data_5ML9
#
_model_server_result.job_id            7VLdZjduN2tB6hhcjWsylA 
_model_server_result.datetime_utc      '2024-12-01 08:29:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ml9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5ML9 
#
_exptl.entry_id    5ML9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ML9 
_cell.length_a            56.481 
_cell.length_b            72.587 
_cell.length_c            96.451 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ML9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 110 A CYS 110 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 A ND2 ASN 74 A ASN 74 1_555 E C1 NAG . A NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale3 A ND2 ASN 169 A ASN 169 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5ML9 
_atom_sites.fract_transf_matrix[1][1]    0.017705 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010368 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 201 201 NAG NAG . 
D 3 NAG A 1 202 202 NAG NAG . 
E 3 NAG A 1 203 203 NAG NAG . 
F 4 SO4 A 1 204 204 SO4 SO4 . 
G 4 SO4 A 1 205 205 SO4 SO4 . 
H 5 PEG A 1 206 206 PEG PEG . 
I 5 PEG A 1 207 207 PEG PEG . 
J 5 PEG A 1 208 208 PEG PEG . 
K 5 PEG A 1 209 209 PEG PEG . 
L 6 CL A 1 210 210 CL CL . 
M 4 SO4 B 1 301 301 SO4 SO4 . 
N 7 HOH A 1 301 301 HOH HOH . 
N 7 HOH A 2 302 302 HOH HOH . 
N 7 HOH A 3 303 303 HOH HOH . 
N 7 HOH A 4 304 304 HOH HOH . 
N 7 HOH A 5 305 305 HOH HOH . 
N 7 HOH A 6 306 306 HOH HOH . 
N 7 HOH A 7 307 307 HOH HOH . 
N 7 HOH A 8 308 308 HOH HOH . 
N 7 HOH A 9 309 309 HOH HOH . 
N 7 HOH A 10 310 310 HOH HOH . 
N 7 HOH A 11 311 311 HOH HOH . 
N 7 HOH A 12 312 312 HOH HOH . 
N 7 HOH A 13 313 313 HOH HOH . 
N 7 HOH A 14 314 314 HOH HOH . 
N 7 HOH A 15 315 315 HOH HOH . 
N 7 HOH A 16 316 316 HOH HOH . 
N 7 HOH A 17 317 317 HOH HOH . 
N 7 HOH A 18 318 318 HOH HOH . 
N 7 HOH A 19 319 319 HOH HOH . 
N 7 HOH A 20 320 320 HOH HOH . 
N 7 HOH A 21 321 321 HOH HOH . 
N 7 HOH A 22 322 322 HOH HOH . 
N 7 HOH A 23 323 323 HOH HOH . 
N 7 HOH A 24 324 324 HOH HOH . 
N 7 HOH A 25 325 325 HOH HOH . 
N 7 HOH A 26 326 326 HOH HOH . 
N 7 HOH A 27 327 327 HOH HOH . 
N 7 HOH A 28 328 328 HOH HOH . 
N 7 HOH A 29 329 329 HOH HOH . 
N 7 HOH A 30 330 330 HOH HOH . 
N 7 HOH A 31 331 331 HOH HOH . 
N 7 HOH A 32 332 332 HOH HOH . 
N 7 HOH A 33 333 333 HOH HOH . 
N 7 HOH A 34 334 334 HOH HOH . 
N 7 HOH A 35 335 335 HOH HOH . 
N 7 HOH A 36 336 336 HOH HOH . 
N 7 HOH A 37 337 337 HOH HOH . 
N 7 HOH A 38 338 338 HOH HOH . 
N 7 HOH A 39 339 339 HOH HOH . 
N 7 HOH A 40 340 340 HOH HOH . 
N 7 HOH A 41 341 341 HOH HOH . 
N 7 HOH A 42 342 342 HOH HOH . 
N 7 HOH A 43 343 343 HOH HOH . 
N 7 HOH A 44 344 344 HOH HOH . 
N 7 HOH A 45 345 345 HOH HOH . 
N 7 HOH A 46 346 346 HOH HOH . 
N 7 HOH A 47 347 347 HOH HOH . 
N 7 HOH A 48 348 348 HOH HOH . 
N 7 HOH A 49 349 349 HOH HOH . 
N 7 HOH A 50 350 350 HOH HOH . 
N 7 HOH A 51 351 351 HOH HOH . 
N 7 HOH A 52 352 352 HOH HOH . 
N 7 HOH A 53 353 353 HOH HOH . 
N 7 HOH A 54 354 354 HOH HOH . 
N 7 HOH A 55 355 355 HOH HOH . 
O 7 HOH B 1 401 401 HOH HOH . 
O 7 HOH B 2 402 402 HOH HOH . 
O 7 HOH B 3 403 403 HOH HOH . 
O 7 HOH B 4 404 404 HOH HOH . 
O 7 HOH B 5 405 405 HOH HOH . 
O 7 HOH B 6 406 406 HOH HOH . 
O 7 HOH B 7 407 407 HOH HOH . 
O 7 HOH B 8 408 408 HOH HOH . 
O 7 HOH B 9 409 409 HOH HOH . 
O 7 HOH B 10 410 410 HOH HOH . 
O 7 HOH B 11 411 411 HOH HOH . 
O 7 HOH B 12 412 412 HOH HOH . 
O 7 HOH B 13 413 413 HOH HOH . 
O 7 HOH B 14 414 414 HOH HOH . 
O 7 HOH B 15 415 415 HOH HOH . 
O 7 HOH B 16 416 416 HOH HOH . 
O 7 HOH B 17 417 417 HOH HOH . 
O 7 HOH B 18 418 418 HOH HOH . 
O 7 HOH B 19 419 419 HOH HOH . 
O 7 HOH B 20 420 420 HOH HOH . 
O 7 HOH B 21 421 421 HOH HOH . 
O 7 HOH B 22 422 422 HOH HOH . 
O 7 HOH B 23 423 423 HOH HOH . 
O 7 HOH B 24 424 424 HOH HOH . 
O 7 HOH B 25 425 425 HOH HOH . 
O 7 HOH B 26 426 426 HOH HOH . 
O 7 HOH B 27 427 427 HOH HOH . 
O 7 HOH B 28 428 428 HOH HOH . 
O 7 HOH B 29 429 429 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 5.318 20.374 4.829 1 39.52 ? C1 NAG 201 A 1 
HETATM 2 C C2 NAG . . . C 3 6.559 20.739 4.018 1 38.13 ? C2 NAG 201 A 1 
HETATM 3 C C3 NAG . . . C 3 6.925 19.593 3.081 1 45.37 ? C3 NAG 201 A 1 
HETATM 4 C C4 NAG . . . C 3 7.067 18.294 3.864 1 43.23 ? C4 NAG 201 A 1 
HETATM 5 C C5 NAG . . . C 3 5.812 18.039 4.694 1 39.83 ? C5 NAG 201 A 1 
HETATM 6 C C6 NAG . . . C 3 5.929 16.829 5.592 1 51.33 ? C6 NAG 201 A 1 
HETATM 7 C C7 NAG . . . C 3 6.589 23.184 3.773 1 46.97 ? C7 NAG 201 A 1 
HETATM 8 C C8 NAG . . . C 3 6.325 24.34 2.854 1 39.53 ? C8 NAG 201 A 1 
HETATM 9 N N2 NAG . . . C 3 6.356 21.968 3.266 1 43.46 ? N2 NAG 201 A 1 
HETATM 10 O O3 NAG . . . C 3 8.139 19.9 2.406 1 37.54 ? O3 NAG 201 A 1 
HETATM 11 O O4 NAG . . . C 3 7.265 17.205 2.969 1 50.32 ? O4 NAG 201 A 1 
HETATM 12 O O5 NAG . . . C 3 5.554 19.164 5.547 1 42.32 ? O5 NAG 201 A 1 
HETATM 13 O O6 NAG . . . C 3 6.948 16.999 6.567 1 62.21 ? O6 NAG 201 A 1 
HETATM 14 O O7 NAG . . . C 3 6.99 23.344 4.922 1 51.08 ? O7 NAG 201 A 1 
HETATM 15 H H1 NAG . . . C 3 4.567 20.242 4.22 1 47.52 ? H1 NAG 201 A 1 
HETATM 16 H H2 NAG . . . C 3 7.302 20.872 4.637 1 45.86 ? H2 NAG 201 A 1 
HETATM 17 H H3 NAG . . . C 3 6.215 19.487 2.42 1 54.55 ? H3 NAG 201 A 1 
HETATM 18 H H4 NAG . . . C 3 7.837 18.362 4.46 1 51.98 ? H4 NAG 201 A 1 
HETATM 19 H H5 NAG . . . C 3 5.054 17.915 4.092 1 47.9 ? H5 NAG 201 A 1 
HETATM 20 H H61 NAG . . . C 3 5.076 16.684 6.044 1 61.7 ? H61 NAG 201 A 1 
HETATM 21 H H62 NAG . . . C 3 6.137 16.046 5.046 1 61.7 ? H62 NAG 201 A 1 
HETATM 22 H H81 NAG . . . C 3 6.525 25.175 3.317 1 47.54 ? H81 NAG 201 A 1 
HETATM 23 H H82 NAG . . . C 3 6.891 24.262 2.063 1 47.54 ? H82 NAG 201 A 1 
HETATM 24 H H83 NAG . . . C 3 5.387 24.334 2.585 1 47.54 ? H83 NAG 201 A 1 
HETATM 25 H HN2 NAG . . . C 3 6.058 21.906 2.406 1 52.26 ? HN2 NAG 201 A 1 
HETATM 26 H HO3 NAG . . . C 3 7.958 20.184 1.584 1 45.15 ? HO3 NAG 201 A 1 
HETATM 27 H HO4 NAG . . . C 3 8.103 17.21 2.677 1 60.48 ? HO4 NAG 201 A 1 
HETATM 28 H HO6 NAG . . . C 3 7.576 16.383 6.449 1 74.75 ? HO6 NAG 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           28 
#