data_5MN8 # _model_server_result.job_id YvuqN49KFir4frjJEUma4A _model_server_result.datetime_utc '2025-07-09 16:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5MN8 # _exptl.entry_id 5MN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5MN8 _cell.length_a 69.781 _cell.length_b 69.781 _cell.length_c 295.465 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 5MN8 _atom_sites.fract_transf_matrix[1][1] 0.014331 _atom_sites.fract_transf_matrix[1][2] 0.008274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP B 1 401 998 GTP GTP . D 2 GTP A 1 401 998 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 2 131.536 89.222 608.375 1 133.62 ? PG GTP 401 A 1 HETATM 2 O O1G GTP . . . D 2 132.485 89.457 607.225 1 113.77 ? O1G GTP 401 A 1 HETATM 3 O O2G GTP . . . D 2 130.113 89.442 607.921 1 106.04 ? O2G GTP 401 A 1 HETATM 4 O O3G GTP . . . D 2 131.7 87.807 608.876 1 130.71 ? O3G GTP 401 A 1 HETATM 5 O O3B GTP . . . D 2 131.874 90.259 609.56 1 128.67 ? O3B GTP 401 A 1 HETATM 6 P PB GTP . . . D 2 130.741 90.743 610.597 1 123.92 ? PB GTP 401 A 1 HETATM 7 O O1B GTP . . . D 2 129.609 91.411 609.855 1 121.63 ? O1B GTP 401 A 1 HETATM 8 O O2B GTP . . . D 2 131.343 91.672 611.624 1 111.74 ? O2B GTP 401 A 1 HETATM 9 O O3A GTP . . . D 2 130.202 89.403 611.307 1 109.15 ? O3A GTP 401 A 1 HETATM 10 P PA GTP . . . D 2 129.024 89.515 612.4 1 123.76 ? PA GTP 401 A 1 HETATM 11 O O1A GTP . . . D 2 127.709 89.062 611.814 1 100.61 ? O1A GTP 401 A 1 HETATM 12 O O2A GTP . . . D 2 128.936 90.933 612.916 1 124.08 ? O2A GTP 401 A 1 HETATM 13 O O5' GTP . . . D 2 129.461 88.537 613.599 1 132.59 ? O5' GTP 401 A 1 HETATM 14 C C5' GTP . . . D 2 130.622 88.835 614.337 1 129.66 ? C5' GTP 401 A 1 HETATM 15 C C4' GTP . . . D 2 130.399 88.562 615.82 1 116.01 ? C4' GTP 401 A 1 HETATM 16 O O4' GTP . . . D 2 129.23 89.228 616.261 1 105.97 ? O4' GTP 401 A 1 HETATM 17 C C3' GTP . . . D 2 130.225 87.091 616.155 1 123.29 ? C3' GTP 401 A 1 HETATM 18 O O3' GTP . . . D 2 131.443 86.528 616.58 1 127.32 ? O3' GTP 401 A 1 HETATM 19 C C2' GTP . . . D 2 129.224 87.099 617.29 1 117.89 ? C2' GTP 401 A 1 HETATM 20 O O2' GTP . . . D 2 129.898 87.042 618.525 1 122.48 ? O2' GTP 401 A 1 HETATM 21 C C1' GTP . . . D 2 128.503 88.431 617.175 1 117.14 ? C1' GTP 401 A 1 HETATM 22 N N9 GTP . . . D 2 127.153 88.207 616.628 1 120.27 ? N9 GTP 401 A 1 HETATM 23 C C8 GTP . . . D 2 126.817 87.247 615.711 1 126.4 ? C8 GTP 401 A 1 HETATM 24 N N7 GTP . . . D 2 125.497 87.347 615.443 1 129.12 ? N7 GTP 401 A 1 HETATM 25 C C5 GTP . . . D 2 124.982 88.358 616.175 1 121.34 ? C5 GTP 401 A 1 HETATM 26 C C6 GTP . . . D 2 123.697 88.878 616.277 1 123.34 ? C6 GTP 401 A 1 HETATM 27 O O6 GTP . . . D 2 122.774 88.397 615.619 1 119.81 ? O6 GTP 401 A 1 HETATM 28 N N1 GTP . . . D 2 123.457 89.937 617.126 1 133.04 ? N1 GTP 401 A 1 HETATM 29 C C2 GTP . . . D 2 124.493 90.473 617.864 1 134.65 ? C2 GTP 401 A 1 HETATM 30 N N2 GTP . . . D 2 124.258 91.496 618.681 1 128.22 ? N2 GTP 401 A 1 HETATM 31 N N3 GTP . . . D 2 125.767 89.953 617.757 1 129.11 ? N3 GTP 401 A 1 HETATM 32 C C4 GTP . . . D 2 126.012 88.911 616.926 1 122.12 ? C4 GTP 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #