data_5ML6 # _model_server_result.job_id -i19Ipld8oPCxdIdjIdV0A _model_server_result.datetime_utc '2025-07-30 22:01:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ml6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ML6 # _exptl.entry_id 5ML6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 675.258 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-azanyl-4-[[[4-[(4-chlorophenyl)methyl-cyclopentyl-sulfamoyl]phenyl]sulfonyl-(piperidin-4-ylmethyl)amino]methyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ML6 _cell.length_a 55.76 _cell.length_b 55.76 _cell.length_c 114.92 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ML6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H39 Cl N4 O6 S2' _chem_comp.formula_weight 675.258 _chem_comp.id 9GD _chem_comp.mon_nstd_flag . _chem_comp.name '2-azanyl-4-[[[4-[(4-chlorophenyl)methyl-cyclopentyl-sulfamoyl]phenyl]sulfonyl-(piperidin-4-ylmethyl)amino]methyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBS CBQ 9GD doub 1 n n CBQ OBR 9GD sing 2 n n CBQ CAE 9GD sing 3 n n CAF CAE 9GD doub 4 n y CAF CAG 9GD sing 5 n y CAE CAD 9GD sing 6 n y CAG CAB 9GD doub 7 n y OAQ SAP 9GD doub 8 n n CAD NBP 9GD sing 9 n n CAD CAC 9GD doub 10 n y CAB CAC 9GD sing 11 n y CAB CAA 9GD sing 12 n n CBG CBH 9GD sing 13 n n CBG CBF 9GD sing 14 n n SAP OAR 9GD doub 15 n n SAP NAH 9GD sing 16 n n SAP CAS 9GD sing 17 n n CBH CBI 9GD sing 18 n n CAA NAH 9GD sing 19 n n NAH CAI 9GD sing 20 n n CBF CBE 9GD sing 21 n n CAX CAS 9GD doub 22 n y CAX CAW 9GD sing 23 n y CAS CAT 9GD sing 24 n y CAK CAL 9GD sing 25 n n CAK CAJ 9GD sing 26 n n CBE CBI 9GD sing 27 n n CBE NBB 9GD sing 28 n n CAL NAM 9GD sing 29 n n CAW CAV 9GD doub 30 n y CAT CAU 9GD doub 31 n y CAI CAJ 9GD sing 32 n n CAJ CAO 9GD sing 33 n n CBC NBB 9GD sing 34 n n CBC CBD 9GD sing 35 n n NBB SAY 9GD sing 36 n n CAV CAU 9GD sing 37 n y CAV SAY 9GD sing 38 n n NAM CAN 9GD sing 39 n n CBJ CBD 9GD doub 40 n y CBJ CBK 9GD sing 41 n y CBD CBN 9GD sing 42 n y SAY OBA 9GD doub 43 n n SAY OAZ 9GD doub 44 n n CAO CAN 9GD sing 45 n n CBK CBL 9GD doub 46 n y CBN CBM 9GD doub 47 n y CBL CBM 9GD sing 48 n y CBL CL 9GD sing 49 n n CAK H1 9GD sing 50 n n CAK H2 9GD sing 51 n n CAL H3 9GD sing 52 n n CAL H4 9GD sing 53 n n NAM H5 9GD sing 54 n n CAN H7 9GD sing 55 n n CAN H8 9GD sing 56 n n CAO H9 9GD sing 57 n n CAO H10 9GD sing 58 n n CAJ H11 9GD sing 59 n n CAI H12 9GD sing 60 n n CAI H13 9GD sing 61 n n CAA H14 9GD sing 62 n n CAA H15 9GD sing 63 n n CAC H16 9GD sing 64 n n NBP H17 9GD sing 65 n n NBP H18 9GD sing 66 n n OBR H19 9GD sing 67 n n CAF H20 9GD sing 68 n n CAG H21 9GD sing 69 n n CAX H22 9GD sing 70 n n CAW H23 9GD sing 71 n n CAT H24 9GD sing 72 n n CAU H25 9GD sing 73 n n CBE H26 9GD sing 74 n n CBF H27 9GD sing 75 n n CBF H28 9GD sing 76 n n CBG H29 9GD sing 77 n n CBG H30 9GD sing 78 n n CBH H31 9GD sing 79 n n CBH H32 9GD sing 80 n n CBI H33 9GD sing 81 n n CBI H34 9GD sing 82 n n CBC H35 9GD sing 83 n n CBC H36 9GD sing 84 n n CBJ H37 9GD sing 85 n n CBK H38 9GD sing 86 n n CBM H39 9GD sing 87 n n CBN H40 9GD sing 88 n n # _atom_sites.entry_id 5ML6 _atom_sites.fract_transf_matrix[1][1] 0.017934 _atom_sites.fract_transf_matrix[1][2] 0.010354 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9GD B 1 201 1 9GD DRG . C 3 HOH B 1 301 115 HOH HOH . C 3 HOH B 2 302 117 HOH HOH . C 3 HOH B 3 303 134 HOH HOH . C 3 HOH B 4 304 127 HOH HOH . C 3 HOH B 5 305 85 HOH HOH . C 3 HOH B 6 306 50 HOH HOH . C 3 HOH B 7 307 64 HOH HOH . C 3 HOH B 8 308 121 HOH HOH . C 3 HOH B 9 309 92 HOH HOH . C 3 HOH B 10 310 80 HOH HOH . C 3 HOH B 11 311 74 HOH HOH . C 3 HOH B 12 312 132 HOH HOH . C 3 HOH B 13 313 1 HOH HOH . C 3 HOH B 14 314 104 HOH HOH . C 3 HOH B 15 315 90 HOH HOH . C 3 HOH B 16 316 68 HOH HOH . C 3 HOH B 17 317 110 HOH HOH . C 3 HOH B 18 318 88 HOH HOH . C 3 HOH B 19 319 129 HOH HOH . C 3 HOH B 20 320 46 HOH HOH . C 3 HOH B 21 321 65 HOH HOH . C 3 HOH B 22 322 93 HOH HOH . C 3 HOH B 23 323 76 HOH HOH . C 3 HOH B 24 324 72 HOH HOH . C 3 HOH B 25 325 49 HOH HOH . C 3 HOH B 26 326 67 HOH HOH . C 3 HOH B 27 327 123 HOH HOH . C 3 HOH B 28 328 135 HOH HOH . C 3 HOH B 29 329 78 HOH HOH . C 3 HOH B 30 330 7 HOH HOH . C 3 HOH B 31 331 82 HOH HOH . C 3 HOH B 32 332 124 HOH HOH . C 3 HOH B 33 333 94 HOH HOH . C 3 HOH B 34 334 63 HOH HOH . C 3 HOH B 35 335 139 HOH HOH . C 3 HOH B 36 336 58 HOH HOH . C 3 HOH B 37 337 100 HOH HOH . C 3 HOH B 38 338 29 HOH HOH . C 3 HOH B 39 339 61 HOH HOH . C 3 HOH B 40 340 77 HOH HOH . C 3 HOH B 41 341 79 HOH HOH . C 3 HOH B 42 342 44 HOH HOH . C 3 HOH B 43 343 136 HOH HOH . C 3 HOH B 44 344 86 HOH HOH . C 3 HOH B 45 345 81 HOH HOH . C 3 HOH B 46 346 98 HOH HOH . C 3 HOH B 47 347 57 HOH HOH . C 3 HOH B 48 348 137 HOH HOH . C 3 HOH B 49 349 47 HOH HOH . C 3 HOH B 50 350 119 HOH HOH . C 3 HOH B 51 351 143 HOH HOH . C 3 HOH B 52 352 125 HOH HOH . C 3 HOH B 53 353 103 HOH HOH . C 3 HOH B 54 354 147 HOH HOH . C 3 HOH B 55 355 96 HOH HOH . C 3 HOH B 56 356 55 HOH HOH . C 3 HOH B 57 357 45 HOH HOH . C 3 HOH B 58 358 122 HOH HOH . C 3 HOH B 59 359 101 HOH HOH . C 3 HOH B 60 360 30 HOH HOH . C 3 HOH B 61 361 60 HOH HOH . C 3 HOH B 62 362 75 HOH HOH . C 3 HOH B 63 363 52 HOH HOH . C 3 HOH B 64 364 69 HOH HOH . C 3 HOH B 65 365 89 HOH HOH . C 3 HOH B 66 366 73 HOH HOH . C 3 HOH B 67 367 111 HOH HOH . C 3 HOH B 68 368 62 HOH HOH . C 3 HOH B 69 369 149 HOH HOH . C 3 HOH B 70 370 133 HOH HOH . C 3 HOH B 71 371 53 HOH HOH . C 3 HOH B 72 372 51 HOH HOH . C 3 HOH B 73 373 145 HOH HOH . C 3 HOH B 74 374 54 HOH HOH . C 3 HOH B 75 375 118 HOH HOH . C 3 HOH B 76 376 141 HOH HOH . C 3 HOH B 77 377 120 HOH HOH . C 3 HOH B 78 378 107 HOH HOH . C 3 HOH B 79 379 43 HOH HOH . C 3 HOH B 80 380 108 HOH HOH . C 3 HOH B 81 381 83 HOH HOH . C 3 HOH B 82 382 95 HOH HOH . C 3 HOH B 83 383 150 HOH HOH . C 3 HOH B 84 384 130 HOH HOH . C 3 HOH B 85 385 87 HOH HOH . C 3 HOH B 86 386 146 HOH HOH . C 3 HOH B 87 387 66 HOH HOH . C 3 HOH B 88 388 56 HOH HOH . C 3 HOH B 89 389 131 HOH HOH . C 3 HOH B 90 390 126 HOH HOH . C 3 HOH B 91 391 116 HOH HOH . C 3 HOH B 92 392 112 HOH HOH . C 3 HOH B 93 393 144 HOH HOH . C 3 HOH B 94 394 140 HOH HOH . C 3 HOH B 95 395 109 HOH HOH . C 3 HOH B 96 396 102 HOH HOH . C 3 HOH B 97 397 148 HOH HOH . C 3 HOH B 98 398 138 HOH HOH . C 3 HOH B 99 399 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK 9GD . . . B 2 -21.183 33.873 4.096 1 44.88 ? CAK 9GD 201 B 1 HETATM 2 C CAL 9GD . . . B 2 -22.188 34.99 4.326 1 46.46 ? CAL 9GD 201 B 1 HETATM 3 N NAM 9GD . . . B 2 -21.922 35.528 5.679 1 47.2 ? NAM 9GD 201 B 1 HETATM 4 C CAN 9GD . . . B 2 -22.144 34.503 6.723 1 46.51 ? CAN 9GD 201 B 1 HETATM 5 C CAO 9GD . . . B 2 -21.195 33.322 6.531 1 45.28 ? CAO 9GD 201 B 1 HETATM 6 C CAJ 9GD . . . B 2 -21.348 32.75 5.124 1 43.77 ? CAJ 9GD 201 B 1 HETATM 7 C CAI 9GD . . . B 2 -20.284 31.664 4.923 1 41.13 ? CAI 9GD 201 B 1 HETATM 8 N NAH 9GD . . . B 2 -20.266 31.229 3.489 1 37.18 ? NAH 9GD 201 B 1 HETATM 9 C CAA 9GD . . . B 2 -18.988 30.616 3.113 1 38.3 ? CAA 9GD 201 B 1 HETATM 10 C CAB 9GD . . . B 2 -18.247 31.578 2.378 1 39.61 ? CAB 9GD 201 B 1 HETATM 11 C CAC 9GD . . . B 2 -17.264 32.368 2.993 1 39.43 ? CAC 9GD 201 B 1 HETATM 12 C CAD 9GD . . . B 2 -16.537 33.308 2.251 1 41.66 ? CAD 9GD 201 B 1 HETATM 13 N NBP 9GD . . . B 2 -15.599 34.062 2.839 1 43.34 ? NBP 9GD 201 B 1 HETATM 14 C CAE 9GD . . . B 2 -16.755 33.51 0.876 1 39.36 ? CAE 9GD 201 B 1 HETATM 15 C CBQ 9GD . . . B 2 -16.021 34.47 0.133 1 40.77 ? CBQ 9GD 201 B 1 HETATM 16 O OBS 9GD . . . B 2 -16.407 34.889 -0.995 1 36.88 ? OBS 9GD 201 B 1 HETATM 17 O OBR 9GD . . . B 2 -14.952 34.942 0.603 1 40.55 ? OBR 9GD 201 B 1 HETATM 18 C CAF 9GD . . . B 2 -17.732 32.707 0.278 1 40.07 ? CAF 9GD 201 B 1 HETATM 19 C CAG 9GD . . . B 2 -18.472 31.76 1.009 1 39.28 ? CAG 9GD 201 B 1 HETATM 20 S SAP 9GD . . . B 2 -21.703 30.237 3.003 1 31.25 ? SAP 9GD 201 B 1 HETATM 21 O OAQ 9GD . . . B 2 -21.564 29.802 1.554 1 34.63 ? OAQ 9GD 201 B 1 HETATM 22 O OAR 9GD . . . B 2 -22.979 31.021 3.175 1 33.25 ? OAR 9GD 201 B 1 HETATM 23 C CAS 9GD . . . B 2 -21.885 28.743 4 1 30.29 ? CAS 9GD 201 B 1 HETATM 24 C CAX 9GD . . . B 2 -20.982 27.712 3.831 1 28.47 ? CAX 9GD 201 B 1 HETATM 25 C CAW 9GD . . . B 2 -21.116 26.555 4.585 1 28.18 ? CAW 9GD 201 B 1 HETATM 26 C CAT 9GD . . . B 2 -22.937 28.621 4.906 1 29.34 ? CAT 9GD 201 B 1 HETATM 27 C CAU 9GD . . . B 2 -23.073 27.46 5.664 1 29.09 ? CAU 9GD 201 B 1 HETATM 28 C CAV 9GD . . . B 2 -22.163 26.427 5.485 1 28.71 ? CAV 9GD 201 B 1 HETATM 29 S SAY 9GD . . . B 2 -22.289 24.953 6.41 1 28.83 ? SAY 9GD 201 B 1 HETATM 30 O OAZ 9GD . . . B 2 -23.203 25.226 7.581 1 28.18 ? OAZ 9GD 201 B 1 HETATM 31 O OBA 9GD . . . B 2 -20.888 24.649 6.882 1 27.25 ? OBA 9GD 201 B 1 HETATM 32 N NBB 9GD . . . B 2 -22.933 23.464 5.473 1 31.04 ? NBB 9GD 201 B 1 HETATM 33 C CBE 9GD . . . B 2 -23.679 23.504 4.214 1 34.02 ? CBE 9GD 201 B 1 HETATM 34 C CBF 9GD . . . B 2 -24.14 24.817 3.792 1 34.15 ? CBF 9GD 201 B 1 HETATM 35 C CBG 9GD . . . B 2 -25.17 24.344 2.759 1 33.96 ? CBG 9GD 201 B 1 HETATM 36 C CBH 9GD . . . B 2 -25.554 22.906 3.082 1 33.72 ? CBH 9GD 201 B 1 HETATM 37 C CBI 9GD . . . B 2 -24.956 22.74 4.432 1 34.83 ? CBI 9GD 201 B 1 HETATM 38 C CBC 9GD . . . B 2 -21.868 22.476 5.194 1 31.39 ? CBC 9GD 201 B 1 HETATM 39 C CBD 9GD . . . B 2 -21.836 21.473 6.153 1 30.93 ? CBD 9GD 201 B 1 HETATM 40 C CBJ 9GD . . . B 2 -21.12 20.33 5.847 1 30.39 ? CBJ 9GD 201 B 1 HETATM 41 C CBK 9GD . . . B 2 -21.039 19.301 6.77 1 30.63 ? CBK 9GD 201 B 1 HETATM 42 C CBL 9GD . . . B 2 -21.671 19.435 7.995 1 32.04 ? CBL 9GD 201 B 1 HETATM 43 CL CL 9GD . . . B 2 -21.563 18.208 9.109 1 38.36 ? CL 9GD 201 B 1 HETATM 44 C CBM 9GD . . . B 2 -22.387 20.574 8.321 1 30.74 ? CBM 9GD 201 B 1 HETATM 45 C CBN 9GD . . . B 2 -22.473 21.601 7.395 1 31.85 ? CBN 9GD 201 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #