data_5MM6 # _model_server_result.job_id w84rmPQLtAoekZEfQY0vEA _model_server_result.datetime_utc '2024-11-01 01:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 5MM6 # _exptl.entry_id 5MM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.48 _cell.angle_gamma 90 _cell.entry_id 5MM6 _cell.length_a 70.344 _cell.length_b 71.649 _cell.length_c 72.538 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 J N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 C C GLU 9 I GLU 525 1_555 C N TYS 10 I TYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 C C TYS 10 I TYS 526 1_555 C N LEU 11 I LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 L NA NA . H NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 L NA NA . H NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 B O PHE 215 H PHE 204 1_555 L NA NA . H NA 309 4_556 A ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 K NA NA . H NA 308 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 K NA NA . H NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 K NA NA . H NA 308 1_555 P O HOH . H HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc7 K NA NA . H NA 308 1_555 P O HOH . H HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 K NA NA . H NA 308 1_555 P O HOH . H HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc9 K NA NA . H NA 308 1_555 P O HOH . H HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc10 L NA NA . H NA 309 1_555 P O HOH . H HOH 469 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc11 L NA NA . H NA 309 1_555 P O HOH . H HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc12 L NA NA . H NA 309 1_555 P O HOH . H HOH 569 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 197 n n C1 C2 GOL sing 198 n n C1 H11 GOL sing 199 n n C1 H12 GOL sing 200 n n O1 HO1 GOL sing 201 n n C2 O2 GOL sing 202 n n C2 C3 GOL sing 203 n n C2 H2 GOL sing 204 n n O2 HO2 GOL sing 205 n n C3 O3 GOL sing 206 n n C3 H31 GOL sing 207 n n C3 H32 GOL sing 208 n n O3 HO3 GOL sing 209 n n # _atom_sites.entry_id 5MM6 _atom_sites.fract_transf_matrix[1][1] 0.014216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 1 GOL GOL . E 4 GOL H 1 302 2 GOL GOL . F 4 GOL H 1 303 3 GOL GOL . G 5 DMS H 1 304 4 DMS DMS . H 5 DMS H 1 305 5 DMS DMS . I 6 PO4 H 1 306 6 PO4 PO4 . J 4 GOL H 1 307 8 GOL GOL . K 7 NA H 1 308 9 NA NA . L 7 NA H 1 309 10 NA NA . M 4 GOL H 1 310 11 GOL GOL . N 8 32U H 1 311 1 32U T42 . O 9 HOH L 1 101 132 HOH HOH . O 9 HOH L 2 102 80 HOH HOH . O 9 HOH L 3 103 149 HOH HOH . O 9 HOH L 4 104 36 HOH HOH . O 9 HOH L 5 105 55 HOH HOH . O 9 HOH L 6 106 2 HOH HOH . O 9 HOH L 7 107 30 HOH HOH . O 9 HOH L 8 108 54 HOH HOH . O 9 HOH L 9 109 -28 HOH HOH . O 9 HOH L 10 110 285 HOH HOH . O 9 HOH L 11 111 161 HOH HOH . O 9 HOH L 12 112 64 HOH HOH . O 9 HOH L 13 113 195 HOH HOH . O 9 HOH L 14 114 -8 HOH HOH . O 9 HOH L 15 115 29 HOH HOH . O 9 HOH L 16 116 154 HOH HOH . O 9 HOH L 17 117 7 HOH HOH . O 9 HOH L 18 118 27 HOH HOH . O 9 HOH L 19 119 169 HOH HOH . O 9 HOH L 20 120 268 HOH HOH . O 9 HOH L 21 121 248 HOH HOH . O 9 HOH L 22 122 125 HOH HOH . O 9 HOH L 23 123 289 HOH HOH . O 9 HOH L 24 124 286 HOH HOH . O 9 HOH L 25 125 147 HOH HOH . O 9 HOH L 26 126 287 HOH HOH . O 9 HOH L 27 127 108 HOH HOH . P 9 HOH H 1 401 256 HOH HOH . P 9 HOH H 2 402 244 HOH HOH . P 9 HOH H 3 403 123 HOH HOH . P 9 HOH H 4 404 99 HOH HOH . P 9 HOH H 5 405 94 HOH HOH . P 9 HOH H 6 406 79 HOH HOH . P 9 HOH H 7 407 11 HOH HOH . P 9 HOH H 8 408 246 HOH HOH . P 9 HOH H 9 409 283 HOH HOH . P 9 HOH H 10 410 82 HOH HOH . P 9 HOH H 11 411 71 HOH HOH . P 9 HOH H 12 412 44 HOH HOH . P 9 HOH H 13 413 140 HOH HOH . P 9 HOH H 14 414 28 HOH HOH . P 9 HOH H 15 415 171 HOH HOH . P 9 HOH H 16 416 21 HOH HOH . P 9 HOH H 17 417 98 HOH HOH . P 9 HOH H 18 418 261 HOH HOH . P 9 HOH H 19 419 63 HOH HOH . P 9 HOH H 20 420 20 HOH HOH . P 9 HOH H 21 421 24 HOH HOH . P 9 HOH H 22 422 70 HOH HOH . P 9 HOH H 23 423 263 HOH HOH . P 9 HOH H 24 424 5 HOH HOH . P 9 HOH H 25 425 253 HOH HOH . P 9 HOH H 26 426 31 HOH HOH . P 9 HOH H 27 427 42 HOH HOH . P 9 HOH H 28 428 243 HOH HOH . P 9 HOH H 29 429 57 HOH HOH . P 9 HOH H 30 430 292 HOH HOH . P 9 HOH H 31 431 194 HOH HOH . P 9 HOH H 32 432 -18 HOH HOH . P 9 HOH H 33 433 59 HOH HOH . P 9 HOH H 34 434 75 HOH HOH . P 9 HOH H 35 435 128 HOH HOH . P 9 HOH H 36 436 25 HOH HOH . P 9 HOH H 37 437 185 HOH HOH . P 9 HOH H 38 438 296 HOH HOH . P 9 HOH H 39 439 165 HOH HOH . P 9 HOH H 40 440 -23 HOH HOH . P 9 HOH H 41 441 -34 HOH HOH . P 9 HOH H 42 442 225 HOH HOH . P 9 HOH H 43 443 -6 HOH HOH . P 9 HOH H 44 444 241 HOH HOH . P 9 HOH H 45 445 -17 HOH HOH . P 9 HOH H 46 446 -3 HOH HOH . P 9 HOH H 47 447 143 HOH HOH . P 9 HOH H 48 448 -31 HOH HOH . P 9 HOH H 49 449 101 HOH HOH . P 9 HOH H 50 450 90 HOH HOH . P 9 HOH H 51 451 105 HOH HOH . P 9 HOH H 52 452 279 HOH HOH . P 9 HOH H 53 453 3 HOH HOH . P 9 HOH H 54 454 34 HOH HOH . P 9 HOH H 55 455 -15 HOH HOH . P 9 HOH H 56 456 164 HOH HOH . P 9 HOH H 57 457 271 HOH HOH . P 9 HOH H 58 458 222 HOH HOH . P 9 HOH H 59 459 43 HOH HOH . P 9 HOH H 60 460 49 HOH HOH . P 9 HOH H 61 461 15 HOH HOH . P 9 HOH H 62 462 113 HOH HOH . P 9 HOH H 63 463 -21 HOH HOH . P 9 HOH H 64 464 121 HOH HOH . P 9 HOH H 65 465 239 HOH HOH . P 9 HOH H 66 466 -25 HOH HOH . P 9 HOH H 67 467 -12 HOH HOH . P 9 HOH H 68 468 -26 HOH HOH . P 9 HOH H 69 469 -29 HOH HOH . P 9 HOH H 70 470 0 HOH HOH . P 9 HOH H 71 471 13 HOH HOH . P 9 HOH H 72 472 295 HOH HOH . P 9 HOH H 73 473 -1 HOH HOH . P 9 HOH H 74 474 193 HOH HOH . P 9 HOH H 75 475 51 HOH HOH . P 9 HOH H 76 476 -30 HOH HOH . P 9 HOH H 77 477 -16 HOH HOH . P 9 HOH H 78 478 148 HOH HOH . P 9 HOH H 79 479 -33 HOH HOH . P 9 HOH H 80 480 -10 HOH HOH . P 9 HOH H 81 481 14 HOH HOH . P 9 HOH H 82 482 -11 HOH HOH . P 9 HOH H 83 483 72 HOH HOH . P 9 HOH H 84 484 196 HOH HOH . P 9 HOH H 85 485 -9 HOH HOH . P 9 HOH H 86 486 23 HOH HOH . P 9 HOH H 87 487 6 HOH HOH . P 9 HOH H 88 488 -4 HOH HOH . P 9 HOH H 89 489 -27 HOH HOH . P 9 HOH H 90 490 77 HOH HOH . P 9 HOH H 91 491 302 HOH HOH . P 9 HOH H 92 492 122 HOH HOH . P 9 HOH H 93 493 97 HOH HOH . P 9 HOH H 94 494 60 HOH HOH . P 9 HOH H 95 495 84 HOH HOH . P 9 HOH H 96 496 270 HOH HOH . P 9 HOH H 97 497 18 HOH HOH . P 9 HOH H 98 498 -20 HOH HOH . P 9 HOH H 99 499 67 HOH HOH . P 9 HOH H 100 500 298 HOH HOH . P 9 HOH H 101 501 16 HOH HOH . P 9 HOH H 102 502 293 HOH HOH . P 9 HOH H 103 503 22 HOH HOH . P 9 HOH H 104 504 91 HOH HOH . P 9 HOH H 105 505 68 HOH HOH . P 9 HOH H 106 506 10 HOH HOH . P 9 HOH H 107 507 179 HOH HOH . P 9 HOH H 108 508 251 HOH HOH . P 9 HOH H 109 509 217 HOH HOH . P 9 HOH H 110 510 32 HOH HOH . P 9 HOH H 111 511 4 HOH HOH . P 9 HOH H 112 512 9 HOH HOH . P 9 HOH H 113 513 144 HOH HOH . P 9 HOH H 114 514 8 HOH HOH . P 9 HOH H 115 515 -13 HOH HOH . P 9 HOH H 116 516 17 HOH HOH . P 9 HOH H 117 517 -35 HOH HOH . P 9 HOH H 118 518 175 HOH HOH . P 9 HOH H 119 519 35 HOH HOH . P 9 HOH H 120 520 -32 HOH HOH . P 9 HOH H 121 521 69 HOH HOH . P 9 HOH H 122 522 1 HOH HOH . P 9 HOH H 123 523 -24 HOH HOH . P 9 HOH H 124 524 221 HOH HOH . P 9 HOH H 125 525 151 HOH HOH . P 9 HOH H 126 526 281 HOH HOH . P 9 HOH H 127 527 50 HOH HOH . P 9 HOH H 128 528 52 HOH HOH . P 9 HOH H 129 529 46 HOH HOH . P 9 HOH H 130 530 137 HOH HOH . P 9 HOH H 131 531 245 HOH HOH . P 9 HOH H 132 532 152 HOH HOH . P 9 HOH H 133 533 -14 HOH HOH . P 9 HOH H 134 534 188 HOH HOH . P 9 HOH H 135 535 87 HOH HOH . P 9 HOH H 136 536 61 HOH HOH . P 9 HOH H 137 537 265 HOH HOH . P 9 HOH H 138 538 131 HOH HOH . P 9 HOH H 139 539 120 HOH HOH . P 9 HOH H 140 540 167 HOH HOH . P 9 HOH H 141 541 127 HOH HOH . P 9 HOH H 142 542 146 HOH HOH . P 9 HOH H 143 543 240 HOH HOH . P 9 HOH H 144 544 96 HOH HOH . P 9 HOH H 145 545 218 HOH HOH . P 9 HOH H 146 546 214 HOH HOH . P 9 HOH H 147 547 92 HOH HOH . P 9 HOH H 148 548 282 HOH HOH . P 9 HOH H 149 549 301 HOH HOH . P 9 HOH H 150 550 299 HOH HOH . P 9 HOH H 151 551 273 HOH HOH . P 9 HOH H 152 552 66 HOH HOH . P 9 HOH H 153 553 117 HOH HOH . P 9 HOH H 154 554 47 HOH HOH . P 9 HOH H 155 555 272 HOH HOH . P 9 HOH H 156 556 191 HOH HOH . P 9 HOH H 157 557 83 HOH HOH . P 9 HOH H 158 558 155 HOH HOH . P 9 HOH H 159 559 158 HOH HOH . P 9 HOH H 160 560 134 HOH HOH . P 9 HOH H 161 561 288 HOH HOH . P 9 HOH H 162 562 182 HOH HOH . P 9 HOH H 163 563 255 HOH HOH . P 9 HOH H 164 564 41 HOH HOH . P 9 HOH H 165 565 266 HOH HOH . P 9 HOH H 166 566 300 HOH HOH . P 9 HOH H 167 567 277 HOH HOH . P 9 HOH H 168 568 114 HOH HOH . P 9 HOH H 169 569 112 HOH HOH . P 9 HOH H 170 570 138 HOH HOH . P 9 HOH H 171 571 12 HOH HOH . P 9 HOH H 172 572 19 HOH HOH . P 9 HOH H 173 573 150 HOH HOH . P 9 HOH H 174 574 107 HOH HOH . P 9 HOH H 175 575 278 HOH HOH . P 9 HOH H 176 576 135 HOH HOH . P 9 HOH H 177 577 250 HOH HOH . P 9 HOH H 178 578 297 HOH HOH . P 9 HOH H 179 579 86 HOH HOH . P 9 HOH H 180 580 88 HOH HOH . P 9 HOH H 181 581 145 HOH HOH . P 9 HOH H 182 582 275 HOH HOH . P 9 HOH H 183 583 242 HOH HOH . P 9 HOH H 184 584 153 HOH HOH . P 9 HOH H 185 585 267 HOH HOH . P 9 HOH H 186 586 116 HOH HOH . P 9 HOH H 187 587 142 HOH HOH . P 9 HOH H 188 588 78 HOH HOH . P 9 HOH H 189 589 284 HOH HOH . P 9 HOH H 190 590 252 HOH HOH . P 9 HOH H 191 591 294 HOH HOH . Q 9 HOH I 1 601 290 HOH HOH . Q 9 HOH I 2 602 190 HOH HOH . Q 9 HOH I 3 603 33 HOH HOH . Q 9 HOH I 4 604 274 HOH HOH . Q 9 HOH I 5 605 141 HOH HOH . Q 9 HOH I 6 606 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 34.129 -5.526 28.258 1 34.56 ? C1 GOL 303 H 1 HETATM 2 O O1 GOL . . . F 4 33.308 -4.527 28.82 1 34.07 ? O1 GOL 303 H 1 HETATM 3 C C2 GOL . . . F 4 33.954 -5.54 26.736 1 34.47 ? C2 GOL 303 H 1 HETATM 4 O O2 GOL . . . F 4 34.343 -4.289 26.208 1 36.53 ? O2 GOL 303 H 1 HETATM 5 C C3 GOL . . . F 4 32.504 -5.839 26.351 1 33.6 ? C3 GOL 303 H 1 HETATM 6 O O3 GOL . . . F 4 32.12 -7.073 26.912 1 34.47 ? O3 GOL 303 H 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #