data_5MM0 # _model_server_result.job_id urtCbT5RRThE-GVb0DHxOw _model_server_result.datetime_utc '2025-06-24 02:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5MM0 # _exptl.entry_id 5MM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MM0 _cell.length_a 90.67 _cell.length_b 146.32 _cell.length_c 95.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 113 A ASP 91 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A OE1 GLN 115 A GLN 93 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc3 B O2A GDD . A GDD 401 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc4 B O2B GDD . A GDD 401 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 227 n n N1 CM1 LDA sing 228 n n N1 CM2 LDA sing 229 n n N1 C1 LDA sing 230 n n CM1 HM11 LDA sing 231 n n CM1 HM12 LDA sing 232 n n CM1 HM13 LDA sing 233 n n CM2 HM21 LDA sing 234 n n CM2 HM22 LDA sing 235 n n CM2 HM23 LDA sing 236 n n C1 C2 LDA sing 237 n n C1 H11 LDA sing 238 n n C1 H12 LDA sing 239 n n C2 C3 LDA sing 240 n n C2 H21 LDA sing 241 n n C2 H22 LDA sing 242 n n C3 C4 LDA sing 243 n n C3 H31 LDA sing 244 n n C3 H32 LDA sing 245 n n C4 C5 LDA sing 246 n n C4 H41 LDA sing 247 n n C4 H42 LDA sing 248 n n C5 C6 LDA sing 249 n n C5 H51 LDA sing 250 n n C5 H52 LDA sing 251 n n C6 C7 LDA sing 252 n n C6 H61 LDA sing 253 n n C6 H62 LDA sing 254 n n C7 C8 LDA sing 255 n n C7 H71 LDA sing 256 n n C7 H72 LDA sing 257 n n C8 C9 LDA sing 258 n n C8 H81 LDA sing 259 n n C8 H82 LDA sing 260 n n C9 C10 LDA sing 261 n n C9 H91 LDA sing 262 n n C9 H92 LDA sing 263 n n C10 C11 LDA sing 264 n n C10 H101 LDA sing 265 n n C10 H102 LDA sing 266 n n C11 C12 LDA sing 267 n n C11 H111 LDA sing 268 n n C11 H112 LDA sing 269 n n C12 H121 LDA sing 270 n n C12 H122 LDA sing 271 n n C12 H123 LDA sing 272 n n # _atom_sites.entry_id 5MM0 _atom_sites.fract_transf_matrix[1][1] 0.011029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDD A 1 401 400 GDD GDD . C 3 MN A 1 402 401 MN MN . D 4 CL A 1 403 402 CL CL . E 5 LDA A 1 404 600 LDA LDA . F 5 LDA A 1 405 601 LDA LDA . G 5 LDA A 1 406 602 LDA LDA . H 5 LDA A 1 407 603 LDA LDA . I 5 LDA A 1 408 604 LDA LDA . J 6 HOH A 1 1001 1001 HOH HOH . J 6 HOH A 2 1002 1006 HOH HOH . J 6 HOH A 3 1003 1009 HOH HOH . J 6 HOH A 4 1004 1014 HOH HOH . J 6 HOH A 5 1005 1003 HOH HOH . J 6 HOH A 6 1006 1013 HOH HOH . J 6 HOH A 7 1007 1008 HOH HOH . J 6 HOH A 8 1008 1007 HOH HOH . J 6 HOH A 9 1009 1010 HOH HOH . J 6 HOH A 10 1010 1005 HOH HOH . J 6 HOH A 11 1011 1012 HOH HOH . J 6 HOH A 12 1012 1002 HOH HOH . J 6 HOH A 13 1013 1004 HOH HOH . J 6 HOH A 14 1014 1011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . F 5 47.77 -9.198 -26.557 1 141.35 ? N1 LDA 405 A 1 HETATM 2 O O1 LDA . . . F 5 47.145 -9.579 -27.574 1 143.94 ? O1 LDA 405 A 1 HETATM 3 C CM1 LDA . . . F 5 48.007 -10.356 -25.677 1 134.95 ? CM1 LDA 405 A 1 HETATM 4 C CM2 LDA . . . F 5 46.946 -8.22 -25.821 1 130.34 ? CM2 LDA 405 A 1 HETATM 5 C C1 LDA . . . F 5 49.069 -8.659 -26.958 1 138.85 ? C1 LDA 405 A 1 HETATM 6 C C2 LDA . . . F 5 48.934 -7.158 -27.231 1 122.6 ? C2 LDA 405 A 1 HETATM 7 C C3 LDA . . . F 5 50.269 -6.435 -27.076 1 115.31 ? C3 LDA 405 A 1 HETATM 8 C C4 LDA . . . F 5 50.247 -5.583 -25.811 1 111.75 ? C4 LDA 405 A 1 HETATM 9 C C5 LDA . . . F 5 50.041 -4.104 -26.112 1 104.24 ? C5 LDA 405 A 1 HETATM 10 C C6 LDA . . . F 5 51.374 -3.361 -26.101 1 97.05 ? C6 LDA 405 A 1 HETATM 11 C C7 LDA . . . F 5 51.735 -2.888 -24.697 1 97.81 ? C7 LDA 405 A 1 HETATM 12 C C8 LDA . . . F 5 52.325 -1.479 -24.737 1 96.35 ? C8 LDA 405 A 1 HETATM 13 C C9 LDA . . . F 5 52.894 -1.043 -23.388 1 97.48 ? C9 LDA 405 A 1 HETATM 14 C C10 LDA . . . F 5 52.444 0.379 -23.042 1 98.48 ? C10 LDA 405 A 1 HETATM 15 C C11 LDA . . . F 5 52.792 0.764 -21.606 1 92.79 ? C11 LDA 405 A 1 HETATM 16 C C12 LDA . . . F 5 51.601 1.382 -20.887 1 89.3 ? C12 LDA 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #