data_5ML9
#
_model_server_result.job_id            G1qrFgkEqNef9UuFPniXSA 
_model_server_result.datetime_utc      '2024-11-14 17:31:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ml9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":209}' 
#
_entry.id    5ML9 
#
_exptl.entry_id    5ML9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ML9 
_cell.length_a            56.481 
_cell.length_b            72.587 
_cell.length_c            96.451 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ML9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 110 A CYS 110 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 A ND2 ASN 74 A ASN 74 1_555 E C1 NAG . A NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale3 A ND2 ASN 169 A ASN 169 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 267 n n 
C1 C2 PEG sing 268 n n 
C1 H11 PEG sing 269 n n 
C1 H12 PEG sing 270 n n 
O1 HO1 PEG sing 271 n n 
C2 O2 PEG sing 272 n n 
C2 H21 PEG sing 273 n n 
C2 H22 PEG sing 274 n n 
O2 C3 PEG sing 275 n n 
C3 C4 PEG sing 276 n n 
C3 H31 PEG sing 277 n n 
C3 H32 PEG sing 278 n n 
C4 O4 PEG sing 279 n n 
C4 H41 PEG sing 280 n n 
C4 H42 PEG sing 281 n n 
O4 HO4 PEG sing 282 n n 
#
_atom_sites.entry_id                     5ML9 
_atom_sites.fract_transf_matrix[1][1]    0.017705 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010368 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 201 201 NAG NAG . 
D 3 NAG A 1 202 202 NAG NAG . 
E 3 NAG A 1 203 203 NAG NAG . 
F 4 SO4 A 1 204 204 SO4 SO4 . 
G 4 SO4 A 1 205 205 SO4 SO4 . 
H 5 PEG A 1 206 206 PEG PEG . 
I 5 PEG A 1 207 207 PEG PEG . 
J 5 PEG A 1 208 208 PEG PEG . 
K 5 PEG A 1 209 209 PEG PEG . 
L 6 CL A 1 210 210 CL CL . 
M 4 SO4 B 1 301 301 SO4 SO4 . 
N 7 HOH A 1 301 301 HOH HOH . 
N 7 HOH A 2 302 302 HOH HOH . 
N 7 HOH A 3 303 303 HOH HOH . 
N 7 HOH A 4 304 304 HOH HOH . 
N 7 HOH A 5 305 305 HOH HOH . 
N 7 HOH A 6 306 306 HOH HOH . 
N 7 HOH A 7 307 307 HOH HOH . 
N 7 HOH A 8 308 308 HOH HOH . 
N 7 HOH A 9 309 309 HOH HOH . 
N 7 HOH A 10 310 310 HOH HOH . 
N 7 HOH A 11 311 311 HOH HOH . 
N 7 HOH A 12 312 312 HOH HOH . 
N 7 HOH A 13 313 313 HOH HOH . 
N 7 HOH A 14 314 314 HOH HOH . 
N 7 HOH A 15 315 315 HOH HOH . 
N 7 HOH A 16 316 316 HOH HOH . 
N 7 HOH A 17 317 317 HOH HOH . 
N 7 HOH A 18 318 318 HOH HOH . 
N 7 HOH A 19 319 319 HOH HOH . 
N 7 HOH A 20 320 320 HOH HOH . 
N 7 HOH A 21 321 321 HOH HOH . 
N 7 HOH A 22 322 322 HOH HOH . 
N 7 HOH A 23 323 323 HOH HOH . 
N 7 HOH A 24 324 324 HOH HOH . 
N 7 HOH A 25 325 325 HOH HOH . 
N 7 HOH A 26 326 326 HOH HOH . 
N 7 HOH A 27 327 327 HOH HOH . 
N 7 HOH A 28 328 328 HOH HOH . 
N 7 HOH A 29 329 329 HOH HOH . 
N 7 HOH A 30 330 330 HOH HOH . 
N 7 HOH A 31 331 331 HOH HOH . 
N 7 HOH A 32 332 332 HOH HOH . 
N 7 HOH A 33 333 333 HOH HOH . 
N 7 HOH A 34 334 334 HOH HOH . 
N 7 HOH A 35 335 335 HOH HOH . 
N 7 HOH A 36 336 336 HOH HOH . 
N 7 HOH A 37 337 337 HOH HOH . 
N 7 HOH A 38 338 338 HOH HOH . 
N 7 HOH A 39 339 339 HOH HOH . 
N 7 HOH A 40 340 340 HOH HOH . 
N 7 HOH A 41 341 341 HOH HOH . 
N 7 HOH A 42 342 342 HOH HOH . 
N 7 HOH A 43 343 343 HOH HOH . 
N 7 HOH A 44 344 344 HOH HOH . 
N 7 HOH A 45 345 345 HOH HOH . 
N 7 HOH A 46 346 346 HOH HOH . 
N 7 HOH A 47 347 347 HOH HOH . 
N 7 HOH A 48 348 348 HOH HOH . 
N 7 HOH A 49 349 349 HOH HOH . 
N 7 HOH A 50 350 350 HOH HOH . 
N 7 HOH A 51 351 351 HOH HOH . 
N 7 HOH A 52 352 352 HOH HOH . 
N 7 HOH A 53 353 353 HOH HOH . 
N 7 HOH A 54 354 354 HOH HOH . 
N 7 HOH A 55 355 355 HOH HOH . 
O 7 HOH B 1 401 401 HOH HOH . 
O 7 HOH B 2 402 402 HOH HOH . 
O 7 HOH B 3 403 403 HOH HOH . 
O 7 HOH B 4 404 404 HOH HOH . 
O 7 HOH B 5 405 405 HOH HOH . 
O 7 HOH B 6 406 406 HOH HOH . 
O 7 HOH B 7 407 407 HOH HOH . 
O 7 HOH B 8 408 408 HOH HOH . 
O 7 HOH B 9 409 409 HOH HOH . 
O 7 HOH B 10 410 410 HOH HOH . 
O 7 HOH B 11 411 411 HOH HOH . 
O 7 HOH B 12 412 412 HOH HOH . 
O 7 HOH B 13 413 413 HOH HOH . 
O 7 HOH B 14 414 414 HOH HOH . 
O 7 HOH B 15 415 415 HOH HOH . 
O 7 HOH B 16 416 416 HOH HOH . 
O 7 HOH B 17 417 417 HOH HOH . 
O 7 HOH B 18 418 418 HOH HOH . 
O 7 HOH B 19 419 419 HOH HOH . 
O 7 HOH B 20 420 420 HOH HOH . 
O 7 HOH B 21 421 421 HOH HOH . 
O 7 HOH B 22 422 422 HOH HOH . 
O 7 HOH B 23 423 423 HOH HOH . 
O 7 HOH B 24 424 424 HOH HOH . 
O 7 HOH B 25 425 425 HOH HOH . 
O 7 HOH B 26 426 426 HOH HOH . 
O 7 HOH B 27 427 427 HOH HOH . 
O 7 HOH B 28 428 428 HOH HOH . 
O 7 HOH B 29 429 429 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 PEG . . . K 5 -0.306 20.03 10.467 1 69.92 ? O2 PEG 209 A 1 
HETATM 2 C C3 PEG . . . K 5 -1.157 21.172 10.476 1 50.03 ? C3 PEG 209 A 1 
HETATM 3 C C4 PEG . . . K 5 -1.537 21.551 9.054 1 38.86 ? C4 PEG 209 A 1 
HETATM 4 O O4 PEG . . . K 5 -1.581 22.978 8.947 1 33.52 ? O4 PEG 209 A 1 
HETATM 5 H H31 PEG . . . K 5 -0.644 22.009 10.954 1 60.13 ? H31 PEG 209 A 1 
HETATM 6 H H32 PEG . . . K 5 -2.06 20.954 11.051 1 60.13 ? H32 PEG 209 A 1 
HETATM 7 H H41 PEG . . . K 5 -2.513 21.13 8.806 1 46.74 ? H41 PEG 209 A 1 
HETATM 8 H H42 PEG . . . K 5 -0.802 21.149 8.354 1 46.74 ? H42 PEG 209 A 1 
HETATM 9 H HO4 PEG . . . K 5 -1.823 23.226 8.044 1 40.33 ? HO4 PEG 209 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#