data_5MM7 # _model_server_result.job_id wvAA4aks1YaohwH47urONQ _model_server_result.datetime_utc '2025-03-06 00:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5MM7 # _exptl.entry_id 5MM7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MM7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 186 K GLY 186 1_555 D MG MG . K MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 D MG MG . K MG 500 1_555 E O2B ANP . K ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 D MG MG . K MG 500 1_555 E O2A ANP . K ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 B OG1 THR 145 A THR 145 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 F O2G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc6 F O3G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 F O3B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 F O2B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5MM7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG K 1 500 500 MG MG . E 5 ANP K 1 501 501 ANP ANP . F 6 GTP A 1 501 501 GTP GTP . G 4 MG A 1 502 502 MG MG . H 7 TA1 B 1 501 502 TA1 TA1 . I 8 GDP B 1 502 501 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 5 73.766 52.658 57.844 1 281.15 ? PG ANP 501 K 1 HETATM 2 O O1G ANP . . . E 5 72.898 51.347 57.967 1 281.15 ? O1G ANP 501 K 1 HETATM 3 O O2G ANP . . . E 5 73.089 53.754 58.518 1 281.15 ? O2G ANP 501 K 1 HETATM 4 O O3G ANP . . . E 5 75.167 52.468 58.519 1 281.15 ? O3G ANP 501 K 1 HETATM 5 P PB ANP . . . E 5 74.908 54.2 55.673 1 281.15 ? PB ANP 501 K 1 HETATM 6 O O1B ANP . . . E 5 74.062 55.164 54.986 1 281.15 ? O1B ANP 501 K 1 HETATM 7 O O2B ANP . . . E 5 75.605 54.934 56.875 1 281.15 ? O2B ANP 501 K 1 HETATM 8 N N3B ANP . . . E 5 74.061 52.969 56.287 1 281.15 ? N3B ANP 501 K 1 HETATM 9 P PA ANP . . . E 5 77.624 54.055 54.708 1 281.15 ? PA ANP 501 K 1 HETATM 10 O O1A ANP . . . E 5 78.418 52.817 54.782 1 281.15 ? O1A ANP 501 K 1 HETATM 11 O O2A ANP . . . E 5 77.923 54.878 55.941 1 281.15 ? O2A ANP 501 K 1 HETATM 12 O O3A ANP . . . E 5 76.077 53.677 54.746 1 281.15 ? O3A ANP 501 K 1 HETATM 13 O O5' ANP . . . E 5 77.99 54.945 53.415 1 281.15 ? O5' ANP 501 K 1 HETATM 14 C C5' ANP . . . E 5 78.851 54.42 52.381 1 281.15 ? C5' ANP 501 K 1 HETATM 15 C C4' ANP . . . E 5 80.114 55.24 52.261 1 281.15 ? C4' ANP 501 K 1 HETATM 16 O O4' ANP . . . E 5 79.898 56.358 51.378 1 281.15 ? O4' ANP 501 K 1 HETATM 17 C C3' ANP . . . E 5 80.605 55.885 53.545 1 281.15 ? C3' ANP 501 K 1 HETATM 18 O O3' ANP . . . E 5 81.331 54.957 54.341 1 281.15 ? O3' ANP 501 K 1 HETATM 19 C C2' ANP . . . E 5 81.497 57.017 53.021 1 281.15 ? C2' ANP 501 K 1 HETATM 20 O O2' ANP . . . E 5 82.837 56.584 52.822 1 281.15 ? O2' ANP 501 K 1 HETATM 21 C C1' ANP . . . E 5 80.842 57.373 51.675 1 281.15 ? C1' ANP 501 K 1 HETATM 22 N N9 ANP . . . E 5 80.152 58.657 51.655 1 281.15 ? N9 ANP 501 K 1 HETATM 23 C C8 ANP . . . E 5 78.814 58.854 51.434 1 281.15 ? C8 ANP 501 K 1 HETATM 24 N N7 ANP . . . E 5 78.439 60.109 51.459 1 281.15 ? N7 ANP 501 K 1 HETATM 25 C C5 ANP . . . E 5 79.617 60.793 51.714 1 281.15 ? C5 ANP 501 K 1 HETATM 26 C C6 ANP . . . E 5 79.905 62.167 51.859 1 281.15 ? C6 ANP 501 K 1 HETATM 27 N N6 ANP . . . E 5 78.987 63.133 51.761 1 281.15 ? N6 ANP 501 K 1 HETATM 28 N N1 ANP . . . E 5 81.185 62.517 52.106 1 281.15 ? N1 ANP 501 K 1 HETATM 29 C C2 ANP . . . E 5 82.11 61.557 52.199 1 281.15 ? C2 ANP 501 K 1 HETATM 30 N N3 ANP . . . E 5 81.959 60.234 52.081 1 281.15 ? N3 ANP 501 K 1 HETATM 31 C C4 ANP . . . E 5 80.68 59.918 51.838 1 281.15 ? C4 ANP 501 K 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #