data_5MLM # _model_server_result.job_id auj8HUKuW_VNdIoOUwkPsg _model_server_result.datetime_utc '2025-09-05 10:14:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5MLM # _exptl.entry_id 5MLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MLM _cell.length_a 78.288 _cell.length_b 78.288 _cell.length_c 135.869 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 5MLM _atom_sites.fract_transf_matrix[1][1] 0.012773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STR A 1 401 1 STR PRG . C 3 NAP A 1 402 2 NAP NAP . D 4 HOH A 1 501 114 HOH HOH . D 4 HOH A 2 502 42 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 116 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 28 HOH HOH . D 4 HOH A 7 507 46 HOH HOH . D 4 HOH A 8 508 1 HOH HOH . D 4 HOH A 9 509 109 HOH HOH . D 4 HOH A 10 510 121 HOH HOH . D 4 HOH A 11 511 37 HOH HOH . D 4 HOH A 12 512 36 HOH HOH . D 4 HOH A 13 513 22 HOH HOH . D 4 HOH A 14 514 84 HOH HOH . D 4 HOH A 15 515 115 HOH HOH . D 4 HOH A 16 516 50 HOH HOH . D 4 HOH A 17 517 92 HOH HOH . D 4 HOH A 18 518 76 HOH HOH . D 4 HOH A 19 519 117 HOH HOH . D 4 HOH A 20 520 11 HOH HOH . D 4 HOH A 21 521 9 HOH HOH . D 4 HOH A 22 522 15 HOH HOH . D 4 HOH A 23 523 44 HOH HOH . D 4 HOH A 24 524 41 HOH HOH . D 4 HOH A 25 525 32 HOH HOH . D 4 HOH A 26 526 10 HOH HOH . D 4 HOH A 27 527 2 HOH HOH . D 4 HOH A 28 528 51 HOH HOH . D 4 HOH A 29 529 66 HOH HOH . D 4 HOH A 30 530 35 HOH HOH . D 4 HOH A 31 531 77 HOH HOH . D 4 HOH A 32 532 40 HOH HOH . D 4 HOH A 33 533 55 HOH HOH . D 4 HOH A 34 534 20 HOH HOH . D 4 HOH A 35 535 118 HOH HOH . D 4 HOH A 36 536 47 HOH HOH . D 4 HOH A 37 537 19 HOH HOH . D 4 HOH A 38 538 64 HOH HOH . D 4 HOH A 39 539 120 HOH HOH . D 4 HOH A 40 540 62 HOH HOH . D 4 HOH A 41 541 122 HOH HOH . D 4 HOH A 42 542 17 HOH HOH . D 4 HOH A 43 543 29 HOH HOH . D 4 HOH A 44 544 69 HOH HOH . D 4 HOH A 45 545 33 HOH HOH . D 4 HOH A 46 546 4 HOH HOH . D 4 HOH A 47 547 59 HOH HOH . D 4 HOH A 48 548 26 HOH HOH . D 4 HOH A 49 549 38 HOH HOH . D 4 HOH A 50 550 119 HOH HOH . D 4 HOH A 51 551 14 HOH HOH . D 4 HOH A 52 552 104 HOH HOH . D 4 HOH A 53 553 52 HOH HOH . D 4 HOH A 54 554 71 HOH HOH . D 4 HOH A 55 555 5 HOH HOH . D 4 HOH A 56 556 48 HOH HOH . D 4 HOH A 57 557 65 HOH HOH . D 4 HOH A 58 558 30 HOH HOH . D 4 HOH A 59 559 61 HOH HOH . D 4 HOH A 60 560 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -26.454 -10.964 23.291 1 50.54 ? PA NAP 402 A 1 HETATM 2 O O1A NAP . . . C 3 -25.256 -11.783 22.999 1 62.38 ? O1A NAP 402 A 1 HETATM 3 O O2A NAP . . . C 3 -27.39 -11.622 24.31 1 54.37 ? O2A NAP 402 A 1 HETATM 4 O O5B NAP . . . C 3 -26.048 -9.559 23.94 1 48.86 ? O5B NAP 402 A 1 HETATM 5 C C5B NAP . . . C 3 -26.932 -8.623 24.596 1 57.84 ? C5B NAP 402 A 1 HETATM 6 C C4B NAP . . . C 3 -26.097 -7.59 25.315 1 62.11 ? C4B NAP 402 A 1 HETATM 7 O O4B NAP . . . C 3 -26.928 -6.474 25.726 1 65.78 ? O4B NAP 402 A 1 HETATM 8 C C3B NAP . . . C 3 -25.414 -8.087 26.588 1 69.28 ? C3B NAP 402 A 1 HETATM 9 O O3B NAP . . . C 3 -24.256 -7.316 26.885 1 71.55 ? O3B NAP 402 A 1 HETATM 10 C C2B NAP . . . C 3 -26.498 -7.787 27.614 1 74.44 ? C2B NAP 402 A 1 HETATM 11 O O2B NAP . . . C 3 -25.996 -7.78 28.965 1 79.93 ? O2B NAP 402 A 1 HETATM 12 C C1B NAP . . . C 3 -26.966 -6.412 27.143 1 75.6 ? C1B NAP 402 A 1 HETATM 13 N N9A NAP . . . C 3 -28.298 -5.972 27.57 1 72.47 ? N9A NAP 402 A 1 HETATM 14 C C8A NAP . . . C 3 -29.419 -6.749 27.727 1 65.17 ? C8A NAP 402 A 1 HETATM 15 N N7A NAP . . . C 3 -30.489 -6.075 28.058 1 63.66 ? N7A NAP 402 A 1 HETATM 16 C C5A NAP . . . C 3 -30.047 -4.76 28.135 1 69.79 ? C5A NAP 402 A 1 HETATM 17 C C6A NAP . . . C 3 -30.707 -3.546 28.414 1 73.3 ? C6A NAP 402 A 1 HETATM 18 N N6A NAP . . . C 3 -32.003 -3.453 28.726 1 77.34 ? N6A NAP 402 A 1 HETATM 19 N N1A NAP . . . C 3 -29.977 -2.409 28.371 1 64.78 ? N1A NAP 402 A 1 HETATM 20 C C2A NAP . . . C 3 -28.675 -2.494 28.09 1 57.97 ? C2A NAP 402 A 1 HETATM 21 N N3A NAP . . . C 3 -27.947 -3.58 27.82 1 63.57 ? N3A NAP 402 A 1 HETATM 22 C C4A NAP . . . C 3 -28.697 -4.688 27.845 1 65.49 ? C4A NAP 402 A 1 HETATM 23 O O3 NAP . . . C 3 -27.156 -10.468 21.945 1 64.71 ? O3 NAP 402 A 1 HETATM 24 P PN NAP . . . C 3 -26.727 -10.57 20.401 1 53.05 ? PN NAP 402 A 1 HETATM 25 O O1N NAP . . . C 3 -26.893 -11.982 19.987 1 59.04 ? O1N NAP 402 A 1 HETATM 26 O O2N NAP . . . C 3 -25.438 -9.885 20.169 1 57.98 ? O2N NAP 402 A 1 HETATM 27 O O5D NAP . . . C 3 -27.889 -9.707 19.752 1 42.19 ? O5D NAP 402 A 1 HETATM 28 C C5D NAP . . . C 3 -27.669 -8.52 18.981 1 47.27 ? C5D NAP 402 A 1 HETATM 29 C C4D NAP . . . C 3 -28.52 -8.71 17.748 1 52.13 ? C4D NAP 402 A 1 HETATM 30 O O4D NAP . . . C 3 -28.007 -9.842 17.009 1 48.74 ? O4D NAP 402 A 1 HETATM 31 C C3D NAP . . . C 3 -29.983 -9.046 18.025 1 50.49 ? C3D NAP 402 A 1 HETATM 32 O O3D NAP . . . C 3 -30.848 -8.315 17.16 1 50.12 ? O3D NAP 402 A 1 HETATM 33 C C2D NAP . . . C 3 -30.022 -10.557 17.778 1 53.75 ? C2D NAP 402 A 1 HETATM 34 O O2D NAP . . . C 3 -31.277 -11.011 17.284 1 58.17 ? O2D NAP 402 A 1 HETATM 35 C C1D NAP . . . C 3 -29.031 -10.662 16.593 1 53.44 ? C1D NAP 402 A 1 HETATM 36 N N1N NAP . . . C 3 -28.426 -12.066 16.296 1 48.95 ? N1N NAP 402 A 1 HETATM 37 C C2N NAP . . . C 3 -27.89 -12.87 17.293 1 38.91 ? C2N NAP 402 A 1 HETATM 38 C C3N NAP . . . C 3 -27.375 -14.113 16.969 1 33.17 ? C3N NAP 402 A 1 HETATM 39 C C7N NAP . . . C 3 -26.671 -14.972 17.962 1 46.25 ? C7N NAP 402 A 1 HETATM 40 O O7N NAP . . . C 3 -26.337 -16.116 17.643 1 49.79 ? O7N NAP 402 A 1 HETATM 41 N N7N NAP . . . C 3 -26.459 -14.468 19.193 1 41.35 ? N7N NAP 402 A 1 HETATM 42 C C4N NAP . . . C 3 -27.408 -14.53 15.647 1 27.62 ? C4N NAP 402 A 1 HETATM 43 C C5N NAP . . . C 3 -27.922 -13.704 14.671 1 32.63 ? C5N NAP 402 A 1 HETATM 44 C C6N NAP . . . C 3 -28.432 -12.476 15.014 1 42.09 ? C6N NAP 402 A 1 HETATM 45 P P2B NAP . . . C 3 -26.946 -7.872 30.25 1 79.28 ? P2B NAP 402 A 1 HETATM 46 O O1X NAP . . . C 3 -28.022 -8.923 30.144 1 70.26 ? O1X NAP 402 A 1 HETATM 47 O O2X NAP . . . C 3 -25.932 -8.177 31.381 1 74.29 ? O2X NAP 402 A 1 HETATM 48 O O3X NAP . . . C 3 -27.467 -6.397 30.285 1 67.14 ? O3X NAP 402 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #