data_5MN7 # _model_server_result.job_id 7t_DGrvEfTK5blr85ZxRgg _model_server_result.datetime_utc '2025-07-16 19:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 5MN7 # _exptl.entry_id 5MN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MN7 _cell.length_a 116.091 _cell.length_b 130.015 _cell.length_c 134.125 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1,2 B,E,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 35 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 46 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 5MN7 _atom_sites.fract_transf_matrix[1][1] 0.008614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 701 701 MG MG . D 3 GTP A 1 702 703 GTP GTP . E 2 MG B 1 401 702 MG MG . F 3 GTP B 1 402 703 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 3 -24.026 37.377 10.804 1 79.81 ? PG GTP 402 B 1 HETATM 2 O O1G GTP . . . F 3 -25.024 38.509 10.745 1 77.93 ? O1G GTP 402 B 1 HETATM 3 O O2G GTP . . . F 3 -22.668 37.908 11.2 1 85.27 ? O2G GTP 402 B 1 HETATM 4 O O3G GTP . . . F 3 -24.476 36.35 11.815 1 77.94 ? O3G GTP 402 B 1 HETATM 5 O O3B GTP . . . F 3 -23.933 36.697 9.348 1 80.43 ? O3B GTP 402 B 1 HETATM 6 P PB GTP . . . F 3 -22.845 37.231 8.291 1 79.67 ? PB GTP 402 B 1 HETATM 7 O O1B GTP . . . F 3 -23.186 36.723 6.91 1 84.04 ? O1B GTP 402 B 1 HETATM 8 O O2B GTP . . . F 3 -22.755 38.738 8.311 1 73.41 ? O2B GTP 402 B 1 HETATM 9 O O3A GTP . . . F 3 -21.468 36.56 8.786 1 74.75 ? O3A GTP 402 B 1 HETATM 10 P PA GTP . . . F 3 -20.08 36.964 8.079 1 77.02 ? PA GTP 402 B 1 HETATM 11 O O1A GTP . . . F 3 -20.327 37.661 6.763 1 79.71 ? O1A GTP 402 B 1 HETATM 12 O O2A GTP . . . F 3 -19.282 37.84 9.015 1 79.46 ? O2A GTP 402 B 1 HETATM 13 O O5' GTP . . . F 3 -19.294 35.579 7.851 1 63.1 ? O5' GTP 402 B 1 HETATM 14 C C5' GTP . . . F 3 -19.742 34.658 6.882 1 61.8 ? C5' GTP 402 B 1 HETATM 15 C C4' GTP . . . F 3 -18.593 33.728 6.522 1 66.51 ? C4' GTP 402 B 1 HETATM 16 O O4' GTP . . . F 3 -17.754 34.397 5.601 1 65.17 ? O4' GTP 402 B 1 HETATM 17 C C3' GTP . . . F 3 -17.746 33.388 7.735 1 61.51 ? C3' GTP 402 B 1 HETATM 18 O O3' GTP . . . F 3 -18.007 32.074 8.169 1 62.06 ? O3' GTP 402 B 1 HETATM 19 C C2' GTP . . . F 3 -16.315 33.51 7.259 1 55.21 ? C2' GTP 402 B 1 HETATM 20 O O2' GTP . . . F 3 -15.786 32.232 7.004 1 60.07 ? O2' GTP 402 B 1 HETATM 21 C C1' GTP . . . F 3 -16.391 34.292 5.96 1 54.45 ? C1' GTP 402 B 1 HETATM 22 N N9 GTP . . . F 3 -15.857 35.652 6.151 1 56.51 ? N9 GTP 402 B 1 HETATM 23 C C8 GTP . . . F 3 -15.753 36.323 7.341 1 62.84 ? C8 GTP 402 B 1 HETATM 24 N N7 GTP . . . F 3 -15.218 37.543 7.103 1 59.33 ? N7 GTP 402 B 1 HETATM 25 C C5 GTP . . . F 3 -14.978 37.66 5.779 1 61.44 ? C5 GTP 402 B 1 HETATM 26 C C6 GTP . . . F 3 -14.444 38.687 5.011 1 62.77 ? C6 GTP 402 B 1 HETATM 27 O O6 GTP . . . F 3 -14.089 39.737 5.543 1 65.88 ? O6 GTP 402 B 1 HETATM 28 N N1 GTP . . . F 3 -14.315 38.522 3.648 1 56.34 ? N1 GTP 402 B 1 HETATM 29 C C2 GTP . . . F 3 -14.715 37.34 3.057 1 57.28 ? C2 GTP 402 B 1 HETATM 30 N N2 GTP . . . F 3 -14.591 37.179 1.743 1 57.86 ? N2 GTP 402 B 1 HETATM 31 N N3 GTP . . . F 3 -15.245 36.324 3.827 1 58.68 ? N3 GTP 402 B 1 HETATM 32 C C4 GTP . . . F 3 -15.376 36.479 5.167 1 58.23 ? C4 GTP 402 B 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #