data_5MM7 # _model_server_result.job_id MLrvFU6NiaXXI7xdFuNdxQ _model_server_result.datetime_utc '2025-07-07 22:01:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5MM7 # _exptl.entry_id 5MM7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MM7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 186 K GLY 186 1_555 D MG MG . K MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 D MG MG . K MG 500 1_555 E O2B ANP . K ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 D MG MG . K MG 500 1_555 E O2A ANP . K ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 B OG1 THR 145 A THR 145 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 F O2G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc6 F O3G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 F O3B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 F O2B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 224 n n PG O2G GTP sing 225 n n PG O3G GTP sing 226 n n PG O3B GTP sing 227 n n O2G HOG2 GTP sing 228 n n O3G HOG3 GTP sing 229 n n O3B PB GTP sing 230 n n PB O1B GTP doub 231 n n PB O2B GTP sing 232 n n PB O3A GTP sing 233 n n O2B HOB2 GTP sing 234 n n O3A PA GTP sing 235 n n PA O1A GTP doub 236 n n PA O2A GTP sing 237 n n PA O5' GTP sing 238 n n O2A HOA2 GTP sing 239 n n O5' C5' GTP sing 240 n n C5' C4' GTP sing 241 n n C5' H5' GTP sing 242 n n C5' "H5''" GTP sing 243 n n C4' O4' GTP sing 244 n n C4' C3' GTP sing 245 n n C4' H4' GTP sing 246 n n O4' C1' GTP sing 247 n n C3' O3' GTP sing 248 n n C3' C2' GTP sing 249 n n C3' H3' GTP sing 250 n n O3' HO3' GTP sing 251 n n C2' O2' GTP sing 252 n n C2' C1' GTP sing 253 n n C2' H2' GTP sing 254 n n O2' HO2' GTP sing 255 n n C1' N9 GTP sing 256 n n C1' H1' GTP sing 257 n n N9 C8 GTP sing 258 n y N9 C4 GTP sing 259 n y C8 N7 GTP doub 260 n y C8 H8 GTP sing 261 n n N7 C5 GTP sing 262 n y C5 C6 GTP sing 263 n n C5 C4 GTP doub 264 n y C6 O6 GTP doub 265 n n C6 N1 GTP sing 266 n n N1 C2 GTP sing 267 n n N1 HN1 GTP sing 268 n n C2 N2 GTP sing 269 n n C2 N3 GTP doub 270 n n N2 HN21 GTP sing 271 n n N2 HN22 GTP sing 272 n n N3 C4 GTP sing 273 n n # _atom_sites.entry_id 5MM7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG K 1 500 500 MG MG . E 5 ANP K 1 501 501 ANP ANP . F 6 GTP A 1 501 501 GTP GTP . G 4 MG A 1 502 502 MG MG . H 7 TA1 B 1 501 502 TA1 TA1 . I 8 GDP B 1 502 501 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 6 45.634 35.661 50.96 1 229.5 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . F 6 44.731 36.823 51.286 1 229.5 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . F 6 46.926 35.767 51.729 1 229.5 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . F 6 44.923 34.373 51.293 1 229.5 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . F 6 45.945 35.655 49.392 1 229.5 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . F 6 44.912 34.92 48.412 1 229.5 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . F 6 45.179 35.392 47.004 1 229.5 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . F 6 45.046 33.425 48.545 1 229.5 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . F 6 43.47 35.392 48.954 1 229.5 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . F 6 42.179 35.386 47.993 1 229.5 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . F 6 42.451 34.599 46.743 1 229.5 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . F 6 41.002 34.814 48.742 1 229.5 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . F 6 41.893 36.925 47.629 1 229.5 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . F 6 40.984 37.69 48.383 1 229.5 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . F 6 39.933 38.253 47.441 1 229.5 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . F 6 39.719 37.355 46.375 1 229.5 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . F 6 38.59 38.43 48.12 1 229.5 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . F 6 38.421 39.767 48.526 1 229.5 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . F 6 37.575 38.074 47.056 1 229.5 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . F 6 37.017 39.252 46.526 1 229.5 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . F 6 38.361 37.35 45.979 1 229.5 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . F 6 37.923 35.951 45.883 1 229.5 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . F 6 38.399 34.919 46.644 1 229.5 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . F 6 37.778 33.784 46.259 1 229.5 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . F 6 36.92 34.077 45.262 1 229.5 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . F 6 36.053 33.29 44.524 1 229.5 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . F 6 35.979 32.086 44.738 1 229.5 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . F 6 35.278 33.86 43.545 1 229.5 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . F 6 35.371 35.21 43.305 1 229.5 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . F 6 34.62 35.75 42.353 1 229.5 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . F 6 36.235 35.994 44.043 1 229.5 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . F 6 37.002 35.436 45.008 1 229.5 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #