenyl)-2-methylsulfanyl-1~{H}-imidazol-5-yl]pyridin-2-yl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB OAC 1VI sing 1 n n OAC CAN 1VI sing 2 n n CAM CAN 1VI doub 3 n y CAM CAL 1VI sing 4 n y CAN CAO 1VI sing 5 n y CAL CAK 1VI doub 6 n y CAO CAQ 1VI doub 7 n y CAK CAQ 1VI sing 8 n y CAK OAJ 1VI sing 9 n n CAQ CAR 1VI sing 10 n n NBH CBI 1VI doub 11 n y NBH CBG 1VI sing 12 n y CAS CAR 1VI sing 13 n n CAS CAT 1VI sing 14 n n OAJ CAA 1VI sing 15 n n NBC CBG 1VI sing 16 n n NBC CAT 1VI sing 17 n n CBI CBD 1VI sing 18 n y CBG CBF 1VI doub 19 n y CAT OAP 1VI doub 20 n n CBD CBE 1VI doub 21 n y CBF CBE 1VI sing 22 n y CBE CBB 1VI sing 23 n n FAD CAG 1VI sing 24 n n CAF CAG 1VI doub 25 n y CAF CAE 1VI sing 26 n y CAG CAH 1VI sing 27 n y CAE CAW 1VI doub 28 n y CBB CAX 1VI doub 29 n y CBB NBA 1VI sing 30 n y CAH CAI 1VI doub 31 n y CAW CAI 1VI sing 32 n y CAW CAX 1VI sing 33 n n CAX NAY 1VI sing 34 n y NBA CAZ 1VI sing 35 n y NAY CAZ 1VI doub 36 n y CAZ SAV 1VI sing 37 n n SAV CAU 1VI sing 38 n n CAA H1 1VI sing 39 n n CAA H2 1VI sing 40 n n CAA H3 1VI sing 41 n n CAL H4 1VI sing 42 n n CAM H5 1VI sing 43 n n CAB H6 1VI sing 44 n n CAB H7 1VI sing 45 n n CAB H8 1VI sing 46 n n CAO H9 1VI sing 47 n n CAR H10 1VI sing 48 n n CAR H11 1VI sing 49 n n CAS H12 1VI sing 50 n n CAS H13 1VI sing 51 n n NBC H14 1VI sing 52 n n CBF H15 1VI sing 53 n n CBI H16 1VI sing 54 n n CBD H17 1VI sing 55 n n NBA H18 1VI sing 56 n n CAU H19 1VI sing 57 n n CAU H20 1VI sing 58 n n CAU H21 1VI sing 59 n n CAE H23 1VI sing 60 n n CAF H24 1VI sing 61 n n CAH H25 1VI sing 62 n n CAI H26 1VI sing 63 n n # _atom_sites.entry_id 5ML5 _atom_sites.fract_transf_matrix[1][1] 0.015038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 401 1 BOG BOG . C 2 BOG A 1 402 2 BOG BOG . D 2 BOG A 1 403 4 BOG BOG . E 3 1VI A 1 404 1 1VI DRG . F 4 HOH A 1 501 155 HOH HOH . F 4 HOH A 2 502 30 HOH HOH . F 4 HOH A 3 503 48 HOH HOH . F 4 HOH A 4 504 141 HOH HOH . F 4 HOH A 5 505 135 HOH HOH . F 4 HOH A 6 506 145 HOH HOH . F 4 HOH A 7 507 31 HOH HOH . F 4 HOH A 8 508 22 HOH HOH . F 4 HOH A 9 509 128 HOH HOH . F 4 HOH A 10 510 64 HOH HOH . F 4 HOH A 11 511 132 HOH HOH . F 4 HOH A 12 512 40 HOH HOH . F 4 HOH A 13 513 17 HOH HOH . F 4 HOH A 14 514 156 HOH HOH . F 4 HOH A 15 515 36 HOH HOH . F 4 HOH A 16 516 60 HOH HOH . F 4 HOH A 17 517 24 HOH HOH . F 4 HOH A 18 518 146 HOH HOH . F 4 HOH A 19 519 45 HOH HOH . F 4 HOH A 20 520 3 HOH HOH . F 4 HOH A 21 521 131 HOH HOH . F 4 HOH A 22 522 13 HOH HOH . F 4 HOH A 23 523 20 HOH HOH . F 4 HOH A 24 524 50 HOH HOH . F 4 HOH A 25 525 1 HOH HOH . F 4 HOH A 26 526 19 HOH HOH . F 4 HOH A 27 527 37 HOH HOH . F 4 HOH A 28 528 120 HOH HOH . F 4 HOH A 29 529 10 HOH HOH . F 4 HOH A 30 530 62 HOH HOH . F 4 HOH A 31 531 46 HOH HOH . F 4 HOH A 32 532 51 HOH HOH . F 4 HOH A 33 533 9 HOH HOH . F 4 HOH A 34 534 41 HOH HOH . F 4 HOH A 35 535 127 HOH HOH . F 4 HOH A 36 536 130 HOH HOH . F 4 HOH A 37 537 129 HOH HOH . F 4 HOH A 38 538 117 HOH HOH . F 4 HOH A 39 539 152 HOH HOH . F 4 HOH A 40 540 53 HOH HOH . F 4 HOH A 41 541 35 HOH HOH . F 4 HOH A 42 542 134 HOH HOH . F 4 HOH A 43 543 123 HOH HOH . F 4 HOH A 44 544 44 HOH HOH . F 4 HOH A 45 545 137 HOH HOH . F 4 HOH A 46 546 27 HOH HOH . F 4 HOH A 47 547 6 HOH HOH . F 4 HOH A 48 548 144 HOH HOH . F 4 HOH A 49 549 38 HOH HOH . F 4 HOH A 50 550 147 HOH HOH . F 4 HOH A 51 551 15 HOH HOH . F 4 HOH A 52 552 14 HOH HOH . F 4 HOH A 53 553 149 HOH HOH . F 4 HOH A 54 554 33 HOH HOH . F 4 HOH A 55 555 150 HOH HOH . F 4 HOH A 56 556 140 HOH HOH . F 4 HOH A 57 557 5 HOH HOH . F 4 HOH A 58 558 57 HOH HOH . F 4 HOH A 59 559 86 HOH HOH . F 4 HOH A 60 560 54 HOH HOH . F 4 HOH A 61 561 96 HOH HOH . F 4 HOH A 62 562 11 HOH HOH . F 4 HOH A 63 563 28 HOH HOH . F 4 HOH A 64 564 4 HOH HOH . F 4 HOH A 65 565 153 HOH HOH . F 4 HOH A 66 566 139 HOH HOH . F 4 HOH A 67 567 23 HOH HOH . F 4 HOH A 68 568 12 HOH HOH . F 4 HOH A 69 569 52 HOH HOH . F 4 HOH A 70 570 43 HOH HOH . F 4 HOH A 71 571 42 HOH HOH . F 4 HOH A 72 572 21 HOH HOH . F 4 HOH A 73 573 2 HOH HOH . F 4 HOH A 74 574 124 HOH HOH . F 4 HOH A 75 575 8 HOH HOH . F 4 HOH A 76 576 119 HOH HOH . F 4 HOH A 77 577 47 HOH HOH . F 4 HOH A 78 578 143 HOH HOH . F 4 HOH A 79 579 136 HOH HOH . F 4 HOH A 80 580 125 HOH HOH . F 4 HOH A 81 581 61 HOH HOH . F 4 HOH A 82 582 157 HOH HOH . F 4 HOH A 83 583 39 HOH HOH . F 4 HOH A 84 584 55 HOH HOH . F 4 HOH A 85 585 18 HOH HOH . F 4 HOH A 86 586 58 HOH HOH . F 4 HOH A 87 587 7 HOH HOH . F 4 HOH A 88 588 56 HOH HOH . F 4 HOH A 89 589 29 HOH HOH . F 4 HOH A 90 590 118 HOH HOH . F 4 HOH A 91 591 126 HOH HOH . F 4 HOH A 92 592 133 HOH HOH . F 4 HOH A 93 593 26 HOH HOH . F 4 HOH A 94 594 121 HOH HOH . F 4 HOH A 95 595 32 HOH HOH . F 4 HOH A 96 596 59 HOH HOH . F 4 HOH A 97 597 16 HOH HOH . F 4 HOH A 98 598 151 HOH HOH . F 4 HOH A 99 599 34 HOH HOH . F 4 HOH A 100 600 154 HOH HOH . F 4 HOH A 101 601 142 HOH HOH . F 4 HOH A 102 602 25 HOH HOH . F 4 HOH A 103 603 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 1VI . . . E 3 17.844 7.897 -24.451 1 64.01 ? CAA 1VI 404 A 1 HETATM 2 O OAJ 1VI . . . E 3 18.507 9.192 -24.533 1 70.29 ? OAJ 1VI 404 A 1 HETATM 3 C CAK 1VI . . . E 3 19.532 9.283 -25.449 1 70.26 ? CAK 1VI 404 A 1 HETATM 4 C CAL 1VI . . . E 3 19.375 10.051 -26.643 1 73.28 ? CAL 1VI 404 A 1 HETATM 5 C CAM 1VI . . . E 3 20.387 10.135 -27.598 1 74.29 ? CAM 1VI 404 A 1 HETATM 6 C CAN 1VI . . . E 3 21.605 9.446 -27.338 1 78.61 ? CAN 1VI 404 A 1 HETATM 7 O OAC 1VI . . . E 3 22.688 9.455 -28.193 1 75.23 ? OAC 1VI 404 A 1 HETATM 8 C CAB 1VI . . . E 3 23.635 8.305 -28.251 1 77.2 ? CAB 1VI 404 A 1 HETATM 9 C CAO 1VI . . . E 3 21.746 8.727 -26.151 1 73.94 ? CAO 1VI 404 A 1 HETATM 10 C CAQ 1VI . . . E 3 20.752 8.612 -25.168 1 62.02 ? CAQ 1VI 404 A 1 HETATM 11 C CAR 1VI . . . E 3 21.11 7.783 -24.026 1 49.01 ? CAR 1VI 404 A 1 HETATM 12 C CAS 1VI . . . E 3 21.654 6.461 -24.6 1 36.36 ? CAS 1VI 404 A 1 HETATM 13 C CAT 1VI . . . E 3 21.801 5.276 -23.62 1 29.26 ? CAT 1VI 404 A 1 HETATM 14 O OAP 1VI . . . E 3 22.035 5.454 -22.449 1 32.36 ? OAP 1VI 404 A 1 HETATM 15 N NBC 1VI . . . E 3 21.829 4.107 -24.269 1 22.28 ? NBC 1VI 404 A 1 HETATM 16 C CBG 1VI . . . E 3 21.93 2.875 -23.72 1 19.94 ? CBG 1VI 404 A 1 HETATM 17 C CBF 1VI . . . E 3 22.053 2.559 -22.362 1 18.2 ? CBF 1VI 404 A 1 HETATM 18 N NBH 1VI . . . E 3 21.85 1.886 -24.655 1 19.7 ? NBH 1VI 404 A 1 HETATM 19 C CBI 1VI . . . E 3 21.964 0.535 -24.236 1 21.36 ? CBI 1VI 404 A 1 HETATM 20 C CBD 1VI . . . E 3 22.117 0.236 -22.906 1 19.87 ? CBD 1VI 404 A 1 HETATM 21 C CBE 1VI . . . E 3 22.211 1.228 -21.912 1 19.55 ? CBE 1VI 404 A 1 HETATM 22 C CBB 1VI . . . E 3 22.291 0.904 -20.568 1 20.25 ? CBB 1VI 404 A 1 HETATM 23 N NBA 1VI . . . E 3 21.828 1.74 -19.6 1 20.11 ? NBA 1VI 404 A 1 HETATM 24 C CAZ 1VI . . . E 3 21.949 1.162 -18.44 1 20.77 ? CAZ 1VI 404 A 1 HETATM 25 S SAV 1VI . . . E 3 21.467 1.936 -16.931 1 25.9 ? SAV 1VI 404 A 1 HETATM 26 C CAU 1VI . . . E 3 21.699 0.663 -15.726 1 27.31 ? CAU 1VI 404 A 1 HETATM 27 N NAY 1VI . . . E 3 22.47 -0.056 -18.621 1 20.6 ? NAY 1VI 404 A 1 HETATM 28 C CAX 1VI . . . E 3 22.695 -0.246 -19.919 1 19 ? CAX 1VI 404 A 1 HETATM 29 C CAW 1VI . . . E 3 23.275 -1.42 -20.358 1 19.03 ? CAW 1VI 404 A 1 HETATM 30 C CAE 1VI . . . E 3 24.415 -1.483 -21.187 1 15.83 ? CAE 1VI 404 A 1 HETATM 31 C CAF 1VI . . . E 3 25.002 -2.706 -21.595 1 15.75 ? CAF 1VI 404 A 1 HETATM 32 C CAG 1VI . . . E 3 24.438 -3.904 -21.198 1 17.1 ? CAG 1VI 404 A 1 HETATM 33 F FAD 1VI . . . E 3 24.962 -5.131 -21.607 1 18.12 ? FAD 1VI 404 A 1 HETATM 34 C CAH 1VI . . . E 3 23.29 -3.853 -20.39 1 18.72 ? CAH 1VI 404 A 1 HETATM 35 C CAI 1VI . . . E 3 22.705 -2.66 -19.968 1 18.95 ? CAI 1VI 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #