data_5MN2 # _model_server_result.job_id Fh-Ju5zy-thuRZDG4G_-4A _model_server_result.datetime_utc '2024-11-14 06:49:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":405}' # _entry.id 5MN2 # _exptl.entry_id 5MN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.09 _cell.angle_gamma 90 _cell.entry_id 5MN2 _cell.length_a 64.985 _cell.length_b 59.925 _cell.length_c 100.001 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,O,P,S 1 1 B,C,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 110 A CYS 110 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 29 B CYS 29 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 110 B CYS 110 1_555 B SG CYS 154 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 38 A ASN 38 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 45 A ASN 45 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 74 A ASN 74 1_555 H C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 162 A ASN 162 1_555 F C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 169 A ASN 169 1_555 I C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 B ND2 ASN 45 B ASN 45 1_555 L C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 B ND2 ASN 74 B ASN 74 1_555 M C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5MN2 _atom_sites.fract_transf_matrix[1][1] 0.015388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003297 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 401 401 NAG NAG . F 3 NAG A 1 402 402 NAG NAG . G 3 NAG A 1 403 403 NAG NAG . H 3 NAG A 1 404 404 NAG NAG . I 3 NAG A 1 405 405 NAG NAG . J 4 PEG A 1 406 503 PEG PEG . K 5 GOL A 1 407 502 GOL GOL . L 3 NAG B 1 401 401 NAG NAG . M 3 NAG B 1 402 402 NAG NAG . N 4 PEG B 1 403 501 PEG PEG . O 6 PG4 D 1 501 501 PG4 PG4 . P 7 HOH A 1 501 92 HOH HOH . P 7 HOH A 2 502 40 HOH HOH . P 7 HOH A 3 503 36 HOH HOH . P 7 HOH A 4 504 7 HOH HOH . P 7 HOH A 5 505 11 HOH HOH . P 7 HOH A 6 506 3 HOH HOH . P 7 HOH A 7 507 53 HOH HOH . P 7 HOH A 8 508 49 HOH HOH . P 7 HOH A 9 509 73 HOH HOH . P 7 HOH A 10 510 21 HOH HOH . P 7 HOH A 11 511 148 HOH HOH . P 7 HOH A 12 512 170 HOH HOH . P 7 HOH A 13 513 6 HOH HOH . P 7 HOH A 14 514 17 HOH HOH . P 7 HOH A 15 515 5 HOH HOH . P 7 HOH A 16 516 82 HOH HOH . P 7 HOH A 17 517 2 HOH HOH . P 7 HOH A 18 518 141 HOH HOH . P 7 HOH A 19 519 66 HOH HOH . P 7 HOH A 20 520 1 HOH HOH . P 7 HOH A 21 521 104 HOH HOH . P 7 HOH A 22 522 30 HOH HOH . P 7 HOH A 23 523 59 HOH HOH . P 7 HOH A 24 524 74 HOH HOH . P 7 HOH A 25 525 110 HOH HOH . P 7 HOH A 26 526 63 HOH HOH . P 7 HOH A 27 527 45 HOH HOH . P 7 HOH A 28 528 4 HOH HOH . P 7 HOH A 29 529 35 HOH HOH . P 7 HOH A 30 530 93 HOH HOH . P 7 HOH A 31 531 9 HOH HOH . P 7 HOH A 32 532 10 HOH HOH . P 7 HOH A 33 533 20 HOH HOH . P 7 HOH A 34 534 8 HOH HOH . P 7 HOH A 35 535 24 HOH HOH . P 7 HOH A 36 536 48 HOH HOH . P 7 HOH A 37 537 12 HOH HOH . P 7 HOH A 38 538 183 HOH HOH . P 7 HOH A 39 539 18 HOH HOH . P 7 HOH A 40 540 70 HOH HOH . P 7 HOH A 41 541 38 HOH HOH . P 7 HOH A 42 542 126 HOH HOH . P 7 HOH A 43 543 194 HOH HOH . P 7 HOH A 44 544 107 HOH HOH . P 7 HOH A 45 545 98 HOH HOH . P 7 HOH A 46 546 78 HOH HOH . P 7 HOH A 47 547 149 HOH HOH . P 7 HOH A 48 548 161 HOH HOH . P 7 HOH A 49 549 179 HOH HOH . P 7 HOH A 50 550 152 HOH HOH . P 7 HOH A 51 551 153 HOH HOH . P 7 HOH A 52 552 88 HOH HOH . P 7 HOH A 53 553 46 HOH HOH . P 7 HOH A 54 554 175 HOH HOH . P 7 HOH A 55 555 193 HOH HOH . P 7 HOH A 56 556 41 HOH HOH . P 7 HOH A 57 557 90 HOH HOH . P 7 HOH A 58 558 102 HOH HOH . P 7 HOH A 59 559 83 HOH HOH . P 7 HOH A 60 560 160 HOH HOH . P 7 HOH A 61 561 162 HOH HOH . P 7 HOH A 62 562 184 HOH HOH . P 7 HOH A 63 563 124 HOH HOH . P 7 HOH A 64 564 69 HOH HOH . P 7 HOH A 65 565 186 HOH HOH . P 7 HOH A 66 566 164 HOH HOH . P 7 HOH A 67 567 143 HOH HOH . P 7 HOH A 68 568 128 HOH HOH . P 7 HOH A 69 569 174 HOH HOH . P 7 HOH A 70 570 159 HOH HOH . P 7 HOH A 71 571 64 HOH HOH . P 7 HOH A 72 572 125 HOH HOH . P 7 HOH A 73 573 95 HOH HOH . P 7 HOH A 74 574 195 HOH HOH . P 7 HOH A 75 575 177 HOH HOH . P 7 HOH A 76 576 182 HOH HOH . P 7 HOH A 77 577 44 HOH HOH . Q 7 HOH B 1 501 134 HOH HOH . Q 7 HOH B 2 502 60 HOH HOH . Q 7 HOH B 3 503 157 HOH HOH . Q 7 HOH B 4 504 158 HOH HOH . Q 7 HOH B 5 505 131 HOH HOH . Q 7 HOH B 6 506 154 HOH HOH . Q 7 HOH B 7 507 120 HOH HOH . Q 7 HOH B 8 508 142 HOH HOH . Q 7 HOH B 9 509 191 HOH HOH . Q 7 HOH B 10 510 155 HOH HOH . R 7 HOH C 1 201 56 HOH HOH . R 7 HOH C 2 202 118 HOH HOH . R 7 HOH C 3 203 185 HOH HOH . R 7 HOH C 4 204 43 HOH HOH . R 7 HOH C 5 205 34 HOH HOH . R 7 HOH C 6 206 39 HOH HOH . R 7 HOH C 7 207 190 HOH HOH . R 7 HOH C 8 208 105 HOH HOH . R 7 HOH C 9 209 14 HOH HOH . R 7 HOH C 10 210 135 HOH HOH . R 7 HOH C 11 211 132 HOH HOH . R 7 HOH C 12 212 80 HOH HOH . R 7 HOH C 13 213 79 HOH HOH . R 7 HOH C 14 214 33 HOH HOH . R 7 HOH C 15 215 68 HOH HOH . R 7 HOH C 16 216 31 HOH HOH . R 7 HOH C 17 217 22 HOH HOH . R 7 HOH C 18 218 32 HOH HOH . R 7 HOH C 19 219 181 HOH HOH . R 7 HOH C 20 220 54 HOH HOH . R 7 HOH C 21 221 103 HOH HOH . R 7 HOH C 22 222 67 HOH HOH . R 7 HOH C 23 223 123 HOH HOH . R 7 HOH C 24 224 97 HOH HOH . R 7 HOH C 25 225 156 HOH HOH . R 7 HOH C 26 226 84 HOH HOH . R 7 HOH C 27 227 86 HOH HOH . R 7 HOH C 28 228 176 HOH HOH . R 7 HOH C 29 229 168 HOH HOH . R 7 HOH C 30 230 166 HOH HOH . R 7 HOH C 31 231 116 HOH HOH . R 7 HOH C 32 232 189 HOH HOH . S 7 HOH D 1 601 28 HOH HOH . S 7 HOH D 2 602 171 HOH HOH . S 7 HOH D 3 603 15 HOH HOH . S 7 HOH D 4 604 52 HOH HOH . S 7 HOH D 5 605 26 HOH HOH . S 7 HOH D 6 606 187 HOH HOH . S 7 HOH D 7 607 71 HOH HOH . S 7 HOH D 8 608 55 HOH HOH . S 7 HOH D 9 609 108 HOH HOH . S 7 HOH D 10 610 16 HOH HOH . S 7 HOH D 11 611 23 HOH HOH . S 7 HOH D 12 612 13 HOH HOH . S 7 HOH D 13 613 25 HOH HOH . S 7 HOH D 14 614 146 HOH HOH . S 7 HOH D 15 615 37 HOH HOH . S 7 HOH D 16 616 99 HOH HOH . S 7 HOH D 17 617 137 HOH HOH . S 7 HOH D 18 618 29 HOH HOH . S 7 HOH D 19 619 57 HOH HOH . S 7 HOH D 20 620 173 HOH HOH . S 7 HOH D 21 621 101 HOH HOH . S 7 HOH D 22 622 147 HOH HOH . S 7 HOH D 23 623 119 HOH HOH . S 7 HOH D 24 624 144 HOH HOH . S 7 HOH D 25 625 172 HOH HOH . S 7 HOH D 26 626 163 HOH HOH . S 7 HOH D 27 627 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 3 13.278 4.168 -28.092 1 108.65 ? C1 NAG 405 A 1 HETATM 2 C C2 NAG . . . I 3 12.387 5.325 -27.649 1 108.6 ? C2 NAG 405 A 1 HETATM 3 C C3 NAG . . . I 3 12.91 5.92 -26.344 1 112.65 ? C3 NAG 405 A 1 HETATM 4 C C4 NAG . . . I 3 13.082 4.834 -25.29 1 115.65 ? C4 NAG 405 A 1 HETATM 5 C C5 NAG . . . I 3 13.923 3.683 -25.836 1 107.09 ? C5 NAG 405 A 1 HETATM 6 C C6 NAG . . . I 3 14.004 2.508 -24.889 1 93.46 ? C6 NAG 405 A 1 HETATM 7 C C7 NAG . . . I 3 11.177 6.663 -29.316 1 100.95 ? C7 NAG 405 A 1 HETATM 8 C C8 NAG . . . I 3 11.282 7.745 -30.348 1 103.34 ? C8 NAG 405 A 1 HETATM 9 N N2 NAG . . . I 3 12.31 6.348 -28.68 1 95.53 ? N2 NAG 405 A 1 HETATM 10 O O3 NAG . . . I 3 11.997 6.907 -25.877 1 101.11 ? O3 NAG 405 A 1 HETATM 11 O O4 NAG . . . I 3 13.724 5.376 -24.141 1 113.1 ? O4 NAG 405 A 1 HETATM 12 O O5 NAG . . . I 3 13.345 3.19 -27.054 1 105.87 ? O5 NAG 405 A 1 HETATM 13 O O6 NAG . . . I 3 15.159 2.58 -24.064 1 104.83 ? O6 NAG 405 A 1 HETATM 14 O O7 NAG . . . I 3 10.115 6.1 -29.068 1 101.56 ? O7 NAG 405 A 1 HETATM 15 H H2 NAG . . . I 3 11.49 4.977 -27.486 1 130.22 ? H2 NAG 405 A 1 HETATM 16 H H3 NAG . . . I 3 13.775 6.341 -26.51 1 135.07 ? H3 NAG 405 A 1 HETATM 17 H H4 NAG . . . I 3 12.203 4.494 -25.034 1 138.68 ? H4 NAG 405 A 1 HETATM 18 H H5 NAG . . . I 3 14.825 4.007 -26.02 1 128.41 ? H5 NAG 405 A 1 HETATM 19 H H61 NAG . . . I 3 14.035 1.682 -25.408 1 112.05 ? H61 NAG 405 A 1 HETATM 20 H H62 NAG . . . I 3 13.209 2.499 -24.323 1 112.05 ? H62 NAG 405 A 1 HETATM 21 H H81 NAG . . . I 3 10.406 7.898 -30.751 1 123.9 ? H81 NAG 405 A 1 HETATM 22 H H82 NAG . . . I 3 11.916 7.474 -31.04 1 123.9 ? H82 NAG 405 A 1 HETATM 23 H H83 NAG . . . I 3 11.595 8.568 -29.927 1 123.9 ? H83 NAG 405 A 1 HETATM 24 H HN2 NAG . . . I 3 13.072 6.798 -28.902 1 114.53 ? HN2 NAG 405 A 1 HETATM 25 H HO3 NAG . . . I 3 12.33 7.3 -25.154 1 121.23 ? HO3 NAG 405 A 1 HETATM 26 H HO4 NAG . . . I 3 13.747 4.763 -23.498 1 135.61 ? HO4 NAG 405 A 1 HETATM 27 H HO6 NAG . . . I 3 15.85 2.222 -24.49 1 125.69 ? HO6 NAG 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #