data_5MN8 # _model_server_result.job_id t3Im86QADeGODcmYKIHM6A _model_server_result.datetime_utc '2025-07-10 02:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5MN8 # _exptl.entry_id 5MN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MN8 _cell.length_a 69.781 _cell.length_b 69.781 _cell.length_c 295.465 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 5MN8 _atom_sites.fract_transf_matrix[1][1] 0.014331 _atom_sites.fract_transf_matrix[1][2] 0.008274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP B 1 401 998 GTP GTP . D 2 GTP A 1 401 998 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 2 105.129 106.701 590.864 1 130.32 ? PG GTP 401 B 1 HETATM 2 O O1G GTP . . . C 2 106.08 106.687 589.691 1 122.13 ? O1G GTP 401 B 1 HETATM 3 O O2G GTP . . . C 2 103.703 106.783 590.373 1 115.68 ? O2G GTP 401 B 1 HETATM 4 O O3G GTP . . . C 2 105.327 105.44 591.67 1 125.52 ? O3G GTP 401 B 1 HETATM 5 O O3B GTP . . . C 2 105.448 107.987 591.781 1 135.15 ? O3B GTP 401 B 1 HETATM 6 P PB GTP . . . C 2 104.281 108.838 592.495 1 136.77 ? PB GTP 401 B 1 HETATM 7 O O1B GTP . . . C 2 103.265 109.291 591.474 1 117.81 ? O1B GTP 401 B 1 HETATM 8 O O2B GTP . . . C 2 104.893 110.017 593.211 1 113.34 ? O2B GTP 401 B 1 HETATM 9 O O3A GTP . . . C 2 103.59 107.836 593.552 1 127.38 ? O3A GTP 401 B 1 HETATM 10 P PA GTP . . . C 2 102.494 108.393 594.595 1 125.27 ? PA GTP 401 B 1 HETATM 11 O O1A GTP . . . C 2 101.104 108.26 594.022 1 108.9 ? O1A GTP 401 B 1 HETATM 12 O O2A GTP . . . C 2 102.794 109.825 594.972 1 126.75 ? O2A GTP 401 B 1 HETATM 13 O O5' GTP . . . C 2 102.653 107.457 595.894 1 130.05 ? O5' GTP 401 B 1 HETATM 14 C C5' GTP . . . C 2 103.893 107.414 596.564 1 131.38 ? C5' GTP 401 B 1 HETATM 15 C C4' GTP . . . C 2 103.684 107.511 598.071 1 116.36 ? C4' GTP 401 B 1 HETATM 16 O O4' GTP . . . C 2 102.745 108.53 598.358 1 107.99 ? O4' GTP 401 B 1 HETATM 17 C C3' GTP . . . C 2 103.151 106.233 598.693 1 120.64 ? C3' GTP 401 B 1 HETATM 18 O O3' GTP . . . C 2 104.201 105.49 599.265 1 125.88 ? O3' GTP 401 B 1 HETATM 19 C C2' GTP . . . C 2 102.203 106.712 599.773 1 124.93 ? C2' GTP 401 B 1 HETATM 20 O O2' GTP . . . C 2 102.833 106.658 601.031 1 134.79 ? O2' GTP 401 B 1 HETATM 21 C C1' GTP . . . C 2 101.897 108.159 599.427 1 116.32 ? C1' GTP 401 B 1 HETATM 22 N N9 GTP . . . C 2 100.498 108.274 598.98 1 111.99 ? N9 GTP 401 B 1 HETATM 23 C C8 GTP . . . C 2 99.817 107.35 598.233 1 116.41 ? C8 GTP 401 B 1 HETATM 24 N N7 GTP . . . C 2 98.563 107.809 598.02 1 122.28 ? N7 GTP 401 B 1 HETATM 25 C C5 GTP . . . C 2 98.431 109.013 598.618 1 122.25 ? C5 GTP 401 B 1 HETATM 26 C C6 GTP . . . C 2 97.369 109.908 598.709 1 129.23 ? C6 GTP 401 B 1 HETATM 27 O O6 GTP . . . C 2 96.287 109.657 598.179 1 130.39 ? O6 GTP 401 B 1 HETATM 28 N N1 GTP . . . C 2 97.53 111.086 599.404 1 130.21 ? N1 GTP 401 B 1 HETATM 29 C C2 GTP . . . C 2 98.74 111.371 600 1 131.6 ? C2 GTP 401 B 1 HETATM 30 N N2 GTP . . . C 2 98.89 112.51 600.668 1 136.35 ? N2 GTP 401 B 1 HETATM 31 N N3 GTP . . . C 2 99.791 110.481 599.907 1 130.3 ? N3 GTP 401 B 1 HETATM 32 C C4 GTP . . . C 2 99.642 109.319 599.227 1 121.72 ? C4 GTP 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #