data_5MLS
#
_model_server_result.job_id            gp5JjBlXa704CsyBvh2yJg 
_model_server_result.datetime_utc      '2024-11-01 02:29:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5mls 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":307}' 
#
_entry.id    5MLS 
#
_exptl.entry_id    5MLS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.58 
_cell.angle_gamma         90 
_cell.entry_id            5MLS 
_cell.length_a            70.417 
_cell.length_b            71.597 
_cell.length_c            73.069 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5MLS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
covale ? covale1 C C GLU 9 D GLU 525 1_555 C N TYS 10 D TYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C TYS 10 D TYS 526 1_555 C N LEU 11 D LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
metalc ? metalc1 B O LYS 174 H LYS 169 1_555 M NA NA . H NA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 B O THR 177 H THR 172 1_555 M NA NA . H NA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 B O PHE 215 H PHE 204 1_555 M NA NA . H NA 310 4_556 A ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc4 B O ARG 233 H ARG 221 1_555 N NA NA . H NA 311 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc5 B O LYS 236 H LYS 224 1_555 N NA NA . H NA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc6 M NA NA . H NA 310 1_555 P O HOH . H HOH 457 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc7 M NA NA . H NA 310 1_555 P O HOH . H HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc8 M NA NA . H NA 310 1_555 P O HOH . H HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc9 N NA NA . H NA 311 1_555 P O HOH . H HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc10 N NA NA . H NA 311 1_555 P O HOH . H HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc11 N NA NA . H NA 311 1_555 P O HOH . H HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc12 N NA NA . H NA 311 1_555 P O HOH . H HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 191 n n 
C1 C2 GOL sing 192 n n 
C1 H11 GOL sing 193 n n 
C1 H12 GOL sing 194 n n 
O1 HO1 GOL sing 195 n n 
C2 O2 GOL sing 196 n n 
C2 C3 GOL sing 197 n n 
C2 H2 GOL sing 198 n n 
O2 HO2 GOL sing 199 n n 
C3 O3 GOL sing 200 n n 
C3 H31 GOL sing 201 n n 
C3 H32 GOL sing 202 n n 
O3 HO3 GOL sing 203 n n 
#
_atom_sites.entry_id                     5MLS 
_atom_sites.fract_transf_matrix[1][1]    0.014201 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002652 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013967 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 22U H 1 301 1 22U T43 . 
E 5 DMS H 1 302 1 DMS DMS . 
F 6 PO4 H 1 303 2 PO4 PO4 . 
G 7 GOL H 1 304 3 GOL GOL . 
H 7 GOL H 1 305 4 GOL GOL . 
I 7 GOL H 1 306 5 GOL GOL . 
J 7 GOL H 1 307 6 GOL GOL . 
K 7 GOL H 1 308 8 GOL GOL . 
L 7 GOL H 1 309 9 GOL GOL . 
M 8 NA H 1 310 10 NA NA . 
N 8 NA H 1 311 11 NA NA . 
O 9 HOH L 1 101 183 HOH HOH . 
O 9 HOH L 2 102 137 HOH HOH . 
O 9 HOH L 3 103 114 HOH HOH . 
O 9 HOH L 4 104 65 HOH HOH . 
O 9 HOH L 5 105 5 HOH HOH . 
O 9 HOH L 6 106 10 HOH HOH . 
O 9 HOH L 7 107 109 HOH HOH . 
O 9 HOH L 8 108 8 HOH HOH . 
O 9 HOH L 9 109 43 HOH HOH . 
O 9 HOH L 10 110 42 HOH HOH . 
O 9 HOH L 11 111 -25 HOH HOH . 
O 9 HOH L 12 112 3 HOH HOH . 
O 9 HOH L 13 113 17 HOH HOH . 
O 9 HOH L 14 114 14 HOH HOH . 
O 9 HOH L 15 115 187 HOH HOH . 
O 9 HOH L 16 116 59 HOH HOH . 
O 9 HOH L 17 117 101 HOH HOH . 
O 9 HOH L 18 118 -1 HOH HOH . 
O 9 HOH L 19 119 26 HOH HOH . 
O 9 HOH L 20 120 132 HOH HOH . 
O 9 HOH L 21 121 117 HOH HOH . 
O 9 HOH L 22 122 105 HOH HOH . 
O 9 HOH L 23 123 148 HOH HOH . 
O 9 HOH L 24 124 80 HOH HOH . 
O 9 HOH L 25 125 126 HOH HOH . 
P 9 HOH H 1 401 174 HOH HOH . 
P 9 HOH H 2 402 124 HOH HOH . 
P 9 HOH H 3 403 23 HOH HOH . 
P 9 HOH H 4 404 67 HOH HOH . 
P 9 HOH H 5 405 196 HOH HOH . 
P 9 HOH H 6 406 133 HOH HOH . 
P 9 HOH H 7 407 193 HOH HOH . 
P 9 HOH H 8 408 178 HOH HOH . 
P 9 HOH H 9 409 83 HOH HOH . 
P 9 HOH H 10 410 118 HOH HOH . 
P 9 HOH H 11 411 9 HOH HOH . 
P 9 HOH H 12 412 166 HOH HOH . 
P 9 HOH H 13 413 39 HOH HOH . 
P 9 HOH H 14 414 45 HOH HOH . 
P 9 HOH H 15 415 107 HOH HOH . 
P 9 HOH H 16 416 91 HOH HOH . 
P 9 HOH H 17 417 13 HOH HOH . 
P 9 HOH H 18 418 46 HOH HOH . 
P 9 HOH H 19 419 87 HOH HOH . 
P 9 HOH H 20 420 -33 HOH HOH . 
P 9 HOH H 21 421 11 HOH HOH . 
P 9 HOH H 22 422 29 HOH HOH . 
P 9 HOH H 23 423 -6 HOH HOH . 
P 9 HOH H 24 424 -27 HOH HOH . 
P 9 HOH H 25 425 182 HOH HOH . 
P 9 HOH H 26 426 51 HOH HOH . 
P 9 HOH H 27 427 180 HOH HOH . 
P 9 HOH H 28 428 144 HOH HOH . 
P 9 HOH H 29 429 85 HOH HOH . 
P 9 HOH H 30 430 22 HOH HOH . 
P 9 HOH H 31 431 127 HOH HOH . 
P 9 HOH H 32 432 -32 HOH HOH . 
P 9 HOH H 33 433 139 HOH HOH . 
P 9 HOH H 34 434 -22 HOH HOH . 
P 9 HOH H 35 435 146 HOH HOH . 
P 9 HOH H 36 436 33 HOH HOH . 
P 9 HOH H 37 437 -17 HOH HOH . 
P 9 HOH H 38 438 120 HOH HOH . 
P 9 HOH H 39 439 -3 HOH HOH . 
P 9 HOH H 40 440 37 HOH HOH . 
P 9 HOH H 41 441 52 HOH HOH . 
P 9 HOH H 42 442 -24 HOH HOH . 
P 9 HOH H 43 443 -15 HOH HOH . 
P 9 HOH H 44 444 25 HOH HOH . 
P 9 HOH H 45 445 116 HOH HOH . 
P 9 HOH H 46 446 12 HOH HOH . 
P 9 HOH H 47 447 -4 HOH HOH . 
P 9 HOH H 48 448 53 HOH HOH . 
P 9 HOH H 49 449 -26 HOH HOH . 
P 9 HOH H 50 450 -34 HOH HOH . 
P 9 HOH H 51 451 24 HOH HOH . 
P 9 HOH H 52 452 6 HOH HOH . 
P 9 HOH H 53 453 167 HOH HOH . 
P 9 HOH H 54 454 78 HOH HOH . 
P 9 HOH H 55 455 152 HOH HOH . 
P 9 HOH H 56 456 99 HOH HOH . 
P 9 HOH H 57 457 156 HOH HOH . 
P 9 HOH H 58 458 21 HOH HOH . 
P 9 HOH H 59 459 98 HOH HOH . 
P 9 HOH H 60 460 123 HOH HOH . 
P 9 HOH H 61 461 20 HOH HOH . 
P 9 HOH H 62 462 190 HOH HOH . 
P 9 HOH H 63 463 15 HOH HOH . 
P 9 HOH H 64 464 1 HOH HOH . 
P 9 HOH H 65 465 68 HOH HOH . 
P 9 HOH H 66 466 90 HOH HOH . 
P 9 HOH H 67 467 16 HOH HOH . 
P 9 HOH H 68 468 -8 HOH HOH . 
P 9 HOH H 69 469 111 HOH HOH . 
P 9 HOH H 70 470 38 HOH HOH . 
P 9 HOH H 71 471 79 HOH HOH . 
P 9 HOH H 72 472 50 HOH HOH . 
P 9 HOH H 73 473 121 HOH HOH . 
P 9 HOH H 74 474 0 HOH HOH . 
P 9 HOH H 75 475 -14 HOH HOH . 
P 9 HOH H 76 476 -16 HOH HOH . 
P 9 HOH H 77 477 -28 HOH HOH . 
P 9 HOH H 78 478 19 HOH HOH . 
P 9 HOH H 79 479 179 HOH HOH . 
P 9 HOH H 80 480 112 HOH HOH . 
P 9 HOH H 81 481 -29 HOH HOH . 
P 9 HOH H 82 482 62 HOH HOH . 
P 9 HOH H 83 483 41 HOH HOH . 
P 9 HOH H 84 484 18 HOH HOH . 
P 9 HOH H 85 485 2 HOH HOH . 
P 9 HOH H 86 486 7 HOH HOH . 
P 9 HOH H 87 487 28 HOH HOH . 
P 9 HOH H 88 488 40 HOH HOH . 
P 9 HOH H 89 489 31 HOH HOH . 
P 9 HOH H 90 490 -23 HOH HOH . 
P 9 HOH H 91 491 32 HOH HOH . 
P 9 HOH H 92 492 188 HOH HOH . 
P 9 HOH H 93 493 102 HOH HOH . 
P 9 HOH H 94 494 170 HOH HOH . 
P 9 HOH H 95 495 184 HOH HOH . 
P 9 HOH H 96 496 186 HOH HOH . 
P 9 HOH H 97 497 106 HOH HOH . 
P 9 HOH H 98 498 -19 HOH HOH . 
P 9 HOH H 99 499 81 HOH HOH . 
P 9 HOH H 100 500 -21 HOH HOH . 
P 9 HOH H 101 501 60 HOH HOH . 
P 9 HOH H 102 502 -12 HOH HOH . 
P 9 HOH H 103 503 73 HOH HOH . 
P 9 HOH H 104 504 34 HOH HOH . 
P 9 HOH H 105 505 149 HOH HOH . 
P 9 HOH H 106 506 138 HOH HOH . 
P 9 HOH H 107 507 54 HOH HOH . 
P 9 HOH H 108 508 -13 HOH HOH . 
P 9 HOH H 109 509 -5 HOH HOH . 
P 9 HOH H 110 510 -30 HOH HOH . 
P 9 HOH H 111 511 -9 HOH HOH . 
P 9 HOH H 112 512 165 HOH HOH . 
P 9 HOH H 113 513 48 HOH HOH . 
P 9 HOH H 114 514 143 HOH HOH . 
P 9 HOH H 115 515 49 HOH HOH . 
P 9 HOH H 116 516 55 HOH HOH . 
P 9 HOH H 117 517 145 HOH HOH . 
P 9 HOH H 118 518 58 HOH HOH . 
P 9 HOH H 119 519 177 HOH HOH . 
P 9 HOH H 120 520 70 HOH HOH . 
P 9 HOH H 121 521 57 HOH HOH . 
P 9 HOH H 122 522 119 HOH HOH . 
P 9 HOH H 123 523 142 HOH HOH . 
P 9 HOH H 124 524 72 HOH HOH . 
P 9 HOH H 125 525 96 HOH HOH . 
P 9 HOH H 126 526 66 HOH HOH . 
P 9 HOH H 127 527 134 HOH HOH . 
P 9 HOH H 128 528 169 HOH HOH . 
P 9 HOH H 129 529 89 HOH HOH . 
P 9 HOH H 130 530 151 HOH HOH . 
P 9 HOH H 131 531 176 HOH HOH . 
P 9 HOH H 132 532 69 HOH HOH . 
P 9 HOH H 133 533 30 HOH HOH . 
P 9 HOH H 134 534 115 HOH HOH . 
P 9 HOH H 135 535 86 HOH HOH . 
P 9 HOH H 136 536 110 HOH HOH . 
P 9 HOH H 137 537 163 HOH HOH . 
P 9 HOH H 138 538 171 HOH HOH . 
P 9 HOH H 139 539 194 HOH HOH . 
P 9 HOH H 140 540 75 HOH HOH . 
P 9 HOH H 141 541 128 HOH HOH . 
P 9 HOH H 142 542 113 HOH HOH . 
P 9 HOH H 143 543 -7 HOH HOH . 
P 9 HOH H 144 544 56 HOH HOH . 
P 9 HOH H 145 545 71 HOH HOH . 
P 9 HOH H 146 546 27 HOH HOH . 
P 9 HOH H 147 547 168 HOH HOH . 
P 9 HOH H 148 548 191 HOH HOH . 
P 9 HOH H 149 549 147 HOH HOH . 
P 9 HOH H 150 550 172 HOH HOH . 
P 9 HOH H 151 551 100 HOH HOH . 
P 9 HOH H 152 552 103 HOH HOH . 
P 9 HOH H 153 553 82 HOH HOH . 
P 9 HOH H 154 554 95 HOH HOH . 
P 9 HOH H 155 555 162 HOH HOH . 
P 9 HOH H 156 556 189 HOH HOH . 
P 9 HOH H 157 557 129 HOH HOH . 
P 9 HOH H 158 558 47 HOH HOH . 
P 9 HOH H 159 559 122 HOH HOH . 
P 9 HOH H 160 560 160 HOH HOH . 
P 9 HOH H 161 561 185 HOH HOH . 
Q 9 HOH D 1 601 161 HOH HOH . 
Q 9 HOH D 2 602 181 HOH HOH . 
Q 9 HOH D 3 603 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 7 32.405 -5.723 26.649 1 31.55 ? C1 GOL 307 H 1 
HETATM 2 O O1 GOL . . . J 7 32.013 -7.06 26.861 1 32.72 ? O1 GOL 307 H 1 
HETATM 3 C C2 GOL . . . J 7 33.902 -5.554 26.929 1 38.05 ? C2 GOL 307 H 1 
HETATM 4 O O2 GOL . . . J 7 34.377 -4.414 26.245 1 41.89 ? O2 GOL 307 H 1 
HETATM 5 C C3 GOL . . . J 7 34.212 -5.411 28.428 1 36.41 ? C3 GOL 307 H 1 
HETATM 6 O O3 GOL . . . J 7 33.222 -4.662 29.103 1 34.04 ? O3 GOL 307 H 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#