data_5MNB # _model_server_result.job_id L6gL8SfcP0xvKeETBXg1fA _model_server_result.datetime_utc '2024-11-17 12:45:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5mnb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5MNB # _exptl.entry_id 5MNB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 95.122 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINOPYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5MNB _cell.length_a 54.989 _cell.length_b 58.537 _cell.length_c 67.618 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 B CA CA . A CA 301 1_555 F O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 B CA CA . A CA 301 1_555 F O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C5 H7 N2 1' _chem_comp.formula_weight 95.122 _chem_comp.id 2AP _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINOPYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 2AP sing 1 n y N1 C6 2AP doub 2 n y N1 HN1 2AP sing 3 n n C2 C3 2AP doub 4 n y C2 N 2AP sing 5 n n C3 C4 2AP sing 6 n y C3 H3 2AP sing 7 n n C4 C5 2AP doub 8 n y C4 H4 2AP sing 9 n n C5 C6 2AP sing 10 n y C5 H5 2AP sing 11 n n C6 H6 2AP sing 12 n n N HN1A 2AP sing 13 n n N HN2 2AP sing 14 n n # _atom_sites.entry_id 5MNB _atom_sites.fract_transf_matrix[1][1] 0.018185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 2AP A 1 304 1 2AP 2AP . F 5 HOH A 1 401 133 HOH HOH . F 5 HOH A 2 402 195 HOH HOH . F 5 HOH A 3 403 179 HOH HOH . F 5 HOH A 4 404 79 HOH HOH . F 5 HOH A 5 405 163 HOH HOH . F 5 HOH A 6 406 78 HOH HOH . F 5 HOH A 7 407 73 HOH HOH . F 5 HOH A 8 408 65 HOH HOH . F 5 HOH A 9 409 167 HOH HOH . F 5 HOH A 10 410 145 HOH HOH . F 5 HOH A 11 411 44 HOH HOH . F 5 HOH A 12 412 172 HOH HOH . F 5 HOH A 13 413 92 HOH HOH . F 5 HOH A 14 414 150 HOH HOH . F 5 HOH A 15 415 102 HOH HOH . F 5 HOH A 16 416 149 HOH HOH . F 5 HOH A 17 417 7 HOH HOH . F 5 HOH A 18 418 131 HOH HOH . F 5 HOH A 19 419 188 HOH HOH . F 5 HOH A 20 420 77 HOH HOH . F 5 HOH A 21 421 96 HOH HOH . F 5 HOH A 22 422 35 HOH HOH . F 5 HOH A 23 423 119 HOH HOH . F 5 HOH A 24 424 168 HOH HOH . F 5 HOH A 25 425 53 HOH HOH . F 5 HOH A 26 426 22 HOH HOH . F 5 HOH A 27 427 47 HOH HOH . F 5 HOH A 28 428 121 HOH HOH . F 5 HOH A 29 429 37 HOH HOH . F 5 HOH A 30 430 139 HOH HOH . F 5 HOH A 31 431 36 HOH HOH . F 5 HOH A 32 432 101 HOH HOH . F 5 HOH A 33 433 146 HOH HOH . F 5 HOH A 34 434 27 HOH HOH . F 5 HOH A 35 435 61 HOH HOH . F 5 HOH A 36 436 38 HOH HOH . F 5 HOH A 37 437 166 HOH HOH . F 5 HOH A 38 438 17 HOH HOH . F 5 HOH A 39 439 74 HOH HOH . F 5 HOH A 40 440 117 HOH HOH . F 5 HOH A 41 441 76 HOH HOH . F 5 HOH A 42 442 110 HOH HOH . F 5 HOH A 43 443 164 HOH HOH . F 5 HOH A 44 444 59 HOH HOH . F 5 HOH A 45 445 68 HOH HOH . F 5 HOH A 46 446 148 HOH HOH . F 5 HOH A 47 447 67 HOH HOH . F 5 HOH A 48 448 31 HOH HOH . F 5 HOH A 49 449 111 HOH HOH . F 5 HOH A 50 450 97 HOH HOH . F 5 HOH A 51 451 152 HOH HOH . F 5 HOH A 52 452 114 HOH HOH . F 5 HOH A 53 453 8 HOH HOH . F 5 HOH A 54 454 190 HOH HOH . F 5 HOH A 55 455 116 HOH HOH . F 5 HOH A 56 456 2 HOH HOH . F 5 HOH A 57 457 42 HOH HOH . F 5 HOH A 58 458 192 HOH HOH . F 5 HOH A 59 459 155 HOH HOH . F 5 HOH A 60 460 161 HOH HOH . F 5 HOH A 61 461 55 HOH HOH . F 5 HOH A 62 462 181 HOH HOH . F 5 HOH A 63 463 81 HOH HOH . F 5 HOH A 64 464 23 HOH HOH . F 5 HOH A 65 465 165 HOH HOH . F 5 HOH A 66 466 15 HOH HOH . F 5 HOH A 67 467 113 HOH HOH . F 5 HOH A 68 468 48 HOH HOH . F 5 HOH A 69 469 10 HOH HOH . F 5 HOH A 70 470 91 HOH HOH . F 5 HOH A 71 471 40 HOH HOH . F 5 HOH A 72 472 160 HOH HOH . F 5 HOH A 73 473 180 HOH HOH . F 5 HOH A 74 474 128 HOH HOH . F 5 HOH A 75 475 24 HOH HOH . F 5 HOH A 76 476 174 HOH HOH . F 5 HOH A 77 477 52 HOH HOH . F 5 HOH A 78 478 33 HOH HOH . F 5 HOH A 79 479 14 HOH HOH . F 5 HOH A 80 480 82 HOH HOH . F 5 HOH A 81 481 191 HOH HOH . F 5 HOH A 82 482 21 HOH HOH . F 5 HOH A 83 483 75 HOH HOH . F 5 HOH A 84 484 4 HOH HOH . F 5 HOH A 85 485 45 HOH HOH . F 5 HOH A 86 486 137 HOH HOH . F 5 HOH A 87 487 89 HOH HOH . F 5 HOH A 88 488 154 HOH HOH . F 5 HOH A 89 489 201 HOH HOH . F 5 HOH A 90 490 162 HOH HOH . F 5 HOH A 91 491 49 HOH HOH . F 5 HOH A 92 492 100 HOH HOH . F 5 HOH A 93 493 12 HOH HOH . F 5 HOH A 94 494 72 HOH HOH . F 5 HOH A 95 495 64 HOH HOH . F 5 HOH A 96 496 134 HOH HOH . F 5 HOH A 97 497 46 HOH HOH . F 5 HOH A 98 498 173 HOH HOH . F 5 HOH A 99 499 142 HOH HOH . F 5 HOH A 100 500 169 HOH HOH . F 5 HOH A 101 501 122 HOH HOH . F 5 HOH A 102 502 70 HOH HOH . F 5 HOH A 103 503 126 HOH HOH . F 5 HOH A 104 504 18 HOH HOH . F 5 HOH A 105 505 71 HOH HOH . F 5 HOH A 106 506 60 HOH HOH . F 5 HOH A 107 507 58 HOH HOH . F 5 HOH A 108 508 57 HOH HOH . F 5 HOH A 109 509 28 HOH HOH . F 5 HOH A 110 510 104 HOH HOH . F 5 HOH A 111 511 32 HOH HOH . F 5 HOH A 112 512 106 HOH HOH . F 5 HOH A 113 513 95 HOH HOH . F 5 HOH A 114 514 176 HOH HOH . F 5 HOH A 115 515 107 HOH HOH . F 5 HOH A 116 516 19 HOH HOH . F 5 HOH A 117 517 94 HOH HOH . F 5 HOH A 118 518 39 HOH HOH . F 5 HOH A 119 519 87 HOH HOH . F 5 HOH A 120 520 86 HOH HOH . F 5 HOH A 121 521 124 HOH HOH . F 5 HOH A 122 522 109 HOH HOH . F 5 HOH A 123 523 93 HOH HOH . F 5 HOH A 124 524 80 HOH HOH . F 5 HOH A 125 525 103 HOH HOH . F 5 HOH A 126 526 120 HOH HOH . F 5 HOH A 127 527 105 HOH HOH . F 5 HOH A 128 528 99 HOH HOH . F 5 HOH A 129 529 90 HOH HOH . F 5 HOH A 130 530 129 HOH HOH . F 5 HOH A 131 531 16 HOH HOH . F 5 HOH A 132 532 132 HOH HOH . F 5 HOH A 133 533 156 HOH HOH . F 5 HOH A 134 534 69 HOH HOH . F 5 HOH A 135 535 88 HOH HOH . F 5 HOH A 136 536 118 HOH HOH . F 5 HOH A 137 537 25 HOH HOH . F 5 HOH A 138 538 158 HOH HOH . F 5 HOH A 139 539 84 HOH HOH . F 5 HOH A 140 540 183 HOH HOH . F 5 HOH A 141 541 83 HOH HOH . F 5 HOH A 142 542 34 HOH HOH . F 5 HOH A 143 543 26 HOH HOH . F 5 HOH A 144 544 123 HOH HOH . F 5 HOH A 145 545 63 HOH HOH . F 5 HOH A 146 546 30 HOH HOH . F 5 HOH A 147 547 143 HOH HOH . F 5 HOH A 148 548 56 HOH HOH . F 5 HOH A 149 549 50 HOH HOH . F 5 HOH A 150 550 140 HOH HOH . F 5 HOH A 151 551 136 HOH HOH . F 5 HOH A 152 552 108 HOH HOH . F 5 HOH A 153 553 157 HOH HOH . F 5 HOH A 154 554 138 HOH HOH . F 5 HOH A 155 555 141 HOH HOH . F 5 HOH A 156 556 159 HOH HOH . F 5 HOH A 157 557 41 HOH HOH . F 5 HOH A 158 558 62 HOH HOH . F 5 HOH A 159 559 205 HOH HOH . F 5 HOH A 160 560 66 HOH HOH . F 5 HOH A 161 561 170 HOH HOH . F 5 HOH A 162 562 135 HOH HOH . F 5 HOH A 163 563 115 HOH HOH . F 5 HOH A 164 564 130 HOH HOH . F 5 HOH A 165 565 127 HOH HOH . F 5 HOH A 166 566 85 HOH HOH . F 5 HOH A 167 567 153 HOH HOH . F 5 HOH A 168 568 171 HOH HOH . F 5 HOH A 169 569 147 HOH HOH . F 5 HOH A 170 570 29 HOH HOH . F 5 HOH A 171 571 43 HOH HOH . F 5 HOH A 172 572 51 HOH HOH . F 5 HOH A 173 573 54 HOH HOH . F 5 HOH A 174 574 98 HOH HOH . F 5 HOH A 175 575 125 HOH HOH . F 5 HOH A 176 576 199 HOH HOH . F 5 HOH A 177 577 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 2AP . . . E 4 -2.405 -14.191 -17.815 1 19.23 ? N1 2AP 304 A 1 HETATM 2 C C2 2AP . . . E 4 -1.842 -15.363 -17.48 1 17.22 ? C2 2AP 304 A 1 HETATM 3 C C3 2AP . . . E 4 -1.308 -15.587 -16.192 1 19.81 ? C3 2AP 304 A 1 HETATM 4 C C4 2AP . . . E 4 -1.352 -14.548 -15.277 1 22.03 ? C4 2AP 304 A 1 HETATM 5 C C5 2AP . . . E 4 -1.906 -13.344 -15.633 1 23.5 ? C5 2AP 304 A 1 HETATM 6 C C6 2AP . . . E 4 -2.42 -13.218 -16.89 1 23.63 ? C6 2AP 304 A 1 HETATM 7 N N 2AP . . . E 4 -1.81 -16.319 -18.434 1 18.69 ? N 2AP 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 7 #