data_5MN7 # _model_server_result.job_id C1_tbL3mGmII-uX987xu9Q _model_server_result.datetime_utc '2025-07-13 10:43:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5MN7 # _exptl.entry_id 5MN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MN7 _cell.length_a 116.091 _cell.length_b 130.015 _cell.length_c 134.125 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1,2 B,E,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 35 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 46 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 5MN7 _atom_sites.fract_transf_matrix[1][1] 0.008614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 701 701 MG MG . D 3 GTP A 1 702 703 GTP GTP . E 2 MG B 1 401 702 MG MG . F 3 GTP B 1 402 703 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 3 24.269 10.52 37.912 1 73.1 ? PG GTP 702 A 1 HETATM 2 O O1G GTP . . . D 3 24.624 10.369 36.454 1 57.75 ? O1G GTP 702 A 1 HETATM 3 O O2G GTP . . . D 3 23.986 11.971 38.218 1 83.65 ? O2G GTP 702 A 1 HETATM 4 O O3G GTP . . . D 3 25.415 10.045 38.774 1 65.18 ? O3G GTP 702 A 1 HETATM 5 O O3B GTP . . . D 3 22.969 9.634 38.253 1 76.88 ? O3B GTP 702 A 1 HETATM 6 P PB GTP . . . D 3 22.813 8.13 37.698 1 70.44 ? PB GTP 702 A 1 HETATM 7 O O1B GTP . . . D 3 24.072 7.689 36.993 1 62.07 ? O1B GTP 702 A 1 HETATM 8 O O2B GTP . . . D 3 22.459 7.178 38.811 1 66.67 ? O2B GTP 702 A 1 HETATM 9 O O3A GTP . . . D 3 21.62 8.208 36.622 1 68.12 ? O3A GTP 702 A 1 HETATM 10 P PA GTP . . . D 3 20.214 7.487 36.927 1 71.01 ? PA GTP 702 A 1 HETATM 11 O O1A GTP . . . D 3 20.392 5.994 37.065 1 76.07 ? O1A GTP 702 A 1 HETATM 12 O O2A GTP . . . D 3 19.586 8.078 38.166 1 58.7 ? O2A GTP 702 A 1 HETATM 13 O O5' GTP . . . D 3 19.319 7.841 35.639 1 70.28 ? O5' GTP 702 A 1 HETATM 14 C C5' GTP . . . D 3 19.735 7.373 34.376 1 61.83 ? C5' GTP 702 A 1 HETATM 15 C C4' GTP . . . D 3 18.575 6.651 33.708 1 59 ? C4' GTP 702 A 1 HETATM 16 O O4' GTP . . . D 3 18.026 5.716 34.617 1 51.6 ? O4' GTP 702 A 1 HETATM 17 C C3' GTP . . . D 3 17.453 7.596 33.321 1 60 ? C3' GTP 702 A 1 HETATM 18 O O3' GTP . . . D 3 17.527 7.918 31.953 1 69.15 ? O3' GTP 702 A 1 HETATM 19 C C2' GTP . . . D 3 16.188 6.816 33.611 1 55.92 ? C2' GTP 702 A 1 HETATM 20 O O2' GTP . . . D 3 15.645 6.315 32.412 1 59 ? O2' GTP 702 A 1 HETATM 21 C C1' GTP . . . D 3 16.617 5.665 34.507 1 52.05 ? C1' GTP 702 A 1 HETATM 22 N N9 GTP . . . D 3 16.013 5.826 35.841 1 45.84 ? N9 GTP 702 A 1 HETATM 23 C C8 GTP . . . D 3 15.899 6.999 36.54 1 56.21 ? C8 GTP 702 A 1 HETATM 24 N N7 GTP . . . D 3 15.289 6.74 37.719 1 61.15 ? N7 GTP 702 A 1 HETATM 25 C C5 GTP . . . D 3 15.011 5.42 37.783 1 55.74 ? C5 GTP 702 A 1 HETATM 26 C C6 GTP . . . D 3 14.402 4.639 38.756 1 58.5 ? C6 GTP 702 A 1 HETATM 27 O O6 GTP . . . D 3 14.001 5.152 39.8 1 57.76 ? O6 GTP 702 A 1 HETATM 28 N N1 GTP . . . D 3 14.249 3.285 38.545 1 61.04 ? N1 GTP 702 A 1 HETATM 29 C C2 GTP . . . D 3 14.702 2.716 37.371 1 64.45 ? C2 GTP 702 A 1 HETATM 30 N N2 GTP . . . D 3 14.554 1.41 37.167 1 64.3 ? N2 GTP 702 A 1 HETATM 31 N N3 GTP . . . D 3 15.307 3.5 36.409 1 58.11 ? N3 GTP 702 A 1 HETATM 32 C C4 GTP . . . D 3 15.46 4.831 36.609 1 50.06 ? C4 GTP 702 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #